Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F59 I0 R4 226 76.6 2995274 95.4% 2857491 127.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 1,671,433 G→C 45.3% D228H (GAT→CAT)  U712_08610 → Flagellar biosynthesis protein flhA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068811,671,4330GC45.3% 13.5 / 118.4 73D228H (GAT→CAT) U712_08610Flagellar biosynthesis protein flhA
Reads supporting (aligned to +/- strand):  ref base G (23/17);  new base C (19/14);  total (42/31)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.03e-01

TAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATACGTCG  >  CP006881/1671302‑1671571
                                                                                                                                   |                                                                                                                                          
tAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAAt                                                                                                                                     >  5:125112/1‑139 (MQ=255)
                  ccGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCgg                                                                                                                    <  7:65515/138‑1 (MQ=255)
                  ccGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCgg                                                                                                                    <  2:44372/138‑1 (MQ=255)
                   cGGAATCATCATTTTGATGATCAATATTATTATCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAATTCCCGGCa                                                                                                                  <  6:46711/139‑1 (MQ=255)
                   cGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCa                                                                                                                  <  1:329893/139‑1 (MQ=255)
                       atcatcATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGt                                                                                                              >  4:171913/1‑139 (MQ=255)
                            catTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCa                                                                                                                            <  4:238125/120‑1 (MQ=255)
                            catTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCa                                                                                                                            >  3:238125/1‑120 (MQ=255)
                            catTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAAtt                                                                                                         >  5:346465/1‑139 (MQ=255)
                                 tgatgaTCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctac                                                                                                    >  7:57862/1‑139 (MQ=255)
                                   atgatCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacgg                                                                                                  >  4:2145/1‑139 (MQ=255)
                                      atCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggcta                                                                                               >  6:220040/1‑139 (MQ=255)
                                      atCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGCGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGCGTGTAGGGGATGGATTTGTTTCGCAAATCCCGGCACTGTTAATTTctacggcta                                                                                               >  6:46714/1‑139 (MQ=255)
                                       tCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggctac                                                                                              <  2:325913/139‑1 (MQ=255)
                                           tattatTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACggg                                                                                           >  7:315124/1‑138 (MQ=255)
                                           tattatTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggc                                                                                                 <  7:22913/132‑1 (MQ=255)
                                           tattatTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggc                                                                                                 >  8:22913/1‑132 (MQ=255)
                                               attTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTAtt                                                                                       <  8:57862/138‑1 (MQ=255)
                                                  ttCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTgg                                                                                   >  7:67398/1‑139 (MQ=255)
                                                  ttCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTgg                                                                                   >  7:257023/1‑139 (MQ=255)
                                                  ttCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTgg                                                                                   >  7:230265/1‑139 (MQ=255)
                                                     ggAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGATTTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTca                                                                                >  2:2778/1‑139 (MQ=255)
                                                     ggAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTca                                                                                >  5:301246/1‑139 (MQ=255)
                                                     ggAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTca                                                                                >  5:302685/1‑139 (MQ=255)
                                                     ggAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCgg                                                                                                                    <  3:307409/103‑1 (MQ=255)
                                                     ggAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTca                                                                                >  1:66361/1‑139 (MQ=255)
                                                     ggAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGATGACTGTAGGGCATGGAATTGTTTCGCAAATCCCgg                                                                                                                    >  4:307409/1‑103 (MQ=255)
                                                       aaTCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGTTGCTGACTGTAGTGCATTGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTcaca                                                                              <  1:189144/139‑1 (MQ=255)
                                                       aaTCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTcaca                                                                              <  8:96610/139‑1 (MQ=255)
                                                            tGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGc                                                                         <  3:171913/139‑1 (MQ=255)
                                                                 ggAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCAt                                                                    <  3:2145/139‑1 (MQ=255)
                                                                          cagcagGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGa                                                            >  7:24783/1‑138 (MQ=255)
                                                                             cagGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACt                                                        >  1:62939/1‑139 (MQ=255)
                                                                             cagGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACt                                                        <  5:220040/139‑1 (MQ=255)
                                                                                  cATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACTAGAGCTGCATCTGAAGGAAACTTAggg                                                   <  6:318924/139‑1 (MQ=255)
                                                                                  cATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAggg                                                   <  5:311800/139‑1 (MQ=255)
                                                                                  cATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAggg                                                   <  6:125112/139‑1 (MQ=255)
                                                                                  cATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggcta                                                                                               >  4:250299/1‑95 (MQ=255)
