mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 30,182 | C→T | 100% | intergenic (+147/‑96) | U712_00120 → / → U712_20865 | Sigma‑K factor‑processing regulatory protein BofA/16S ribosomal RNA |
| RA | CP006881 | 44,160 | T→C | 7.1% | I80I (ATT→ATC) | U712_00185 → | Ribosomal RNA small subunit methyltransferase I |
| RA | CP006881 | 70,964 | T→G | 19.0% | F146V (TTT→GTT) | U712_00330 → | Stage II sporulation protein E |
| RA | CP006881 | 224,585 | G→T | 15.0% | A118E (GCA→GAA) | U712_01035 ← | Uncharacterized protein ybdN |
| RA | CP006881 | 238,270 | G→T | 19.5% | Q22K (CAA→AAA) | U712_01105 ← | Uncharacterized protein ybfE |
| RA | CP006881 | 327,655 | G→A | 6.6% | L11L (CTG→CTA) | U712_01565 → | Alpha‑amylase |
| RA | CP006881 | 363,015 | G→T | 5.9% | W29L (TGG→TTG) | U712_01715 → | Nitrate transporter |
| RA | CP006881 | 419,825 | A→C | 23.3% | L51R (CTT→CGT) | U712_01910 ← | Uncharacterized protein yczF |
| RA | CP006881 | 463,393 | G→T | 20.1% | E53* (GAA→TAA) | U712_02135 → | Uncharacterized protein yczI |
| RA | CP006881 | 735,147 | A→C | 21.8% | intergenic (+17/‑50) | U712_03560 → / → U712_03565 | Rhamnogalacturonan lyase yesW/Rhamnogalacturonan lyase yesX |
| RA | CP006881 | 746,458 | G→A | 5.2% | C156Y (TGT→TAT) | U712_03600 → | Putative glucosidase lplD |
| RA | CP006881 | 770,560 | G→A | 7.6% | V146I (GTT→ATT) | U712_03720 → | Putative aldehyde dehydrogenase yfmT |
| RA | CP006881 | 787,781 | T→A | 15.5% | L323F (TTA→TTT) | U712_03815 ← | Fe(3+)‑citrate import system permease protein yfmD |
| RA | CP006881 | 800,411 | C→T | 6.8% | T242M (ACG→ATG) | U712_03875 → | Nitric oxide synthase oxygenase |
| RA | CP006881 | 825,618 | G→A | 6.3% | A31A (GCG→GCA) | U712_04000 → | Uncharacterized protein yfkI |
| RA | CP006881 | 915,787 | T→G | 13.4% | noncoding (53/72 nt) | U712_21220 → | tRNA‑Gly |
| RA | CP006881 | 924,066:1 | +A | 100% | intergenic (‑46/‑233) | U712_04490 ← / → U712_04495 | Vegetative catalase/Aliphatic sulfonates import ATP‑binding protein SsuB |
| RA | CP006881 | 948,353 | T→G | 23.2% | L140R (CTT→CGT) | U712_04645 → | putative lipoprotein yhcJ |
| RA | CP006881 | 956,848 | Δ1 bp | 6.0% | coding (2404/3591 nt) | U712_04675 → | Endonuclease YhcR |
| RA | CP006881 | 983,107 | C→A | 11.7% | *292Y (TAG→TAT) | U712_04800 ← | HTH‑type transcriptional regulator CitR |
| RA | CP006881 | 983,115 | G→T | 23.8% | H290N (CAT→AAT) | U712_04800 ← | HTH‑type transcriptional regulator CitR |
| RA | CP006881 | 986,184 | C→A | 24.0% | intergenic (+50/‑200) | U712_04810 → / → U712_04815 | putative oxidoreductase yhdF/putative amino acid permease YhdG |
| RA | CP006881 | 986,209 | C→A | 20.4% | intergenic (+75/‑175) | U712_04810 → / → U712_04815 | putative oxidoreductase yhdF/putative amino acid permease YhdG |
| RA | CP006881 | 1,103,575 | A→C | 26.2% | K245N (AAA→AAC) | U712_05435 → | ATP‑dependent helicase/nuclease subunit A |
| RA | CP006881 | 1,105,253 | T→G | 22.9% | F805V (TTT→GTT) | U712_05435 → | ATP‑dependent helicase/nuclease subunit A |
| RA | CP006881 | 1,131,023 | G→T | 10.6% | W416L (TGG→TTG) | U712_05570 → | putative HTH‑type transcriptional regulator yisV |
| RA | CP006881 | 1,146,194 | T→C | 7.1% | I267V (ATC→GTC) | U712_05655 ← | Uncharacterized protein yitO |
| RA | CP006881 | 1,167,995 | C→A | 8.4% | intergenic (‑45/‑204) | U712_05785 ← / → U712_05790 | putative membrane protein yjzD/Uncharacterized protein yjaU |
| RA | CP006881 | 1,175,961 | T→G | 8.2% | R156R (CGT→CGG) | U712_05840 → | Oligopeptide transport ATP‑binding protein AppF |
| RA | CP006881 | 1,269,691 | T→G | 12.6% | R32R (CGT→CGG) | U712_06415 → | putative oxidoreductase uxuB |
| RA | CP006881 | 1,392,422 | C→T | 5.3% | intergenic (+1106/‑200) | U712_07110 → / → U712_07120 | 2,3‑diketo‑5‑methylthiopentyl‑1‑phosphate enolase/Acireductone dioxygenase |
