Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	143	68.4	2327250	99.3%	2310959	138.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,990,462	T→C	intergenic (‑102/‑92)	yqeK ← / → ygeF	protein YqeK/protein YgeF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,990,462	0	T	C	98.7%	283.8 / ‑4.8	78	intergenic (‑102/‑92)	yqeK/ygeF	protein YqeK/protein YgeF
Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (41/36); total (42/36)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATT  >  NC_000913/2990326‑2990597

aCCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCAt                                                                                                                                      >  1:335014/1‑140 (MQ=255)

  cATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTc                                                                                                                                    >  1:494654/1‑140 (MQ=255)

    tttCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTa                                                                                                                                  >  1:663100/1‑140 (MQ=255)

     ttCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATTCTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTAc                                                                                                                                 >  1:640928/1‑140 (MQ=255)

     ttCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTAc                                                                                                                                 >  2:1098613/1‑140 (MQ=255)

     ttCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTAc                                                                                                                                 >  1:254840/1‑140 (MQ=255)

     ttCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTAc                                                                                                                                 >  1:696968/1‑140 (MQ=255)

       cATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGt                                                                                                                               >  2:427396/1‑140 (MQ=255)

       cATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGt                                                                                                                               <  2:848870/140‑1 (MQ=255)

       cATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGt                                                                                                                               <  1:393202/140‑1 (MQ=255)

               tGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATGATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGtctc                                                                                                                       >  2:795696/1‑140 (MQ=255)

               tGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGtctc                                                                                                                       >  1:466523/1‑140 (MQ=255)

                 cGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACg                                                                                                                           >  1:893805/1‑134 (MQ=255)

                 cGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACg                                                                                                                           <  2:893805/134‑1 (MQ=255)

                 cGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCa                                                                                                                     >  2:848333/1‑140 (MQ=255)

                      aTTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATTGCCATTCTACGTAACGTCTCCATAAgg                                                                                                                <  1:110267/140‑1 (MQ=255)

                      aTTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAgg                                                                                                                <  2:24867/140‑1 (MQ=255)

                       ttCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGt                                                                                                               <  2:335014/140‑1 (MQ=255)

                       ttCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGt                                                                                                               <  1:795696/140‑1 (MQ=255)

                            tGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGatat                                                                                                          <  2:696968/140‑1 (MQ=255)

                              tCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATAttt                                                                                                        <  2:363436/140‑1 (MQ=255)

                                          cTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGa                                                                                            >  1:1104657/1‑140 (MQ=255)

                                          cTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGa                                                                                            >  1:731586/1‑140 (MQ=255)

                                            cacaTTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAg                                                                                          >  2:214449/1‑140 (MQ=255)

                                            cacaTTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAg                                                                                          >  1:1074358/1‑140 (MQ=255)

                                            cacaTTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAg                                                                                          >  1:211543/1‑140 (MQ=255)

                                            cacaTTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAg                                                                                          >  2:128346/1‑140 (MQ=255)

                                            cacaTTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAg                                                                                          >  1:521117/1‑140 (MQ=255)

                                             acaTTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGc                                                                                         >  1:1121850/1‑140 (MQ=255)

                                               aTTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATTCTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTg                                                                                       <  2:640928/140‑1 (MQ=255)

                                               aTTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTg                                                                                       <  2:211543/140‑1 (MQ=255)

                                                    tACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAAt                                                                                  >  2:1074970/1‑140 (MQ=255)

                                                      ccGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTc                                                                                <  2:141263/140‑1 (MQ=255)

                                                           aCTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGAtt                                                                           >  2:16071/1‑140 (MQ=255)

                                                           aCTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGAtt                                                                           <  1:322778/140‑1 (MQ=255)

                                                           aCTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGAtt                                                                           >  2:334333/1‑140 (MQ=255)

                                                           aCTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGAtt                                                                           <  2:1121850/140‑1 (MQ=255)

                                                           aCTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGAtt                                                                           >  1:45147/1‑140 (MQ=255)

                                                              cGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTg                                                                        <  1:62561/140‑1 (MQ=255)

                                                               gATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGc                                                                       >  2:524987/1‑140 (MQ=255)

