Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A17 F55 I4 R1	119	110.4	4066752	95.0%	3863414	126.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	3,892,629	C→T	E12K (GAA→AAA)	U712_20070 ←	Inosose isomerase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	3,892,629	0	C	T	98.5%	446.3 / ‑2.5	129	E12K (GAA→AAA)	U712_20070	Inosose isomerase
Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (65/62); total (66/63)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.47e-01

Only 100 of 129 total aligned reads displayed.

TATTCCGCAAGGTCATCCAATGAATGATCTTTTAAGTACTCCGGCAGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTCCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCTCAGCTTATGCCAGACC  >  CP006881/3892502‑3892759

tatTCCGCAAGGTCATCCAATGAATGATCTTTTAAGTACTCCGGCAGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCg                                                                                                                         >  6:291389/1‑139 (MQ=255)

  ttCCGCAAGGTCATCCAATGAATGATCTTTTAAGTACTCCGGCAGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGc                                                                                                                        <  7:502585/138‑1 (MQ=255)

  ttCCGCAAGGTCATCCAATGAATGATCTTTTAAGTACTCCGGCAGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCt                                                                                                                       >  5:379344/1‑139 (MQ=255)

      gCAAGGTCATCCAATGAATGATCTTTTAAGTACTCCGGCAGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCAt                                                                                                                   <  8:73678/139‑1 (MQ=255)

      gCAAGGTCATCCAATGAATGATCTTTTAAGTACTCCGGCAGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCAt                                                                                                                   <  2:180501/139‑1 (MQ=255)

               tCCAATGAATGATCTTTTAAGTACTCCGGCAGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACa                                                                                                            >  4:90636/1‑137 (MQ=255)

               tCCAATGAATGATCTTTTAAGTACTCCGGCAGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGATCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACaaa                                                                                                          >  1:248672/1‑139 (MQ=255)

                  aatgaatgATCTTTTAAGTACTCCGGGAGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTCAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGtt                                                                                                       <  6:507120/139‑1 (MQ=255)

                      aatgaTCTTTTAAGTACTCCGGCAGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCAt                                                                                                   >  3:105268/1‑139 (MQ=255)

                           tgttttAAGTTCGCCGGCAGCCTATCCATAGTACGGATTTCAATATAATCATAGCCAAGCTTTTCGCATAGTTCTAAATCCATTTTAAGGTTTGAGTTTTTCAATGTTGTAGCATCATTAAAACAAAGTTTCATGCCAg                                                                                              <  7:343809/137‑1 (MQ=255)

                                    tACTCCGGCAGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTcccc                                                                                       >  1:112737/1‑137 (MQ=255)

                                      cTCCGGCAGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATc                                                                                   <  6:334464/139‑1 (MQ=255)

                                      cTCCGGCAGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATc                                                                                   >  6:116525/1‑139 (MQ=255)

                                       tCCGGCAGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCt                                                                                  >  7:27381/1‑139 (MQ=255)

                                         cGGCAGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGc                                                                                >  3:176339/1‑139 (MQ=255)

                                         cGGCAGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGc                                                                                >  4:252292/1‑139 (MQ=255)

                                         cGGCAGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGc                                                                                >  8:435747/1‑139 (MQ=255)

                                         cGGCAGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGc                                                                                >  1:23612/1‑139 (MQ=255)

                                             aGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGttt                                                                            <  1:382419/139‑1 (MQ=255)

                                               cTTATCCATAGTACTGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTACATCCAGTTTAATGTTTGAGTTTTTCAATGTTGTAGCTTCATTAAAAGAAAGATTGATGCCAGACTCACCCCTCTGCGTTTTa                                                                          <  4:65001/139‑1 (MQ=255)

                                               cTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTa                                                                          <  8:239509/139‑1 (MQ=255)

                                                  aTCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGa                                                                        <  6:78593/138‑1 (MQ=255)

                                                   tCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGata                                                                      >  5:341758/1‑139 (MQ=255)

                                                         gTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAgg                                                                <  1:192065/139‑1 (MQ=255)

                                                         gTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAgg                                                                >  4:30577/1‑139 (MQ=255)

                                                         gTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGATTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAgg                                                                <  4:436921/139‑1 (MQ=255)