| RA | CP006881 | 1,415,681 | G→A | 5.1% | G425S (GGC→AGC) | U712_07270 → | Zinc‑transporting ATPase |
| RA | CP006881 | 1,461,314 | A→T | 5.8% | H362L (CAC→CTC) | U712_07505 → | Molybdopterin molybdenumtransferase |
| RA | CP006881 | 1,474,324 | C→A | 5.7% | intergenic (+123/‑22) | U712_07565 → / → U712_07570 | PTS system fructose‑specific EIIABC component/Signal peptidase I T |
| RA | CP006881 | 1,528,831 | G→T | 11.4% | intergenic (‑84/‑56) | U712_07870 ← / → U712_07875 | Uncharacterized protein ylbA/Uncharacterized protein ylbB |
| RA | CP006881 | 1,586,405 | T→G | 7.4% | L237L (CTT→CTG) | U712_08170 → | Carbamoyl‑phosphate synthase pyrimidine‑specific small chain |
| RA | CP006881 | 1,606,303 | G→A | 6.0% | V139I (GTT→ATT) | U712_08265 → | putative coenzyme A biosynthesis bifunctional protein CoaBC |
| RA | CP006881 | 1,628,801 | A→T | 7.6% | E18D (GAA→GAT) | U712_08375 → | Ribonuclease 3 |
| RA | CP006881 | 1,653,736 | C→T | 83.7% | L194F (CTT→TTT) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,653,890 | T→C | 16.7% | L245P (CTA→CCA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,657,920 | T→A | 19.6% | V255D (GTC→GAC) | U712_08520 → | Flagellar motor switch protein FliG |
| RA | CP006881 | 1,672,787 | G→T | 26.0% | M1M (ATG→ATT) † | U712_08615 → | Flagellar biosynthesis protein flhF |
| RA | CP006881 | 1,700,738 | A→G | 6.3% | D272G (GAC→GGC) | U712_08745 → | tRNA pseudouridine synthase B |
| RA | CP006881 | 1,862,707 | T→C | 79.3% | A27A (GCT→GCC) | U712_09270 → | Uncharacterized protein yncE |
| RA | CP006881 | 1,880,092 | A→G | 6.0% | Q131R (CAA→CGA) | U712_09385 → | Metallothiol transferase fosB |
| RA | CP006881 | 1,955,478 | G→T | 22.5% | intergenic (+41/+53) | U712_09675 → / ← U712_21250 | Uncharacterized protein yoeB/tRNA‑Arg |
| RA | CP006881 | 1,973,569 | A→C | 23.6% | L385R (CTT→CGT) | U712_09760 ← | Putative transporter yoaB |
| RA | CP006881 | 1,984,502 | T→G | 23.2% | V270G (GTG→GGG) | U712_09805 → | Putative 4‑hydroxyphenylacetate 3‑monooxygenase yoaI |
| RA | CP006881 | 2,054,382 | A→C | 100% | intergenic (+60/‑41) | U712_10180 → / → U712_10185 | Putative aldehyde dehydrogenase dhaS/Squalene‑‑hopene cyclase |
| RA | CP006881 | 2,068,516 | A→G | 5.0% | S137P (TCA→CCA) | U712_10230 ← | D‑gamma‑glutamyl‑meso‑diaminopimelic acid endopeptidase CwlS |
| RA | CP006881 | 2,204,721 | T→G | 11.1% | K274T (AAA→ACA) | U712_11055 ← | Stage IV sporulation protein A |
| RA | CP006881 | 2,235,729 | C→T | 18.8% | E26K (GAA→AAA) | U712_11225 ← | Transcriptional regulatory protein resD |
| RA | CP006881 | 2,260,497 | A→C | 18.5% | G22G (GGT→GGG) | U712_11390 ← | Stage V sporulation protein AB |
| RA | CP006881 | 2,289,002 | T→C | 6.9% | Q216Q (CAA→CAG) | U712_11585 ← | putative oxidoreductase yqjQ |
| RA | CP006881 | 2,348,895 | T→G | 15.8% | E226D (GAA→GAC) | U712_11880 ← | Biotin carboxylase 1 |
| RA | CP006881 | 2,370,844 | A→G | 5.1% | K111R (AAA→AGA) | U712_12015 → | HTH‑type transcriptional regulator sinR |
| RA | CP006881 | 2,434,163 | T→C | 6.3% | T114A (ACA→GCA) | U712_12400 ← | Uncharacterized protein yqfD |
| RA | CP006881 | 2,466,472 | A→T | 5.4% | F12I (TTC→ATC) | U712_12585 ← | putative lipoprotein yqeF |
| RA | CP006881 | 2,500,381 | A→G | 5.4% | L119L (TTA→CTA) | U712_12785 ← | Uncharacterized protein yqbG |
| RA | CP006881 | 2,530,594 | A→G | 6.8% | V132A (GTG→GCG) | U712_12990 ← | UPF0033 protein yrkF |
| RA | CP006881 | 2,589,770 | T→G | 21.3% | V200G (GTT→GGT) | U712_13325 → | Putative peptidoglycan O‑acetyltransferase YrhL |
| RA | CP006881 | 2,628,932 | T→C | 6.3% | K207K (AAA→AAG) | U712_13535 ← | Putative cysteine desulfurase IscS 1 |
| JC | CP006881 | 2,785,279 | Δ3 bp | 5.7% | coding (628‑630/1023 nt) | U712_14360 ← | Glyceraldehyde‑3‑phosphate dehydrogenase 2 |
