Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9101112 F55 I0 R1 156 414.6 11700970 99.6% 11654166 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 1,671,433 G→C 12.9% D228H (GAT→CAT)  U712_08610 → Flagellar biosynthesis protein flhA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068811,671,4330GC12.9% 1058.6 / 127.8 367D228H (GAT→CAT) U712_08610Flagellar biosynthesis protein flhA
Reads supporting (aligned to +/- strand):  ref base G (183/135);  new base C (28/19);  total (212/155)
Fisher's exact test for biased strand distribution p-value = 8.75e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.49e-02

Only 100 of 380 total aligned reads displayed.

ACGGTGCCAGTAAATTTGTAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATACGTCGCAGCAGCTACG  >  CP006881/1671284‑1671582
                                                                                                                                                     |                                                                                                                                                     
 cGGTGCCAGTAAATTTGTAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGa                                                                                                                                                      >  2:1404737/1‑150 (MQ=255)
   gTGCCAGTAAATTTGTAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATg                                                                                                                                                    >  1:1977612/1‑150 (MQ=255)
    tGCCAGTAAATTTGTAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATgg                                                                                                                                                   >  2:5500455/1‑150 (MQ=255)
     gCCAGTAAATTTGTAAAAGGTGACGCCATTGCCGTAATCATCATTGTGATGATCAATATTATTTTCTGAATCGTGATCGGAATGCTTCAGCACGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGATGACTGTAGGGGATGGa                                                                                                                                                  >  1:5796863/1‑150 (MQ=255)
       cAGTAAATTTGTAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAAt                                                                                                                                                >  1:5243895/1‑150 (MQ=255)
        aGTAAATTTGTAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAAtt                                                                                                                                               >  2:3697616/1‑150 (MQ=255)
         gTAAATTTGTAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTg                                                                                                                                              <  1:917715/150‑1 (MQ=255)
           aaaTTTGTAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGtt                                                                                                                                            <  2:4118948/150‑1 (MQ=255)
            aaTTTGTAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGttt                                                                                                                                           >  2:3143343/1‑150 (MQ=255)
            aaTTTGTAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGttt                                                                                                                                           >  1:944353/1‑150 (MQ=255)
             aTTTGTAAAAGCTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTc                                                                                                                                          >  1:1946707/1‑150 (MQ=255)
                  tAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTTCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCaaa                                                                                                                                     >  1:1883890/1‑150 (MQ=255)
                    aaaGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATc                                                                                                                                   >  1:477496/1‑150 (MQ=255)
                     aaGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATcc                                                                                                                                  >  1:5373861/1‑150 (MQ=255)
                      aGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATccc                                                                                                                                 <  2:3662234/150‑1 (MQ=255)
                       ggTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCg                                                                                                                                >  2:2495770/1‑150 (MQ=255)
                       ggTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCg                                                                                                                                >  1:2762636/1‑150 (MQ=255)
                         tGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGc                                                                                                                              >  2:2767408/1‑150 (MQ=255)
                           aCGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCAc                                                                                                                            <  1:3560012/150‑1 (MQ=255)
                           aCGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCAc                                                                                                                            >  1:2787503/1‑150 (MQ=255)
                               cATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGtt                                                                                                                        >  2:2359909/1‑150 (MQ=255)
                               cATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGtt                                                                                                                        >  2:433299/1‑150 (MQ=255)
                                aTTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTa                                                                                                                       >  2:5618623/1‑150 (MQ=255)
                                    ccGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAAttt                                                                                                                   >  1:4532467/1‑150 (MQ=255)
                                    ccGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGCAATTGTTTCGCAAATCCCGGCACTGTTAAttt                                                                                                                   >  1:1100689/1‑150 (MQ=255)
                                     cGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTc                                                                                                                  >  2:5424545/1‑150 (MQ=255)
                                      ggAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTct                                                                                                                 >  2:865884/1‑150 (MQ=255)
                                        aaTCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctac                                                                                                               <  1:5730920/150‑1 (MQ=255)
                                          tcatcaTTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacgg                                                                                                             >  2:2883007/1‑150 (MQ=255)
                                           catcatTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggc                                                                                                            >  2:3360627/1‑150 (MQ=255)
                                            atcatTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGTCTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggct                                                                                                           >  1:104124/1‑150 (MQ=255)
