Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F48 I1 R1	62	147.6	5031800	99.1%	4986513	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,228,109	G→T	A127S (GCC→TCC)	yjbB →	putative inorganic phosphate export protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,228,109	0	G	T	100.0%	313.4 / NA	93	A127S (GCC→TCC)	yjbB	putative inorganic phosphate export protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (35/58); total (35/58)

Only 100 of 110 total aligned reads displayed.

GGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACCGGCGATATTCT  >  NC_000913/4227973‑4228245

ggCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCg                                                                                                                                       <  2:416620/140‑1 (MQ=255)

 gCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCgg                                                                                                                                      >  1:1157704/1‑140 (MQ=255)

     tGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCaa                                                                                                                                  <  2:1226283/140‑1 (MQ=255)

       gTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACt                                                                                                                                >  1:2423091/1‑140 (MQ=255)

          aTTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTggg                                                                                                                             <  1:1943479/140‑1 (MQ=255)

           ttGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAGCAGTCACGCTACGGGCAACTGGGc                                                                                                                            <  2:709531/140‑1 (MQ=255)

           ttGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGc                                                                                                                            <  1:471531/140‑1 (MQ=255)

           ttGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGc                                                                                                                            <  1:665506/140‑1 (MQ=255)

           ttGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGc                                                                                                                            <  1:606370/140‑1 (MQ=255)

           ttGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGc                                                                                                                            <  2:293753/140‑1 (MQ=255)

           ttGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTAATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGc                                                                                                                            <  2:104630/140‑1 (MQ=255)

            tgtgCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTTCTCGGACGCAAACAGTCACGCTCCCGGCAACCTGGcc                                                                                                                           >  2:665506/1‑140 (MQ=255)

            tgtgCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGcc                                                                                                                           >  1:51/1‑140 (MQ=255)

            tgtgCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCCGGCGCAAACAGTCACGCTCCGGGCAACTCGGcc                                                                                                                           >  2:1027360/1‑140 (MQ=255)

             gtgCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTTCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGccc                                                                                                                          >  1:2429714/1‑139 (MQ=255)

             gtgCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTAGGACGCAAACAGTCACGCTCCGGGCAACTGGGCcg                                                                                                                          <  1:2131114/140‑1 (MQ=255)

              tgCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTTCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCcgc                                                                                                                         >  1:101699/1‑140 (MQ=255)

                cTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGt                                                                                                                       <  1:2159381/140‑1 (MQ=255)

                cTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGt                                                                                                                       <  1:1451230/140‑1 (MQ=255)

                cTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGt                                                                                                                       <  1:1027360/140‑1 (MQ=255)

                cTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGt                                                                                                                       <  1:1999145/140‑1 (MQ=255)

                   ggTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTTCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCgg                                                                                                                    >  1:1635185/1‑140 (MQ=255)

                   ggTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCCAACAGTCACGCTCCGGGCAACTTGGCCGCGTCgt                                                                                                                    >  2:1170338/1‑139 (MQ=255)

                     tGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTTCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGc                                                                                                                            >  1:931442/1‑130 (MQ=255)

                     tGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTTCTCCGGCGCCAACAATCCCGCTCCGGGCAACTGGGCCGCGTTGGtt                                                                                                                  >  2:1190859/1‑139 (MQ=255)

                     tGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGc                                                                                                                            <  2:931442/130‑1 (MQ=255)

                     tGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTa                                                                                                                  >  1:1596812/1‑140 (MQ=255)

                     tGCAGATGTCGGGAC‑GCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTAt                                                                                                                 <  1:2219662/140‑1 (MQ=255)

                      gCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTAt                                                                                                                 <  2:1208169/140‑1 (MQ=255)

                      gCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTAt                                                                                                                 <  2:1262817/140‑1 (MQ=255)

                      gCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTAt                                                                                                                 >  1:1851287/1‑140 (MQ=255)