| RA | CP006881 | 2,791,937 | T→C | 6.2% | Y581C (TAC→TGC) | U712_14395 ← | DNA polymerase I |
| RA | CP006881 | 2,801,996 | G→A | 100% | A327T (GCC→ACC) | U712_14440 → | UPF0118 membrane protein ytvI |
| RA | CP006881 | 2,805,244 | T→C | 5.4% | E53G (GAA→GGA) | U712_14455 ← | 6‑phosphofructokinase |
| RA | CP006881 | 2,863,169 | C→A | 12.7% | intergenic (‑146/+130) | U712_14770 ← / ← U712_14775 | Catabolite control protein A/Protein AroA(G) |
| RA | CP006881 | 2,963,937 | G→A | 67.3% | intergenic (‑124/+156) | U712_15285 ← / ← U712_15290 | Manganese‑binding lipoprotein mntA/o‑succinylbenzoate synthase |
| RA | CP006881 | 2,966,941 | T→G | 14.9% | S211R (AGC→CGC) | U712_15300 ← | 1,4‑Dihydroxy‑2‑naphthoyl‑CoA synthase |
| RA | CP006881 | 2,991,089 | C→T | 5.4% | noncoding (76/86 nt) | U712_21340 ← | tRNA‑Leu |
| RA | CP006881 | 3,136,507 | T→G | 15.1% | T49T (ACA→ACC) | U712_16100 ← | putative hydrolase yutF |
| RA | CP006881 | 3,186,737 | T→A | 28.0% | I378F (ATC→TTC) | U712_16400 ← | 3‑ketoacyl‑CoA thiolase |
| RA | CP006881 | 3,221,911 | T→C | 5.7% | S127S (TCA→TCG) | U712_16590 ← | putative ABC transporter substrate‑binding lipoprotein yvrC |
| RA | CP006881 | 3,339,423 | T→G | 18.6% | R193R (AGG→CGG) | U712_17165 ← | Putative glycosyltransferase epsH |
| RA | CP006881 | 3,410,152 | C→A | 15.1% | D55Y (GAT→TAT) | U712_17510 ← | Pyrophosphatase ppaX |
| RA | CP006881 | 3,444,703 | A→C | 19.4% | V43G (GTC→GGC) | U712_17685 ← | UPF0750 membrane protein yvjA |
| RA | CP006881 | 3,578,466 | Δ1 bp | 100% | intergenic (‑59/‑76) | U712_18365 ← / → U712_18370 | Stage II sporulation protein Q/Putative phosphinothricin acetyltransferase YwnH |
| RA | CP006881 | 3,579,785 | Δ1 bp | 100% | coding (73/132 nt) | U712_18380 → | Hypothetical Protein |
| RA | CP006881 | 3,633,555 | C→A | 5.3% | R267I (AGA→ATA) | U712_18735 ← | Uncharacterized protein fadF |
| RA | CP006881 | 3,638,862 | A→T | 6.2% | L131I (TTA→ATA) | U712_18760 ← | putative ABC transporter ATP‑binding protein YwjA |
| RA | CP006881 | 3,676,319 | C→A | 11.0% | E142* (GAA→TAA) | U712_18940 ← | Putative HTH‑type transcriptional regulator ywgB |
| RA | CP006881 | 3,680,919 | T→C | 5.3% | N62D (AAT→GAT) | U712_18965 ← | putative transporter ywfM |
| RA | CP006881 | 3,681,575 | G→T | 33.6% | L181I (CTC→ATC) | U712_18970 ← | Octanoyl‑[GcvH]:protein N‑octanoyltransferase |
| RA | CP006881 | 3,681,984 | T→G | 13.3% | K44N (AAA→AAC) | U712_18970 ← | Octanoyl‑[GcvH]:protein N‑octanoyltransferase |
| RA | CP006881 | 3,686,491 | A→C | 10.6% | L284R (CTT→CGT) | U712_18995 ← | putative aspartate aminotransferase |
| RA | CP006881 | 3,699,895 | C→T | 6.0% | R35R (CGG→CGA) | U712_19055 ← | Hypothetical Protein |
| RA | CP006881 | 3,713,242 | C→A | 16.6% | L131F (TTG→TTT) | U712_19130 ← | Putative purine permease ywdJ |
| RA | CP006881 | 3,723,022 | G→A | 100% | intergenic (‑136/‑165) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,045 | T→C | 100% | intergenic (‑159/‑142) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,066:1 | +A | 94.0% | intergenic (‑180/‑121) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,067 | G→T | 100% | intergenic (‑181/‑120) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,091 | A→T | 100% | intergenic (‑205/‑96) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,095 | T→A | 100% | intergenic (‑209/‑92) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,097 | T→G | 100% | intergenic (‑211/‑90) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,118 | C→T | 100% | intergenic (‑232/‑69) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,121 | T→A | 100% | intergenic (‑235/‑66) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,130 | A→T | 100% | intergenic (‑244/‑57) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,162 | C→T | 100% | intergenic (‑276/‑25) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,166 | C→G | 100% | intergenic (‑280/‑21) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,183 | A→G | 100% | intergenic (‑297/‑4) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,204 | G→A | 100% | L6L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,210 | A→G | 100% | K8K (AAA→AAG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,222 | C→T | 100% | Y12Y (TAC→TAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,231 | C→A | 100% | N15K (AAC→AAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,236 | T→A | 100% | L17Q (CTA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,246 | T→C | 100% | F20F (TTT→TTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,248 | T→C | 100% | V21A (GTT→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,252 | T→A | 100% | S22S (TCT→TCA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,273 | 2 bp→TC | 100% | coding (87‑88/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,276 | A→G | 100% | R30R (AGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,291 | C→T | 100% | S35S (AGC→AGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,294 | G→A | 100% | M36I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,300 | C→T | 100% | I38I (ATC→ATT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,303 | A→T | 100% | G39G (GGA→GGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,306 | C→T | 100% | F40F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,336 | T→C | 100% | S50S (AGT→AGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,344 | C→T | 100% | S53F (TCT→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,351 | G→T | 100% | A55A (GCG→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,366 | T→C | 100% | A60A (GCT→GCC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,387 | A→T | 100% | T67T (ACA→ACT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,406 | C→A | 100% | L74M (CTG→ATG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,438 | T→C | 100% | T84T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,447 | T→C | 100% | T87T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,459 | T→C | 100% | T91T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,474 | A→G | 100% | R96R (CGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,483 | 2 bp→CA | 100% | coding (297‑298/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,492 | A→C | 100% | R102R (CGA→CGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,501 | G→A | 100% | L105L (CTG→CTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,505 | C→T | 100% | L107L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,534 | G→A | 100% | L116L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,549 | A→G | 100% | L121L (CTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,558 | T→C | 100% | I124I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,573 | A→G | 100% | T129T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,576 | G→A | 100% | G130G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,589 | G→C | 100% | A135P (GCT→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,616 | C→T | 100% | L144L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,642 | C→G | 100% | P152P (CCC→CCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,652 | C→T | 100% | L156L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,666 | G→A | 100% | G160G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,717 | T→C | 100% | L177L (CTT→CTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,729 | G→A | 100% | G181G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,738 | C→T | 100% | L184L (CTC→CTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,771 | C→T | 100% | F195F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,783 | C→T | 100% | F199F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,822 | A→G | 100% | S212S (TCA→TCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,853 | G→C | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,855 | A→G | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,879 | T→C | 100% | I231I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,888 | A→G | 100% | T234T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,897 | C→T | 100% | N237N (AAC→AAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,912 | G→A | 100% | M242I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,915 | C→T | 100% | V243V (GTC→GTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,933 | T→C | 100% | Y249Y (TAT→TAC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,939 | G→A | 100% | T251T (ACG→ACA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,942 | C→G | 100% | L252L (CTC→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,948 | C→T | 100% | P254P (CCC→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,952 | A→C | 100% | K256Q (AAA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,724,053 | C→T | 100% | E258E (GAG→GAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,078 | C→T | 100% | S250N (AGT→AAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,092 | T→C | 100% | A245A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,101 | A→C | 100% | L242L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,119 | A→G | 100% | F236F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,194 | A→G | 100% | S211S (AGT→AGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,200 | T→C | 100% | A209A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,208 | T→G | 100% | R207R (AGA→CGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,274 | C→T | 100% | E185K (GAA→AAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,392 | A→C | 100% | L145L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,446 | G→A | 100% | Y127Y (TAC→TAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,467 | T→C | 100% | K120K (AAA→AAG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,542 | A→G | 100% | S95S (TCT→TCC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,587 | C→T | 100% | G80G (GGG→GGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,623 | A→T | 100% | I68I (ATT→ATA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,659 | A→G | 100% | F56F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,678 | T→C | 100% | H50R (CAC→CGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,719 | G→A | 100% | D36D (GAC→GAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,749 | T→C | 100% | P26P (CCA→CCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,808 | G→A | 100% | L7L (CTA→TTA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,831 | C→T | 100% | intergenic (‑5/+35) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,849 | A→T | 100% | intergenic (‑23/+17) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,902 | A→C | 100% | A89A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,977 | T→C | 100% | Q64Q (CAA→CAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,980 | T→C | 100% | K63K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,010 | C→T | 100% | E53E (GAG→GAA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,025 | A→G | 100% | L48L (CTT→CTC) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,031 | C→T | 100% | A46A (GCG→GCA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,043 | C→A | 100% | A42A (GCG→GCT) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,049 | T→C | 100% | K40K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,082 | A→C | 100% | A29A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,205:1 | +T | 100% | intergenic (‑37/‑492) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,232 | A→C | 25.9% | intergenic (‑64/‑465) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,237 | A→G | 83.6% | intergenic (‑69/‑460) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,239 | 2 bp→AA | 100% | intergenic (‑71/‑457) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,751,874 | T→G | 28.9% | F149V (TTT→GTT) | U712_19340 → | Uncharacterized protein ywbG |