                                            atcatTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggct                                                                                                           >  1:2353352/1‑150 (MQ=255)
                                                ttGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggctacgg                                                                                                       <  1:85222/150‑1 (MQ=255)
                                                 tgtgATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACggg                                                                                                      >  1:2462845/1‑150 (MQ=255)
                                                   tgatgaTCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTa                                                                                                    >  2:2012471/1‑150 (MQ=255)
                                                     atgatCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTAtt                                                                                                  >  2:5152130/1‑150 (MQ=255)
                                                         tCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTgg                                                                                              >  2:3281349/1‑150 (MQ=255)
                                                          cAATATTATTTTCGGAATGGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGt                                                                                             <  1:421077/150‑1 (MQ=255)
                                                           aaTATTATTTTCGGATTCGTGATCGGAATGCTTCAGCAGGGCATCTCCATTCAAGAAGCTCCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTACGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTc                                                                                            <  2:4598188/150‑1 (MQ=255)
                                                           aaTATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGTCTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTc                                                                                            >  2:1931514/1‑150 (MQ=255)
                                                           aaTATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTANGGCTACGGGTATTGTGGTc                                                                                            >  2:5813063/1‑150 (MQ=255)
                                                                tattTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAag                                                                                       <  2:2717493/150‑1 (MQ=255)
                                                                 attTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAaga                                                                                      >  1:2510734/1‑150 (MQ=255)
                                                                     tCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTg                                                                                  >  1:1829618/1‑150 (MQ=255)
                                                                       ggAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCa                                                                                >  1:2175608/1‑150 (MQ=255)
                                                                        gAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCAt                                                                               >  1:3848837/1‑150 (MQ=255)
                                                                          aTCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCt                                                                             >  2:5242989/1‑150 (MQ=255)
                                                                          aTCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCt                                                                             <  1:4181930/150‑1 (MQ=255)
                                                                            cGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGa                                                                           <  1:3122825/150‑1 (MQ=255)
                                                                              tGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAg                                                                         >  2:3533340/1‑150 (MQ=255)
                                                                               gATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAgg                                                                        >  1:1277066/1‑150 (MQ=255)
                                                                                 tCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGaa                                                                      >  1:1430074/1‑150 (MQ=255)
                                                                                   ggAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAAc                                                                    <  2:5773665/150‑1 (MQ=255)
                                                                                   ggAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAAGAAAc                                                                    >  1:2115350/1‑150 (MQ=255)
                                                                                        gCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAgg                                                               >  1:363580/1‑150 (MQ=255)
                                                                                          ttCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGc                                                             <  2:2230770/150‑1 (MQ=255)
                                                                                            cagcagGGCATGTTCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGCGGAAGGAATTGTTTCGCAAATCACGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCACCTGAAGGAAACTTAGAGCAt                                                           <  1:2918499/150‑1 (MQ=255)
                                                                                                agGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACa                                                       >  1:3341168/1‑150 (MQ=255)
                                                                                                 gggCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACAt                                                      >  2:1529801/1‑150 (MQ=255)
                                                                                                 gggCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACAt                                                      >  2:4278431/1‑150 (MQ=255)
                                                                                                  gtcATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACAtt                                                     <  1:1370978/148‑1 (MQ=255)
                                                                                                  ggCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACAtt                                                     <  2:4143613/150‑1 (MQ=255)
                                                                                                   gCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTa                                                    >  2:2948999/1‑150 (MQ=255)
                                                                                                   gCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGAGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTa                                                    >  1:2484498/1‑150 (MQ=255)
                                                                                                      tGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAg                                                 >  1:1307616/1‑150 (MQ=255)
                                                                                                       gTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAgg                                                >  1:4124638/1‑150 (MQ=255)