                                                                aTGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGct                                                                      <  2:731586/140‑1 (MQ=255)

                                                                      cTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATc                                                                >  1:373977/1‑140 (MQ=255)

                                                                          tCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAAt                                                            <  2:254840/140‑1 (MQ=255)

                                                                            aataatCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATga                                                          <  2:521117/140‑1 (MQ=255)

                                                                              taatCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATgaga                                                        >  2:340337/1‑140 (MQ=255)

                                                                                 tCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGaa                                                     >  1:247159/1‑140 (MQ=255)

                                                                                   aCCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAAt                                                   >  1:1147328/1‑140 (MQ=255)

                                                                                   aCCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAAt                                                   >  2:635591/1‑140 (MQ=255)

                                                                                   aCCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAAt                                                   >  2:332290/1‑140 (MQ=255)

                                                                                   aCCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAAt                                                   >  2:690653/1‑140 (MQ=255)

                                                                                                 cTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCa                                     <  2:636462/140‑1 (MQ=255)

                                                                                                 cTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCa                                     <  2:663100/140‑1 (MQ=255)

                                                                                                   aaaaTTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACg                                   >  2:946599/1‑140 (MQ=255)

                                                                                                   aaaaTTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACg                                   <  1:427396/140‑1 (MQ=255)

                                                                                                   aaaaTTAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACg                                   <  1:332290/140‑1 (MQ=255)

                                                                                                       ttAATACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAat                               <  2:373977/140‑1 (MQ=255)

                                                                                                         aaTACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACg                                   >  1:375451/1‑134 (MQ=255)

                                                                                                         aaTACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACg                                   <  2:375451/134‑1 (MQ=255)

                                                                                                         aaTACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAatat                             <  2:210625/140‑1 (MQ=255)

                                                                                                         aaTACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAatat                             >  1:362956/1‑140 (MQ=255)

                                                                                                         aaTACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAatat                             <  2:222924/140‑1 (MQ=255)

                                                                                                         aaTACCCCTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAatat                             <  1:946599/140‑1 (MQ=255)

                                                                                                               ccTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATtaataa                       <  1:690653/140‑1 (MQ=255)

                                                                                                               ccTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATtaataa                       <  1:334333/140‑1 (MQ=255)

                                                                                                               ccTAATGTGCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATtaataa                       <  2:1147328/140‑1 (MQ=255)

                                                                                                                    tgtgCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGcc                  >  1:1700/1‑140 (MQ=255)

                                                                                                                      tgCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTa                <  2:42865/140‑1 (MQ=255)

                                                                                                                       gCCGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTAc               <  1:1074970/140‑1 (MQ=255)

                                                                                                                        ccGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATtaataa                       <  1:1077602/131‑1 (MQ=255)

                                                                                                                        ccGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATtaataa                       >  2:1077602/1‑131 (MQ=255)

                                                                                                                        ccGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTAcc              >  2:611773/1‑140 (MQ=255)

                                                                                                                        ccGATAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTAcc              >  1:437019/1‑140 (MQ=255)

                                                                                                                           aTAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATtaataa                       >  2:1045075/1‑128 (MQ=255)

                                                                                                                           aTAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATtaataa                       <  1:1045075/128‑1 (MQ=255)

                                                                                                                            tAACAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTg          <  1:431477/140‑1 (MQ=255)

                                                                                                                             aaCAAATATAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGc         >  1:899143/1‑140 (MQ=255)

                                                                                                                                  atatAGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCa    >  1:227064/1‑140 (MQ=255)

                                                                                                                                    ataGCCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCAtt  <  1:524987/140‑1 (MQ=255)

ACCATTTCATGAATCTGCGAAAATTCAATGTCCATTGTATACCTCACATTTTTACCGTGACTCGATGTTACTGTTCAATAATCACCTTCCATCAATACTAAAATTAATACCCCTAATGTGCCGATAACAAATATAGTCATTCTACGTAACGTCTCCATAAGGTGATATTTGACATTATCAGAAGCTGCGAATTCGGATTTTGCTCTAATCAAATGAGAGAAATGTAAAATGAAGCCACGAAATATTAATAATAGCCTACCACTGCAACCATT  >  NC_000913/2990326‑2990597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A