| RA | CP006881 | 3,905,563 | G→T | 12.6% | D86Y (GAT→TAT) | U712_20135 → | Uncharacterized protein yxcD |
| RA | CP006881 | 3,928,462 | A→C | 13.1% | T132P (ACC→CCC) | U712_20250 → | Uncharacterized protein yxaC |
| RA | CP006881 | 3,972,858 | T→G | 15.4% | intergenic (‑35/+47) | U712_21400 ← / ← U712_21405 | tRNA‑Asp/tRNA‑Glu |
| RA | CP006881 | 4,026,253 | C→T | 75.9% | A117T (GCG→ACG) | U712_20800 ← | Nucleoid occlusion protein |
| RA | Exported | 131 | G→C | 6.2% | intergenic (–/‑2847) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 2,205 | C→T | 81.5% | intergenic (–/‑773) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 2,206 | C→T | 11.6% | intergenic (–/‑772) | – / → eryR | –//vntifkey=4 |
| JC | Exported | 2,655 | Δ3 bp | 100% | intergenic (–/‑321) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 3,729 | T→G | 6.1% | intergenic (+14/‑142) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,735 | A→T | 9.2% | intergenic (+20/‑136) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,741 | G→T | 9.7% | intergenic (+26/‑130) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,743 | A→T | 5.0% | intergenic (+28/‑128) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,783 | G→T | 5.4% | intergenic (+68/‑88) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| JC | Exported | 3,843 | Δ5 bp | 100% | intergenic (+128/‑24) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 4,625 | A→C | 6.4% | K252T (AAG→ACG) | ampR → | /vntifkey=4 |
| RA | Exported | 4,648 | T→A | 10.2% | Y260N (TAC→AAC) ‡ | ampR → | /vntifkey=4 |
| RA | Exported | 4,649 | A→C | 7.4% | Y260S (TAC→TCC) ‡ | ampR → | /vntifkey=4 |
| RA | Exported | 5,049 | C→T | 100% | intergenic (+318/‑839) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 5,173 | T→G | 5.7% | intergenic (+442/‑715) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 6,006 | T→G | 5.5% | V40G (GTT→GGT) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,012 | A→C | 6.0% | Q42P (CAA→CCA) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,031 | A→C | 6.7% | A48A (GCA→GCC) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,033 | A→C | 5.1% | H49P (CAT→CCT) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,047 | A→C | 5.3% | S54R (AGC→CGC) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,256 | A→C | 5.1% | intergenic (+45/–) | lacZalpha → / – | /vntifkey=4/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP006881 | 166461–171323 | 176232–171336 | 14–9772 | 20 [19] | [14] 26 | U712_21020–[U712_21045] | U712_21020,U712_21025,U712_21030,U712_21035,U712_21040,[U712_21045] |
| * | * | ÷ | CP006881 | 245172 | 246111 | 940 | 21 [19] | [19] 20 | [U712_01140]–[U712_01145] | [U712_01140],[U712_01145] |
| * | * | ÷ | CP006881 | 1067445 | 1068612 | 1168 | 23 [17] | [11] 20 | U712_05250 | U712_05250 |
| * | * | ÷ | CP006881 | 1149043 | 1150711 | 1669 | 20 [18] | [19] 20 | U712_05685 | U712_05685 |
| * | * | ÷ | CP006881 | 1503064 | 1504650 | 1587 | 20 [18] | [19] 21 | U712_07740 | U712_07740 |
| * | * | ÷ | CP006881 | 1562233 | 1566646 | 4414 | 20 [19] | [19] 23 | U712_08060 | U712_08060 |
| * | * | ÷ | CP006881 | 2261285 | 2262067 | 783 | 21 [17] | [18] 21 | U712_11400 | U712_11400 |
| * | * | ÷ | CP006881 | 3725697 | 3728135 | 2439 | 20 [18] | [19] 23 | [U712_19210] | [U712_19210] |
| * | * | ÷ | CP006881 | 3757680 | 3759655 | 1976 | 21 [17] | [13] 25 | [U712_19375] | [U712_19375] |