                        aGATGTCGGGAC‑GCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGGTTTTTTTCCCCGGGCGCAAACAGTCACGCTTCGGGGAACTGGGCCTCTTTGGTATTgt                                                                                                              >  2:2219662/1‑139 (MQ=255)

                          aTGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCCCCGGGCAACTGGGCCGCGTCGGTATTGGt                                                                                                             >  1:542945/1‑140 (MQ=255)

                             tCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCtt                                                                                                          >  2:432575/1‑140 (MQ=255)

                             tCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGGATTGGTCtt                                                                                                          >  1:2324764/1‑140 (MQ=255)

                              cGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGGTTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGGCGGTATTGGTCTTg                                                                                                         >  1:1274801/1‑140 (MQ=255)

                               gggACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCCGGCAACTGGGCCGCGTCGGTATTTGTCTTgt                                                                                                        >  2:2050453/1‑139 (MQ=255)

                                ggACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTggg                                                                                                       <  2:2501722/140‑1 (MQ=255)

                                ggACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTggg                                                                                                       <  1:592936/140‑1 (MQ=255)

                                ggACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTggg                                                                                                       <  1:873544/140‑1 (MQ=255)

                                ggACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTggg                                                                                                       <  1:2239056/140‑1 (MQ=255)

                                    ggCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTTCTCGGACGCAAAAAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTTTTTGGCTgt                                                                                                   >  2:707051/1‑139 (MQ=255)

                                      cgcTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTTCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCTGGATTGGTCTTTGGCTGGtt                                                                                                 >  2:873544/1‑140 (MQ=255)

                                      cgcTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGAtt                                                                                                 >  1:1343450/1‑140 (MQ=255)

                                       gcTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTTCTCGGACGCAAACAGTCACGCTCCCGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGAttt                                                                                                >  2:1238660/1‑140 (MQ=255)

                                           aTGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCt                                                                                            <  2:1410801/140‑1 (MQ=255)

                                               cgcgTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAgcg                                                                                        <  1:886351/140‑1 (MQ=255)

                                               cgcgTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAgcg                                                                                        <  2:1396724/140‑1 (MQ=255)

                                                  gTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGGCTTGGGCTGATTTTGCTAGCGCtt                                                                                     >  2:1063798/1‑139 (MQ=255)

                                                   tATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTgg                                                                                    <  1:1170338/140‑1 (MQ=255)

                                                    aTTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGa                                                                                   <  2:1392591/140‑1 (MQ=255)

                                                    aTTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGa                                                                                   <  1:1148039/140‑1 (MQ=255)

                                                    aTTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGa                                                                                   <  1:1108966/140‑1 (MQ=255)

                                                         cACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGa                                                                              <  1:164655/140‑1 (MQ=255)

                                                         cACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGa                                                                              <  1:1140812/140‑1 (MQ=255)

                                                         cACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGa                                                                              <  1:416852/140‑1 (MQ=255)

                                                             ttCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCCGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATtgt                                                                          >  1:1921617/1‑140 (MQ=255)

                                                              tCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATtgtg                                                                         >  1:1067115/1‑140 (MQ=255)

                                                              tCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATtgtg                                                                         <  2:2097963/140‑1 (MQ=255)

                                                               cGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGc                                                                        >  1:970831/1‑140 (MQ=255)

                                                               cGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGAATGTGc                                                                        >  1:2295106/1‑140 (MQ=255)

                                                                gACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCa                                                                       <  2:2026472/140‑1 (MQ=255)

                                                                gACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCa                                                                       <  1:1226730/140‑1 (MQ=255)

                                                                        cTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTaa                                                               <  2:1818029/140‑1 (MQ=255)

                                                                          ggCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACg                                                             <  2:1971970/140‑1 (MQ=255)

                                                                           gCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGc                                                            >  2:1305191/1‑140 (MQ=255)

                                                                            cTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGcc                                                           >  1:573285/1‑140 (MQ=255)

                                                                            cTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGcc                                                           >  2:1025972/1‑140 (MQ=255)

                                                                                cACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATc                                                       >  1:2346208/1‑140 (MQ=255)