                                                                                  cATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggcta                                                                                               <  3:250299/95‑1 (MQ=255)
                                                                                  cATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAggg                                                   >  2:343981/1‑139 (MQ=255)
                                                                                    tGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCa                                                 <  8:24783/139‑1 (MQ=255)
                                                                                     gcccATTCACGAAGCTGCTTCACACTTTCGGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCAt                                                <  2:66361/137‑1 (MQ=255)
                                                                                          ttCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCa                                                                                                                  >  8:82767/1‑68 (MQ=255)
                                                                                          ttCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCa                                                                                                                  <  7:82767/68‑1 (MQ=255)
                                                                                          ttCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACAt                                           >  7:311063/1‑139 (MQ=255)
                                                                                          ttCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCAt                                                >  4:225962/1‑134 (MQ=255)
                                                                                          ttCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCAt                                                <  3:225962/134‑1 (MQ=255)
                                                                                             aagcagCTGCGTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTATTTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTa                                         <  8:316767/138‑1 (MQ=255)
                                                                                                  gctgctTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGc                                    >  4:99630/1‑138 (MQ=255)
                                                                                                    tgctTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACt                                                        <  3:144484/116‑1 (MQ=255)
                                                                                                    tgctTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACt                                                        >  4:144484/1‑116 (MQ=255)
                                                                                                    tgctTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAg                                 >  2:304943/1‑139 (MQ=255)
                                                                                                    tgctTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAg                                 >  4:115195/1‑139 (MQ=255)
                                                                                                     gctTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAg                                                              >  3:125075/1‑109 (MQ=255)
                                                                                                     gctTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAg                                                              <  4:125075/109‑1 (MQ=255)
                                                                                                     gctTCACACTTTACGATGCTGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGc                                >  3:205522/1‑139 (MQ=255)
                                                                                                      ctTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAg                                 <  2:62939/137‑1 (MQ=255)
                                                                                                             cTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCg                        <  8:67398/139‑1 (MQ=255)
                                                                                                                tACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggc                                                                                                 >  8:324541/1‑63 (MQ=255)
                                                                                                                tACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggc                                                                                                 <  7:324541/63‑1 (MQ=255)
                                                                                                                tACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTAt                     >  5:31938/1‑139 (MQ=255)
                                                                                                                      gCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGa                                              <  2:31972/108‑1 (MQ=255)
                                                                                                                      gCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGa                                              >  1:31972/1‑108 (MQ=255)
                                                                                                                       cTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGCCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGc              >  7:152378/1‑139 (MQ=255)
                                                                                                                        tGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCt             >  2:14640/1‑139 (MQ=255)
                                                                                                                        tGACTGTAGGGCATGGAATTGTTTCTCAAATCACGGCACTGTTAATTTCTACGGCTACGGTTATTGTGGGCACAATAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCt             >  4:110877/1‑139 (MQ=255)
                                                                                                                        tGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggc                                                                                                 >  6:236675/1‑55 (MQ=255)
                                                                                                                        tGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTctacggc                                                                                                 <  5:236675/55‑1 (MQ=255)
                                                                                                                        tGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCaa                 <  7:291733/135‑1 (MQ=255)
                                                                                                                        tGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCaa                 >  8:291733/1‑135 (MQ=255)
                                                                                                                        tGACTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCt             >  8:86329/1‑139 (MQ=255)
                                                                                                                          aCTGTAGGGCATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCttt           >  3:57036/1‑139 (MQ=255)
                                                                                                                               aGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATAc      >  5:181101/1‑139 (MQ=255)
                                                                                                                                 gggATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATACGt    <  3:178843/139‑1 (MQ=255)
                                                                                                                                 gggATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATACGt    >  6:375701/1‑139 (MQ=255)
                                                                                                                                   gATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATACGTCg  >  6:318071/1‑139 (MQ=255)
                                                                                                                                   |                                                                                                                                          
TAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGAAGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGAGCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGCGTATCCAAAGCTTTTATACGTCG  >  CP006881/1671302‑1671571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A