Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F28 I1 R1
|
154 |
64.7 |
2190374 |
99.2% |
2172851 |
138.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,999,680 |
(G)7→8 |
coding (212/756 nt) |
ygeR ← |
LysM domain‑containing putative peptidase lipoprotein YgeR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,999,673 | 1 | . | G | 94.1%
| 171.7
/ 3.5
| 51 | coding (219/756 nt) | ygeR | LysM domain‑containing putative peptidase lipoprotein YgeR |
| Reads supporting (aligned to +/- strand): ref base . (1/2); new base G (20/28); total (21/30) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.16e-01 |
GGCCAGGATGATTTCGGTACCGCTGATGACGGTGTAACCGATGCGGTTTTGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑A‑‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTG > NC_000913/2999536‑2999791
|
ggcCAGGATGATTTCGGTACCGCTGATGACGGTGTAACCGATGCGGTTTTGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑A‑‑gg > 2:995066/1‑140 (MQ=255)
cAGGATGATTTCGGTACCGCTGATGACGGTGTAACCGATGCGGTTTTGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCACCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑A‑‑ggggg > 1:317471/1‑140 (MQ=255)
ggATGATTTCGGTACCGCTGATGACGGTGTAACCGATGCGGTTTTGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑A‑‑ggggg‑gg > 1:377804/1‑140 (MQ=255)
ggATGATTTCGGTACCGCTGATGACGGTGTAACCGATGCGGTTTTGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑A‑‑ggggg‑gg > 2:373478/1‑140 (MQ=255)
gTACCGCTGATGACGGTGTAACCGATGCGGTTTTGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGtt > 2:625764/1‑140 (MQ=255)
cTGATGACGGTGTAACCGATGCGGTTTTGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTcg > 1:878354/1‑140 (MQ=255)
cTGATGACGGTGTAACCGATGCGGTTTTGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTcg < 2:446436/140‑1 (MQ=255)
tgatgaCGGTGTAACCGATGCGGTTTTGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTcgc < 1:625764/140‑1 (MQ=255)
atgaCGGTGTAACCGATGCGGTTTTGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCgcgc < 1:715282/140‑1 (MQ=255)
ggTGTAACCGATGCGGTTTTGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGtt > 2:10263/1‑140 (MQ=255)
aaCCGATGCGGTTTTGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCtttt > 1:810476/1‑140 (MQ=255)
aaCCGATGCGGTTTTGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCtttt < 2:135858/140‑1 (MQ=255)
aTGCGGTTTTGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCt < 1:428210/140‑1 (MQ=255)
aTGCGGTTTTGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCt < 2:878354/140‑1 (MQ=255)
gCGGTTTTGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTgg > 2:16080/1‑140 (MQ=255)
gTTTTGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTc < 2:617435/140‑1 (MQ=255)
ttGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCg < 1:474571/140‑1 (MQ=255)
tGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AGGGGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTGCGCTGGTTCCCg < 1:294300/140‑1 (MQ=255)
gTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AGGGGGGG‑GGAAAGCCCGTTCA‑TCGCGCCCGGTCTTTTTAGCTTGGTTCCgtgg > 1:928074/1‑140 (MQ=255)
ttGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCACCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTgcg < 2:317471/140‑1 (MQ=255)
gttttGGGGGTTGATTTACGTGTAATACTGTTCCTTTTCGCCCCCCCAATTTTTAGTTTCTGCCAAACTCAAATGGTGTAGG‑‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGcgcg < 2:928074/138‑1 (MQ=255)
gATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGcgcg < 1:995066/140‑1 (MQ=255)
tttGGCGGTTGATTTACGTGTAATACTGCTAC‑TTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGaaa < 2:15197/140‑1 (MQ=255)
tGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAAt < 1:671597/140‑1 (MQ=255)
ggCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATa < 1:10263/140‑1 (MQ=255)
ggCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATa > 2:718443/1‑140 (MQ=255)
aCGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTa < 1:718443/140‑1 (MQ=255)
aaTACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATccccc > 2:1029515/1‑140 (MQ=255)
tGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTACCCCCCCGttt > 1:494061/1‑140 (MQ=255)
gCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTc > 2:10000/1‑140 (MQ=255)
gCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTc > 2:842734/1‑140 (MQ=255)
gCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTc < 2:448875/140‑1 (MQ=255)
cTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATcc > 1:381214/1‑130 (MQ=255)
cTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATcc < 2:381214/130‑1 (MQ=255)
cTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCa < 1:936285/140‑1 (MQ=255)
cTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCa > 1:76655/1‑140 (MQ=255)
cTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCa > 2:602808/1‑140 (MQ=255)
cTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCa > 2:413493/1‑140 (MQ=255)
cTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑A‑‑GGGGGTGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCa > 1:179684/1‑140 (MQ=255)
tACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCAc < 1:602808/140‑1 (MQ=255)
aCTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACg > 1:73379/1‑140 (MQ=255)
tttCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGgtg < 1:373478/140‑1 (MQ=255)
cGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCAc < 2:840125/133‑1 (MQ=255)
cGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCAc > 1:840125/1‑133 (MQ=255)
ccccACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAAc > 1:230557/1‑140 (MQ=255)
acccaGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAg < 1:71104/140‑1 (MQ=255)
caGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTACCCCCCCGTTTCACGGTGTAAACGGAGCCg < 2:494061/140‑1 (MQ=255)
aGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCgg > 2:333678/1‑140 (MQ=255)
ttttAGTTTCTGACCAACTTCAATGGTGTA‑A‑‑GGGGGTGGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCGGaa < 2:179684/140‑1 (MQ=255)
ttAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCGGAATa < 2:377804/140‑1 (MQ=255)
ttAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCGGAATa < 1:513847/140‑1 (MQ=255)
ttAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCGGAATa < 1:333678/140‑1 (MQ=255)
ttAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCGGAATa < 2:85563/140‑1 (MQ=255)
ttAGTTTCTGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCGGAATa < 1:312894/140‑1 (MQ=255)
tGACCAACTTCAATGGTGTA‑AG‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTg > 2:154571/1‑140 (MQ=255)
|
GGCCAGGATGATTTCGGTACCGCTGATGACGGTGTAACCGATGCGGTTTTGGTCGTTGATTTGGCGGTTGATTTACGTGTAATACTGCTACTTTTCGCCCCACCCAGTTTTAGTTTCTGACCAACTTCAATGGTGTA‑A‑‑GGGGG‑GGAAATGCCGTTCAGTCGCGCCAGTTCTTTTACGCTGGTTCCCGTGGTGCGCGAAATACGATATAGCGTATCCCCCCGTTTCACGGTGTAAACGGAGCCGGAATACGTTCCTG > NC_000913/2999536‑2999791
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
