Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F56 I0 R1 218 83.1 3292392 95.3% 3137649 126.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 1,653,736 C→T 83.7% L194F (CTT→TTT)  U712_08495 → GTP‑sensing transcriptional pleiotropic repressor CodY

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068811,653,7360CT83.7% 184.6 / 30.2 88L194F (CTT→TTT) U712_08495GTP‑sensing transcriptional pleiotropic repressor CodY
Reads supporting (aligned to +/- strand):  ref base C (4/10);  new base T (33/39);  total (38/50)
Fisher's exact test for biased strand distribution p-value = 3.77e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.16e-01

TTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGT  >  CP006881/1653602‑1653873
                                                                                                                                      |                                                                                                                                         
ttGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGa                                                                                                                                       >  1:358355/1‑139 (MQ=255)
 tGTCGGAATGGAAAAACTAAGAGAAACAGCAGAATAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATTGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGa                                                                                                                                       <  4:70281/138‑1 (MQ=255)
  gTCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACg                                                                                                                                     >  3:46060/1‑139 (MQ=255)
   tCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGCTTGACgg                                                                                                                                    <  3:18132/139‑1 (MQ=255)
     ggAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGCTTGACGGa                                                                                                                                   >  7:226011/1‑138 (MQ=255)
        aTGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAAt                                                                                                                                >  8:333465/1‑138 (MQ=255)
             aaTCCTAAGCGAAAAACCACAAGAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGATTTCTTACAGTGAGCTTGAATCAATTGAGCACATTTTTGAGGAGCTTGACGGATATGAAGGt                                                                                                                          <  8:408704/139‑1 (MQ=255)
                 cTAAGAGAAAAAGCAGAAGAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGtcttc                                                                                                                      >  8:120731/1‑139 (MQ=255)
                          aaaGCAGAAGAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGc                                                                                                               >  5:304335/1‑137 (MQ=255)
                           aaGCAGAAGAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAg                                                                                                            >  2:200355/1‑139 (MQ=255)
                             gagacagaaATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGCCTATGAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTa                                                                                                          <  4:100873/134‑1 (MQ=255)
                                         gaacatgaagcaagaagataTGCTGTCGTACAAATGGCTTTCAGCTCGCTTTCTTACTGTGAGCTTGAAGCAATTGAGCACTTTTTTGTGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGAc                                                                                               <  2:200866/132‑1 (MQ=255)
                                         gAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGAc                                                                                               <  8:284926/138‑1 (MQ=255)
                                            gagGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCgtg                                                                                           <  7:333465/139‑1 (MQ=255)
                                             agGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCgtgt                                                                                          >  5:128733/1‑139 (MQ=255)
                                             agGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCgtgt                                                                                          <  1:119152/139‑1 (MQ=255)
                                             agGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCgtgt                                                                                          <  8:221246/139‑1 (MQ=255)
                                               gaagcaagaagcaaACCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTGTGACGGAAATGAAGGTCTTCTGGTTGCAAGTAAAATAGCTGAcctgtct                                                                                         >  3:100873/1‑133 (MQ=255)
                                                 agcaagaagcaaAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCgg                                                                                       >  1:242589/1‑138 (MQ=255)
                                                      gaagcaaAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTAc                                                                                 <  4:193589/139‑1 (MQ=255)
                                                      gaagcaaAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTAc                                                                                 <  3:274196/139‑1 (MQ=255)
                                                       aagcaaAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTAcc                                                                                <  2:291522/139‑1 (MQ=255)
                                                         gcaaAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCg                                                                              <  1:200355/139‑1 (MQ=255)
                                                         gcaaAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCg                                                                              <  5:76588/139‑1 (MQ=255)
                                                         gcaaAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGGCTTCTTGTTGCAAGTAAAATTGCTGACCGTGGCGGCATTACCCg                                                                              <  1:267592/139‑1 (MQ=255)
                                                         gcaaAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCg                                                                              <  2:196720/139‑1 (MQ=255)
                                                           aaaGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGtt                                                                            <  1:54375/139‑1 (MQ=255)
                                                              gCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTg                                                                         <  2:263974/139‑1 (MQ=255)
                                                              gCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTg                                                                         <  4:400840/139‑1 (MQ=255)
                                                                         aaTGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGa                                                                                                <  2:172200/105‑1 (MQ=255)
                                                                         aaTGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGa                                                                                                >  1:172200/1‑105 (MQ=255)
                                                                            ggCTATCAGCTCGCTTTCTTACAGTGAGCTTTAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCAt                                                                                    <  1:174053/114‑1 (MQ=255)
                                                                            ggCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCAt                                                                                    >  2:174053/1‑114 (MQ=255)
                                                                            ggCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGtt                                                                            <  4:253004/122‑1 (MQ=255)
                                                                            ggCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGtt                                                                            >  3:253004/1‑122 (MQ=255)
                                                                               taacAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTAACCGTGTAGGCATTACCCGTACTGTTATTGTGAACGCACt                                                         >  4:344897/4‑138 (MQ=255)
                                                                                 tCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCa                                                       <  2:358355/138‑1 (MQ=255)
                                                                                 tCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCa                                                       <  4:311219/138‑1 (MQ=255)
                                                                                 tCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCa                                                       <  8:226011/138‑1 (MQ=255)
                                                                                     cTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAg                                                  <  3:258546/139‑1 (MQ=255)
                                                                                       cGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCg                                                                              >  4:55030/1‑109 (MQ=255)
                                                                                       cGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCg                                                                              <  3:55030/109‑1 (MQ=255)
                                                                                       cGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTCTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGt                                                                        >  3:225628/1‑115 (MQ=255)
                                                                                       cGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTCTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGt                                                                        <  4:225628/115‑1 (MQ=255)
                                                                                        gCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTg                                               >  4:208024/1‑139 (MQ=255)