                                                                                 aCCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAAAAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCa                                                      >  1:2505133/1‑140 (MQ=255)

                                                                                   cGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCAcc                                                    <  1:707051/140‑1 (MQ=255)

                                                                                   cGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCAcc                                                    <  1:212811/140‑1 (MQ=255)

                                                                                     ttACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCa                                                  >  2:501346/1‑140 (MQ=255)

                                                                                     ttACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCa                                                  >  1:625393/1‑140 (MQ=255)

                                                                                             ttttATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACg                                          <  2:625393/140‑1 (MQ=255)

                                                                                             ttttATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACg                                          >  1:1631011/1‑140 (MQ=255)

                                                                                             ttttATCGGCGTGATTTTTTTCCCCGGACGCAAACAGTCACGCTCCGGGCAACTGTGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACg                                          >  1:1645861/1‑140 (MQ=255)

                                                                                               ttATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGc                                        <  2:1750804/140‑1 (MQ=255)

                                                                                                 aTCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGt                                      <  2:573285/140‑1 (MQ=255)

                                                                                                 aTCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGt                                      >  2:49407/1‑140 (MQ=255)

                                                                                                 aTCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGGTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGt                                      >  2:874410/1‑140 (MQ=255)

                                                                                                      cGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAgg                                 >  1:199764/1‑140 (MQ=255)

                                                                                                      cGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAgg                                 >  2:856719/1‑140 (MQ=255)

                                                                                                      cGTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAgg                                 <  1:1025972/140‑1 (MQ=255)

                                                                                                       gTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAGGt                                >  2:1991930/1‑140 (MQ=255)

                                                                                                       gTGATTTTTTTCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAGGt                                <  2:2423091/140‑1 (MQ=255)

                                                                                                               tttCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAGGTGATCTTTg                        <  2:1596812/140‑1 (MQ=255)

                                                                                                               tttCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAGGTGATCTTTg                        <  2:2346208/140‑1 (MQ=255)

                                                                                                                ttCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAGGTGATCTTTGc                       >  2:90784/1‑140 (MQ=255)

                                                                                                                ttCCTCGGACGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAGGTGATCTTTGc                       >  1:481861/1‑140 (MQ=255)

                                                                                                                    tCGGACGCAAACAGTCACGCTCCGGGCAACTGAGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCg                   >  1:1793839/1‑140 (MQ=255)

                                                                                                                         cGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGAc              <  2:199764/140‑1 (MQ=255)

                                                                                                                         cGCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGAc              <  1:260099/140‑1 (MQ=255)

                                                                                                                         agCAAACAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGAc              <  2:1515074/139‑1 (MQ=255)

                                                                                                                            aaaCAGTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACCgg           <  1:1991930/140‑1 (MQ=255)

                                                                                                                                 gTCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACCGGCGata      <  2:1343450/140‑1 (MQ=255)

                                                                                                                                  tCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACCGGCGatat     >  1:1279556/1‑140 (MQ=255)

                                                                                                                                  tCACGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACCGGCGatat     >  1:1410152/1‑140 (MQ=255)

                                                                                                                                    aCGCTCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACCGGCGATATTc   >  2:1624581/1‑140 (MQ=255)

                                                                                                                                     cgctCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACCGGCGATATTct  <  2:1067115/140‑1 (MQ=255)

GGCTCTGGTCATTGTGCTGGGTGCAGATGTCGGGACGGCGCTAATGGCGCGTATTCTCACCTTCGACTTATCCTGGCTGTCACCGTTACTTATTTTTATCGGCGTGATTTTTTTCCTCGGACGCAAACAGTCACGCGCCGGGCAACTGGGCCGCGTCGGTATTGGTCTTGGGCTGATTTTGCTAGCGCTGGAGTTGATTGTGCAGGCCGTAACGCCGATCACCCAGGCAAACGGCGTTCAGGTGATCTTTGCCTCGCTGACCGGCGATATTCT  >  NC_000913/4227973‑4228245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A