                                                                                                        tCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGc                                               <  2:3916241/150‑1 (MQ=255)
                                                                                                         atttacAAGATGATGCTACACACTTTACTATGCTTACAGTAGGGTATGGAATTGTTTCGTAATTCTTGTCATTGTTCATTTCTACGTCTACGGGTATTCTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGCCATGACATTACAGGcc                                              <  2:4432669/145‑1 (MQ=255)
                                                                                                          cATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCa                                             >  1:5206546/1‑150 (MQ=255)
                                                                                                             tCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCt                                          <  1:4278431/150‑1 (MQ=255)
                                                                                                                agaagCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGtt                                       <  2:4946930/150‑1 (MQ=255)
                                                                                                                 gaagCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGttt                                      <  2:5717989/150‑1 (MQ=255)
                                                                                                                 gaagCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGttt                                      >  2:3858423/1‑150 (MQ=255)
                                                                                                                  aagCTGCTTCACACTTTACGAGGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTg                                     <  1:4425138/150‑1 (MQ=255)
                                                                                                                   agCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGc                                    <  2:793941/150‑1 (MQ=255)
                                                                                                                     ctgctTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTAGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGt                                  >  2:4873059/1‑150 (MQ=255)
                                                                                                                       gctTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTAt                                >  1:3025788/1‑150 (MQ=255)
                                                                                                                          tCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCa                             >  2:1176654/1‑150 (MQ=255)
                                                                                                                             cacTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGACTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAg                          >  1:3721126/1‑150 (MQ=255)
                                                                                                                              acTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGc                         <  1:1519940/150‑1 (MQ=255)
                                                                                                                              acTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGc                         <  2:2456432/150‑1 (MQ=255)
                                                                                                                                tttACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCTCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCANAGCtt                       <  1:5838138/150‑1 (MQ=255)
                                                                                                                                tttACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCtt                       <  1:3162296/150‑1 (MQ=255)
                                                                                                                                tttACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCtt                       <  1:5062200/150‑1 (MQ=255)
                                                                                                                                 atACGATGCTGACTGTAGGGGATGGAATAGTATCGCAAATCCCGGCACTGTTAATTACTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGACATGACATTACAGTCCAGCTGTTTGCGTATCCAAAGCttt                      >  2:2575237/2‑150 (MQ=255)
                                                                                                                                  tACGATGGTGACTGTAGGGGATGGAATTGTTTCGCAAATGCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCtttt                     <  1:4736881/150‑1 (MQ=255)
                                                                                                                                  tACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCtttt                     <  2:2987068/150‑1 (MQ=255)
                                                                                                                                   aCGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTta                    <  2:4553312/150‑1 (MQ=255)
                                                                                                                                    cGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTtat                   >  2:3966102/1‑150 (MQ=255)
                                                                                                                                     gATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTtata                  <  2:1101271/150‑1 (MQ=255)
                                                                                                                                     gATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTtata                  >  1:713295/1‑150 (MQ=255)
                                                                                                                                     gATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTtata                  >  1:1706540/1‑150 (MQ=255)
                                                                                                                                      aTGGTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATAc                 <  2:1476932/150‑1 (MQ=255)
                                                                                                                                       tGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATACg                <  2:3105882/150‑1 (MQ=255)
                                                                                                                                           gACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATACGTCgc            <  1:5534747/150‑1 (MQ=255)
                                                                                                                                            aCTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATACGTCgca           >  2:5307457/1‑150 (MQ=255)
                                                                                                                                            aCTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATACGTCgca           <  1:5153503/150‑1 (MQ=255)
                                                                                                                                                  ggggATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATACGTCGCAGCAGCt     <  1:5645651/150‑1 (MQ=255)
                                                                                                                                                  ggggATGGAATTGTTTCACAAATCTCGCCACTGTTAATTTCTACGCCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATACGTCGCAGCAGCt     <  2:177344/150‑1 (MQ=255)
                                                                                                                                                   gggATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATACGTCGCAGCAGCTa    >  1:4918719/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
ACGGTGCCAGTAAATTTGTAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATACGTCGCAGCAGCTACG  >  CP006881/1671284‑1671582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A