Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	154	64.7	2190374	99.2%	2172851	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,978,049	A→G	V284A (GTG→GCG)	lysA ←	diaminopimelate decarboxylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,978,049	0	A	G	100.0%	256.7 / NA	77	V284A (GTG→GCG)	lysA	diaminopimelate decarboxylase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (38/39); total (38/39)

GTTCCAGAGAACGACCATCAGCTGCCAGGGCACTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCACCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCCACAGACCATAATAATGTTCGGTATCAAC  >  NC_000913/2977915‑2978185

gtTCCAGAGAACGACCATCAGCTGCCAGGGCACTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGa                                                                                                                                     <  1:1024646/140‑1 (MQ=255)

   ccAGAGAACGACCATCAGCTGCCAGGGCACTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGta                                                                                                                                  <  1:458399/140‑1 (MQ=255)

          aCGACCATCAGCTGCCAGGGCACTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATa                                                                                                                           <  2:936455/140‑1 (MQ=255)

                aTCAGCTGCCAGGGCACTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCt                                                                                                                                       <  1:956769/122‑1 (MQ=255)

                aTCAGCTGCCAGGGCACTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCt                                                                                                                                       >  2:956769/1‑122 (MQ=255)

                aTCAGCTGCCAGGGCACTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAg                                                                                                                     <  1:436429/140‑1 (MQ=255)

                   aGCTGCCAGGGCACTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACt                                                                                                                  >  2:529543/1‑140 (MQ=255)

                      tcccAGGGCACTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTgcg                                                                                                               <  2:1013177/138‑1 (MQ=255)

                      tGCCAGGGCACTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTgcg                                                                                                               <  1:953851/140‑1 (MQ=255)

                          aGGGCACTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTAc                                                                                                           <  1:196519/140‑1 (MQ=255)

                                  gATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGc                                                                                                   >  2:181368/1‑140 (MQ=255)

                                   atatGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCg                                                                                                  >  1:44772/1‑140 (MQ=255)

                                        gtggtAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCg                                                                                             >  1:613632/1‑140 (MQ=255)

                                             aaCTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCa                                                                                        >  2:24250/1‑140 (MQ=255)

                                             aaCTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGGAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCa                                                                                        >  2:1033461/1‑140 (MQ=255)

                                              aCTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCaa                                                                                       >  1:733200/1‑140 (MQ=255)

                                                  ccGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTc                                                                                   >  2:57450/1‑140 (MQ=255)

                                                   cGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCa                                                                                        >  2:594678/1‑134 (MQ=255)

                                                   cGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCa                                                                                        <  1:594678/134‑1 (MQ=255)

                                                   cGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTcc                                                                                  >  1:961141/1‑140 (MQ=255)

                                                   cGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTcc                                                                                  >  1:236357/1‑140 (MQ=255)

                                                     tACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTTACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAg                                                                                >  2:923950/1‑140 (MQ=255)

                                                       cATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGtt                                                                              >  1:1089120/1‑140 (MQ=255)

                                                          tGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCa                                                                                 >  2:311817/1‑134 (MQ=255)

                                                          tGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCa                                                                                 <  1:311817/134‑1 (MQ=255)

                                                          tGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTca                                                                           <  2:607311/140‑1 (MQ=255)

                                                          tGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTca                                                                           <  2:236357/140‑1 (MQ=255)

                                                          tGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTca                                                                           >  2:300714/1‑140 (MQ=255)

                                                            ccGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTcc                                                                                  >  2:303455/1‑131 (MQ=255)

                                                            ccGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTcc                                                                                  <  1:303455/131‑1 (MQ=255)

                                                            ccGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTcaca                                                                         >  2:210974/1‑140 (MQ=255)

                                                            ccGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTcaca                                                                         >  1:55137/1‑140 (MQ=255)

                                                            ccGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTcaca                                                                         >  1:107646/1‑140 (MQ=255)

                                                              gggCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAgg                                                                       <  2:504697/140‑1 (MQ=255)

                                                              gggCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAgg                                                                       <  1:24250/140‑1 (MQ=255)

                                                              gggCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAgg                                                                       <  1:923950/140‑1 (MQ=255)

                                                               ggCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAggg                                                                      >  2:787429/1‑140 (MQ=255)

                                                                 cgcATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGGAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTg                                                                    >  2:529222/1‑140 (MQ=255)

                                                                             ttGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATggcg                                                        >  1:1036029/1‑140 (MQ=255)

                                                                             ttGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATggcg                                                        >  1:863890/1‑140 (MQ=255)

