Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 170 48.1 1621790 99.2% 1608815 139.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,002,670 G→A L19L (CTG→CTA)  xdhB → putative xanthine dehydrogenase FAD‑binding subunit XdhB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,002,6700GA98.5% 222.0 / ‑4.9 65L19L (CTG→CTA) xdhBputative xanthine dehydrogenase FAD‑binding subunit XdhB
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base A (35/29);  total (35/30)
Fisher's exact test for biased strand distribution p-value = 4.62e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

TGCAATCAATACACTGCCGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTGCTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGCGGGGAATTACGC  >  NC_000913/3002534‑3002800
                                                                                                                                        |                                                                                                                                  
tGCAATCAATACACTGCCGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACctactg                                                                                                                                 >  2:538358/1‑140 (MQ=255)
            acTGCCGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCg                                                                                                                     >  2:261750/1‑140 (MQ=255)
               gCCGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGcct                                                                                                                  >  2:215402/1‑138 (MQ=255)
               gCCGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAg                                                                                                                  >  2:134418/1‑140 (MQ=255)
                ccGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAgg                                                                                                                 >  1:351576/1‑140 (MQ=255)
                ccGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAgg                                                                                                                 >  2:254331/1‑140 (MQ=255)
                ccGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAgg                                                                                                                 >  2:475893/1‑140 (MQ=255)
                ccGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAgg                                                                                                                 >  2:622050/1‑140 (MQ=255)
                 cGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACTCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGc                                                                                                                >  2:635115/1‑140 (MQ=255)
                                ggTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTGCTGGCTGACAACCCGCAGGCCAAACTGCTCGCCgg                                                                                                 <  1:154662/140‑1 (MQ=255)
                                ggTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCgg                                                                                                 <  2:351576/140‑1 (MQ=255)
                                  ttATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTg                                                                                               >  2:108104/1‑140 (MQ=255)
                                  ttATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTg                                                                                               >  1:270233/1‑140 (MQ=255)
                                     tatGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCa                                                                                            <  1:475893/140‑1 (MQ=255)
                                     tatGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCa                                                                                            <  2:576185/140‑1 (MQ=255)
                                        gAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTg                                                                                         <  2:463607/140‑1 (MQ=255)
                                         aaGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGa                                                                                        <  1:108104/140‑1 (MQ=255)
                                          agagTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGAc                                                                                       >  1:30531/1‑140 (MQ=255)
                                            agTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGt                                                                                     >  1:254907/1‑140 (MQ=255)
                                              ttCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTa                                                                                    >  2:163688/1‑139 (MQ=255)
                                              ttCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTa                                                                                    <  1:163688/139‑1 (MQ=255)
                                              ttCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTAc                                                                                   >  2:527871/1‑140 (MQ=255)
                                              ttCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTAc                                                                                   >  1:26754/1‑140 (MQ=255)
                                               tCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACt                                                                                  >  2:342385/1‑140 (MQ=255)
                                                ccATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTAc                                                                                   >  2:21689/1‑138 (MQ=255)
                                                ccATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTAc                                                                                   <  1:21689/138‑1 (MQ=255)
                                                ccATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTg                                                                                 >  2:75984/1‑140 (MQ=255)
                                                ccATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTg                                                                                 >  1:705044/1‑140 (MQ=255)
                                                 cATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGa                                                                                >  2:804241/1‑140 (MQ=255)
                                                   tCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGAtt                                                                              <  2:416157/140‑1 (MQ=255)
                                                         aGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTc                                                                        <  1:245248/140‑1 (MQ=255)
                                                           gattgattTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTcca                                                                      <  2:254907/140‑1 (MQ=255)
                                                           gattgattTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTcca                                                                      <  2:663750/140‑1 (MQ=255)
                                                             ttgattTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAGACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTccacc                                                                    <  1:254331/140‑1 (MQ=255)
                                                               gattTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCAt                                                                  <  1:332834/140‑1 (MQ=255)
                                                               gattTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCAt                                                                  <  1:342385/140‑1 (MQ=255)
                                                                     aGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAAt                                                            <  1:134418/140‑1 (MQ=255)
                                                                      ggATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATg                                                           >  2:49334/1‑140 (MQ=255)
                                                                       gATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGa                                                          <  1:527871/140‑1 (MQ=255)
                                                                          aaCATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCg                                                       >  2:226732/1‑140 (MQ=255)
                                                                          aaCATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCg                                                       >  2:468653/1‑140 (MQ=255)
                                                                             atcatGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTa                                                    <  2:705044/140‑1 (MQ=255)
                                                                              tcatGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTAt                                                   <  1:538358/140‑1 (MQ=255)
                                                                                 tGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGc                                                >  2:213579/1‑140 (MQ=255)
                                                                                 tGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGc                                                >  1:285805/1‑140 (MQ=255)
                                                                                 tGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGc                                                >  2:33627/1‑140 (MQ=255)
                                                                                 tGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGc                                                >  1:650552/1‑140 (MQ=255)
                                                                                  gTTTGATTTTGCTTCTTACCATCGCGCAGCAACTCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGcc                                               <  1:635115/140‑1 (MQ=255)
                                                                                     tGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCata                                            <  1:207441/140‑1 (MQ=255)
                                                                                      gATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCatat                                           <  1:75984/140‑1 (MQ=255)
                                                                                       aTTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGcc                                               >  2:465685/1‑135 (MQ=255)
                                                                                       aTTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGcc                                               <  1:465685/135‑1 (MQ=255)
                                                                                           tGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATAttgttg                                      <  2:285805/140‑1 (MQ=255)
                                                                                            gCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGa                                     <  1:291858/140‑1 (MQ=255)
                                                                                            gCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGa                                     <  1:213579/140‑1 (MQ=255)
                                                                                             cttcttACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACCGATTCAGCTCCACCATCACAATGACCGTTATCGCCata                                            >  1:693922/1‑132 (MQ=255)
                                                                                             cttcttACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACCGATTCAGCTCCACCATCACAATGACCGTTATCGCCata                                            <  2:693922/132‑1 (MQ=255)
                                                                                                   aCCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCAt                              <  2:30531/140‑1 (MQ=255)
                                                                                                       tCGCGCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATc                          >  1:718248/1‑140 (MQ=255)
                                                                                                        cgcgCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGa                                     <  2:35311/128‑1 (MQ=255)
                                                                                                        cgcgCAGCAACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGa                                     >  1:35311/1‑128 (MQ=255)
                                                                                                            cagcaACCCTTGCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCg                     >  1:778878/1‑140 (MQ=255)
                                                                                                                       gCCGATGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGCgggg          >  1:174370/1‑140 (MQ=255)
                                                                                                                            tGCCATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGCGGGGAATTa     >  2:218764/1‑140 (MQ=255)
                                                                                                                              ccATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGCGGGGAATTACg   >  2:116100/1‑140 (MQ=255)
                                                                                                                               cATCAACCTACTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGCGGGGAATTACGc  <  1:468653/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                  
TGCAATCAATACACTGCCGCTGACGCCAAAACGGTTATATGAAGAGTTCCATCTGGCAGGATTGATTTGAGGATAACATCATGTTTGATTTTGCTTCTTACCATCGCGCAGCAACCCTTGCCGATGCCATCAACCTGCTGGCTGACAACCCGCAGGCCAAACTGCTCGCCGGTGGCACTGACGTACTGATTCAGCTCCACCATCACAATGACCGTTATCGCCATATTGTTGATATTCATAATCTGGCGGAGCTGCGGGGAATTACGC  >  NC_000913/3002534‑3002800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A