                                                                                            tCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGgag                                            <  2:30486/138‑1 (MQ=255)
                                                                                            tCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGga                                             <  6:346028/137‑1 (MQ=255)
                                                                                                 cAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAgcgc                                       <  7:120731/138‑1 (MQ=255)
                                                                                                 cAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAgcgc                                       <  2:110101/138‑1 (MQ=255)
                                                                                                    tGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCt                                                                                                  >  5:155901/1‑76 (MQ=255)
                                                                                                    tGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCt                                                                                                  <  6:155901/76‑1 (MQ=255)
                                                                                                    tGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGtt                                                                            <  2:334805/98‑1 (MQ=255)
                                                                                                    tGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGtt                                                                            >  1:334805/1‑98 (MQ=255)
                                                                                                    tGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGgt                                   >  6:40543/1‑139 (MQ=255)
                                                                                                      aGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGtt                                                                            <  2:97541/96‑1 (MQ=255)
                                                                                                      aGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGtt                                                                            >  1:97541/1‑96 (MQ=255)
                                                                                                      aGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCa                                                       >  6:8672/1‑117 (MQ=255)
                                                                                                      aGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCa                                                       <  5:8672/117‑1 (MQ=255)
                                                                                                      aGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGgtgt                                 >  7:307383/1‑139 (MQ=255)
                                                                                                      aGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGgtgt                                 >  6:94506/1‑139 (MQ=255)
                                                                                                      aGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGgtgt                                 >  7:166355/1‑139 (MQ=255)
                                                                                                      aGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGgtgt                                 >  6:50059/1‑139 (MQ=255)
                                                                                                      aGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGgtgt                                 >  1:236047/1‑139 (MQ=255)
                                                                                                      aGCTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGgagt                                 >  2:34648/1‑139 (MQ=255)
                                                                                                      aGCTTGAAGCAATTGAGCACATTATTGACGAGTTTGACGGAAATGAAGGTCTTCTTTTTGAAAGTAAAATTCCTGACCGTGTCGGCATTACCAGTTCTGTTTTTGTCAACGAACTCAGAAAGCTGGAGAGAGCCGgtgt                                 >  8:365505/1‑139 (MQ=255)
                                                                                                        cTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCgtgt                                                                                          >  3:236168/1‑80 (MQ=255)
                                                                                                        cTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCgtgt                                                                                          <  4:236168/80‑1 (MQ=255)
                                                                                                        cTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTa                               >  4:158927/1‑139 (MQ=255)
                                                                                                        cTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTa                               >  4:187152/1‑139 (MQ=255)
                                                                                                        cTTGAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCACTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTa                               >  3:89859/1‑139 (MQ=255)
                                                                                                           gaagaaATTTAGCAGATTTTTGAGGAGTTTGTCTGAAATGAAGTTCTTGTTGTTGCAAGTAAAATTGCTGAGCGTGTCGGAATTACCGGTTCTGTTTTTGTGATCGCACTCAGAAAGGTGGAGAGCGCCGGTGTTATc                             <  7:365505/138‑1 (MQ=255)
                                                                                                           gAATCAATTGAGCTCATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTACTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATc                             <  8:11750/138‑1 (MQ=255)
                                                                                                           gAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTAt                              <  5:201824/137‑1 (MQ=255)
                                                                                                           gAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTAt                              <  6:304335/137‑1 (MQ=255)
                                                                                                           gAAGCAATTGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATc                             <  2:236047/138‑1 (MQ=255)
                                                                                                                aaTTGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCgtgt                                                                                          >  6:174200/1‑72 (MQ=255)
                                                                                                                aaTTGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCgtgt                                                                                          <  5:174200/72‑1 (MQ=255)
                                                                                                                  ttGAGCACATTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTc                        >  4:333199/1‑136 (MQ=255)
                                                                                                                  ttGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTc                        >  1:370608/1‑136 (MQ=255)
                                                                                                                          aTTTTTGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAg             >  3:60388/1‑139 (MQ=255)
                                                                                                                            ttttGAGGAGATTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCAtt               >  1:363386/1‑135 (MQ=255)
                                                                                                                            ttttGAGGAGATTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCAtt               <  2:363386/135‑1 (MQ=255)
                                                                                                                             tttGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGa           <  2:370608/138‑1 (MQ=255)
                                                                                                                               tGAGGAGTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAAt         <  8:166355/138‑1 (MQ=255)
                                                                                                                               tGAGGAGCGTGACGGAACTGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCAATACCCGATCTGTTATGGTGAACGCACTCAGAACGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAAt         <  6:113906/138‑1 (MQ=255)
                                                                                                                                 gggagTTTGTCGGTATTTAAGGTGTTGTTGTTGCATGTAAATTTGGTGAGGGTGTCGGCATTACCCGTTATGTATTTTTGTACGCACTAACTATGTTGGAGAGCGGCGGTGTTATCGAGTCTAGATCATTAGGAATGaa      <  2:191530/138‑1 (MQ=255)
                                                                                                                                  ggagTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGaaa     <  1:152056/139‑1 (MQ=255)
                                                                                                                                   gagTTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAg    <  3:158927/139‑1 (MQ=255)
                                                                                                                                      cTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCgtgt                                                                                          >  8:269872/1‑50 (MQ=255)
                                                                                                                                      cTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCgtgt                                                                                          <  7:269872/50‑1 (MQ=255)
                                                                                                                                      cTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAAAGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAgga  >  1:191530/1‑137 (MQ=255)
                                                                                                                                      |                                                                                                                                         
TTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGT  >  CP006881/1653602‑1653873

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A