                                                                              tGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATggcgg                                                       >  1:690126/1‑140 (MQ=255)

                                                                                aaCCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATggcgggc                                                     >  2:825572/1‑140 (MQ=255)

                                                                                     ggCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGAttt                                                >  1:49483/1‑140 (MQ=255)

                                                                                     ggCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGAttt                                                >  1:532346/1‑140 (MQ=255)

                                                                                     ggCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGAttt                                                >  1:690808/1‑140 (MQ=255)

                                                                                        aTCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCt                                             <  1:18257/140‑1 (MQ=255)

                                                                                          cAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTcc                                           >  1:836040/1‑139 (MQ=255)

                                                                                          cAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCa                                           >  1:133241/1‑140 (MQ=255)

                                                                                            aCCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCAcg                                         <  1:181368/140‑1 (MQ=255)

                                                                                              cAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCAcgcg                                       <  1:825572/140‑1 (MQ=255)

                                                                                              cAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCAcgcg                                       <  1:787429/140‑1 (MQ=255)

                                                                                              cAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCAcgcg                                       <  2:690126/140‑1 (MQ=255)

                                                                                                gCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCAcgcgcg                                     <  2:418026/140‑1 (MQ=255)

                                                                                                 cacaAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCgg                                    >  1:845707/1‑140 (MQ=255)

                                                                                                  acaAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGc                                   <  2:1036029/140‑1 (MQ=255)

                                                                                                  acaAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGc                                   <  2:863890/140‑1 (MQ=255)

                                                                                                   caAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCa                                  <  1:626214/140‑1 (MQ=255)

                                                                                                   caAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCa                                  <  1:57450/140‑1 (MQ=255)

                                                                                                      aGTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTc                               >  1:201840/1‑140 (MQ=255)

                                                                                                       gTGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGGAATTAATACGCCAGACTGCGCTACCAGGGAGCGACCCGGCTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGTTCACGCGCGGCATTcc                              >  2:979746/1‑140 (MQ=255)

                                                                                                        tGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCca                             <  2:613632/140‑1 (MQ=255)

                                                                                                        tGGCGGCTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCca                             <  2:845707/140‑1 (MQ=255)

                                                                                                          gcggcTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCcaca                           <  2:733200/140‑1 (MQ=255)

                                                                                                          gcggcTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCcaca                           <  1:996668/140‑1 (MQ=255)

                                                                                                          gcggcTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCcaca                           <  2:55137/140‑1 (MQ=255)

                                                                                                          gcggcTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCcaca                           <  2:1089120/140‑1 (MQ=255)

                                                                                                          gcggcTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGCTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCcaca                           <  2:961141/140‑1 (MQ=255)

                                                                                                           cggcTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCCACAg                          >  1:737532/1‑140 (MQ=255)

                                                                                                            ggcTCCCCATTTGTTTGACGCTCCGTGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCCACAGa                         <  2:944073/140‑1 (MQ=255)

                                                                                                            ggcTCCCCATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCCACAGa                         <  1:346311/140‑1 (MQ=255)

                                                                                                                ccccATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCcaca                           >  1:914467/1‑134 (MQ=255)

                                                                                                                ccccATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCcaca                           <  2:914467/134‑1 (MQ=255)

                                                                                                                ccccATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCCACAGAc                        <  2:638052/137‑1 (MQ=255)

                                                                                                                ccccATTTGTTTGACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCCACAGAc                        >  1:638052/1‑137 (MQ=255)

                                                                                                                         tttgACGCTCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCCACAGACCATAATAATGtt            <  1:210974/140‑1 (MQ=255)

                                                                                                                                 tCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCCACAGACCATAATAATGtt            <  2:691867/132‑1 (MQ=255)

                                                                                                                                 tCCGCGCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCCACAGACCATAATAATGtt            >  1:691867/1‑132 (MQ=255)

                                                                                                                                   cgcgCCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCCACAGACCATAATAATGTTCGGTATCAAc  <  2:737532/140‑1 (MQ=255)

GTTCCAGAGAACGACCATCAGCTGCCAGGGCACTGATATGGTGGTAACTACCGTACATTGCCGGGCGCATCAGATCGTTGAACCCGGCATCAACCAGCACAAAGTGGCGGCTCCCCATTTGTTTGACGCTCCGCACCTGAGTAATTAATACGCCAGACTGCGCTACCAGGAAGCGACCCGGTTCAATTTCCAGTTTCACAGGGTGGCCCAAATGGCGGGCGATTTGCTCACGCGCGGCATTCCACAGACCATAATAATGTTCGGTATCAAC  >  NC_000913/2977915‑2978185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A