                                                          tACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAggg                                                               >  2:261167/1‑139 (MQ=255)

                                                               aTTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGtta                                                          >  6:34021/1‑138 (MQ=255)

                                                               aTTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTCCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTc                                                          >  7:202735/1‑139 (MQ=255)

                                                               aTTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTATTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTc                                                          >  1:80094/1‑139 (MQ=255)

                                                               aTTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGATTAAGGATTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGACAGACTCCCCCATATGCGTTTTACATATGAAGGGAGTTc                                                          >  6:306115/1‑139 (MQ=255)

                                                                tttCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGaa                                                                  >  3:377759/1‑130 (MQ=255)

                                                                tttCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGaa                                                                  <  4:377759/130‑1 (MQ=255)

                                                                 ttCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAg                                                                                              <  1:94698/101‑1 (MQ=255)

                                                                    aaTATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGttt                                                                                                      <  8:118153/90‑1 (MQ=255)

                                                                    aaTATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGttt                                                                                                      >  7:118153/1‑90 (MQ=255)

                                                                      tataATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGa                                                   <  7:165210/139‑1 (MQ=255)

                                                                         aaTCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAgg                                                >  3:240267/1‑139 (MQ=255)

                                                                           tCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGttt                                                                            <  2:416298/109‑1 (MQ=255)

                                                                           tCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGttt                                                                            >  1:416298/1‑109 (MQ=255)

                                                                           tCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCt                                              >  7:387468/1‑139 (MQ=255)

                                                                           tCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCt                                              <  4:240267/139‑1 (MQ=255)

                                                                           tCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGGTTTCCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCt                                              <  8:202735/139‑1 (MQ=255)

                                                                             aTAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTg                                             <  6:236426/138‑1 (MQ=255)

                                                                             aTAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTg                                             <  2:23612/138‑1 (MQ=255)

                                                                                gCCATGCTTTTCGCATATTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAgg                                                                >  7:98456/1‑116 (MQ=255)

                                                                                gCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGc                                         >  8:357662/1‑139 (MQ=255)

                                                                                    tGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGt                                            >  6:246136/1‑132 (MQ=255)

                                                                                    tGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTATCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCat                                      >  8:87685/1‑138 (MQ=255)

                                                                                    tGCTTTTCGCATAGTTCTAAATCCAGTATAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCat                                      >  2:136214/1‑138 (MQ=255)

                                                                                     gCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCata                                     >  1:171468/1‑138 (MQ=255)

                                                                                      cTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTa                                                                          >  2:118080/1‑100 (MQ=255)

                                                                                      cTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTa                                                                          <  1:118080/100‑1 (MQ=255)

                                                                                      cTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATc                                   <  7:194830/139‑1 (MQ=255)

                                                                                         ttCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCccg                                >  2:412913/1‑139 (MQ=255)

                                                                                         ttCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCccg                                >  8:298244/1‑139 (MQ=255)

                                                                                         ttCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCccg                                >  8:144759/1‑139 (MQ=255)

                                                                                          tCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCccgc                               >  2:217482/1‑139 (MQ=255)

                                                                                           cGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCccgcc                              >  3:101535/1‑139 (MQ=255)

                                                                                            gattAGTTCTAAATCAATTTTAAGGTTTGAGTTTTTCAATTTTGTCGCTTCATTAAAACAAAGTTTCATGCCATACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGTAAGGCTGTCGCCATATCccgcc                              <  6:482953/135‑1 (MQ=255)

                                                                                             cATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGa                            <  6:173757/139‑1 (MQ=255)

                                                                                               tAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAAc                          <  6:379344/139‑1 (MQ=255)

                                                                                                 gTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCTGGAAGGCTGTCGCCATATCCCGCCGAACt                         <  3:5133/138‑1 (MQ=255)

                                                                                                 gTTCTAAATCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACt                         <  1:261167/138‑1 (MQ=255)

                                                                                                       aaTCCAGTTTAAGTTTTGAGTTTTTCAATGTTGTCTCTTCATTAAAACAAAGTTTCATGACAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCt                  <  6:345450/139‑1 (MQ=255)

                                                                                                       aaTCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGat                                                                       <  4:192077/86‑1 (MQ=255)

                                                                                                       aaTCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGat                                                                       >  3:192077/1‑86 (MQ=255)

                                                                                                       aaTCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCt                  <  7:171892/139‑1 (MQ=255)

                                                                                                       aaTCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCt                  <  8:387468/139‑1 (MQ=255)

                                                                                                       aaTCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCt                  <  7:298244/139‑1 (MQ=255)

                                                                                                       aaTCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCt                  <  7:413802/139‑1 (MQ=255)

                                                                                                       aaTCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCt                  <  5:402996/139‑1 (MQ=255)

                                                                                                       aaTCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCt                  <  1:412913/139‑1 (MQ=255)

                                                                                                       aaTCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCt                  <  3:90636/139‑1 (MQ=255)

                                                                                                       aaTCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCt                  <  3:462414/139‑1 (MQ=255)

                                                                                                       aaTCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCt                  <  2:95430/139‑1 (MQ=255)

                                                                                                       aaTCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCt                  <  3:270709/139‑1 (MQ=255)

                                                                                                        aTCCAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCTc                 <  7:144759/139‑1 (MQ=255)

                                                                                                           cAGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGCAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCTCAg               <  3:151342/138‑1 (MQ=255)

                                                                                                            ggTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCTCAGCt             <  1:226930/138‑1 (MQ=255)

                                                                                                            aGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTa                                                                          <  4:345842/78‑1 (MQ=255)

                                                                                                            aGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCccgcc                              >  6:143677/1‑122 (MQ=255)

                                                                                                            aGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCccgcc                              <  5:143677/122‑1 (MQ=255)

                                                                                                            aGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCccgcc                              >  2:22957/1‑122 (MQ=255)

                                                                                                            aGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAAc                          <  8:192676/126‑1 (MQ=255)

                                                                                                            aGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCTCAGCt             >  6:369612/1‑139 (MQ=255)

                                                                                                            aGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCTCAGCt             >  1:102855/1‑139 (MQ=255)

                                                                                                            aGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCTCAGCt             >  1:283699/1‑139 (MQ=255)

                                                                                                            aGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCACGCCGAACTCCATGCTCAGCt             >  7:490980/1‑139 (MQ=255)

                                                                                                            aGTTTAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATACCGCCGAACTCCATGCTCAGCt             >  3:317746/1‑139 (MQ=255)

                                                                                                              tttAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCt                  <  8:192427/132‑1 (MQ=255)

                                                                                                              tttAAGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCt                  >  7:192427/1‑132 (MQ=255)

                                                                                                                  aGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAATCAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCTCAGCTTATGcc       <  1:136214/139‑1 (MQ=255)

                                                                                                                  aGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCTCAGCTTATGcc       <  3:30577/139‑1 (MQ=255)

                                                                                                                  aGGTTTGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCTCAGCTTATGcc       <  5:367573/139‑1 (MQ=255)

                                                                                                                     tttGAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCTCAGCTTATGCCAGa    <  7:435747/139‑1 (MQ=255)

                                                                                                                        gAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTa                                                                          >  2:482662/1‑66 (MQ=255)

                                                                                                                        gAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTa                                                                          <  1:482662/66‑1 (MQ=255)

                                                                                                                        gAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCTCAGCTTATGCCAGAcc  >  7:474207/1‑138 (MQ=255)

                                                                                                                        gAGTTTTTCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCTCAGCTTATGCCAGAcc  >  1:473290/1‑138 (MQ=255)

TATTCCGCAAGGTCATCCAATGAATGATCTTTTAAGTACTCCGGCAGCTTATCCATAGTACGGATTTCAATATAATCATAGCCATGCTTTTCGCATAGTTCTAAATCCAGTTTAAGGTTTGAGTTTTCCAATGTTGTCGCTTCATTAAAACAAAGTTTCATGCCAGACTCCCCCATCTGCGTTTTAGATATGAAGGGAGTTCGGCAGGAAGGCTGTCGCCATATCCCGCCGAACTCCATGCTCAGCTTATGCCAGACC  >  CP006881/3892502‑3892759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A