Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F54 I0 R2 227 88.8 3424874 95.5% 3270754 127.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 2,631,395 G→T 13.3% Q402H (CAG→CAT)  U712_13545 → putative AAA domain‑containing protein YrvN

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,631,3950GT13.3% 249.3 / 22.5 94Q402H (CAG→CAT) U712_13545putative AAA domain‑containing protein YrvN
Reads supporting (aligned to +/- strand):  ref base G (42/39);  new base T (7/6);  total (49/45)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01

CGCGCATTATAAAGGAGCTCAGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCATTATTTATCCTTCACACGTTTGATTTCAATGTC  >  CP006881/2631260‑2631529
                                                                                                                                       |                                                                                                                                      
cgcgCATTATAAAGGAGCTCAGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACt                                                                                                                                     >  8:412615/1‑139 (MQ=255)
  cgcATTATAAAGGAGCTCAGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACACCGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGAc                                                                                                                                      >  3:23596/1‑136 (MQ=255)
     aTTATAAAGGAGCTCAGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTg                                                                                                                                    >  4:361071/1‑135 (MQ=255)
              gAGCTCAGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGa                                                                                                                          <  3:50470/136‑1 (MQ=255)
              gAGCTCAGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATc                                                                                                                       <  2:88929/139‑1 (MQ=255)
              gAGCTCAGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGGTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATc                                                                                                                       <  2:105565/139‑1 (MQ=255)
               aGCTCAGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCt                                                                                                                      >  1:201470/1‑139 (MQ=255)
               aGCTCAGGAATTAGCAAGAGGAATCGACTATAAATACCCTCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCt                                                                                                                      <  7:196444/139‑1 (MQ=255)
                 cTCAGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCTAAACAGACTGGAAAGTTCGAATCTGc                                                                                                                    >  5:294917/1‑139 (MQ=255)
                 cTCAGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACATACTGGAAAGTTCGAATCTGc                                                                                                                    >  5:353701/1‑139 (MQ=255)
                 cTCAGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGc                                                                                                                    >  7:304671/1‑139 (MQ=255)
                 cTCAGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGc                                                                                                                    >  6:22577/1‑139 (MQ=255)
                 cTCAGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGc                                                                                                                    >  5:427078/1‑139 (MQ=255)
                 cTCAGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGc                                                                                                                    >  5:131688/1‑139 (MQ=255)
                    aGGAATTGGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGc                                                                                                                    >  4:323532/1‑136 (MQ=255)
                    aGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACATACTGGAAAGTTCGAATCTGc                                                                                                                    >  4:294095/1‑136 (MQ=255)
                    aGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGc                                                                                                                    >  3:416435/1‑136 (MQ=255)
                    aGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGc                                                                                                                    >  4:36998/1‑136 (MQ=255)
                    aGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCt                                                                                                                  <  1:9042/138‑1 (MQ=255)
                        aTTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTa                                                                                                                <  4:407258/136‑1 (MQ=255)
                         ttAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTaa                                                                                                               <  4:123492/136‑1 (MQ=255)
                         ttAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGc                                                                                                            <  7:412615/139‑1 (MQ=255)
                          tAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTaa                                                                                                               <  4:416435/135‑1 (MQ=255)
                                gagGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGgt                                                                                                        <  5:270895/136‑1 (MQ=255)
                                gagGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGgt                                                                                                        >  6:270895/1‑136 (MQ=255)
                                 agGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTAc                                                                                                    >  7:114759/1‑139 (MQ=255)
                                        gACTATAAATAACCTCACAATTACGACATATGTTGTTTAGAACAAGAATTCCTACCTTATCATATTATAAATAAGAAATACTATAATCCGAAACAGACTTGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATaaa                                                                                              <  8:152785/138‑1 (MQ=255)
                                         aCTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACATACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATa                                                                                                >  4:97180/1‑135 (MQ=255)
                                            ataAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACATACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAAtt                                                                                            <  3:294095/136‑1 (MQ=255)
                                                    ccGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACATACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATgaaaaga                                                                                  >  8:111607/1‑138 (MQ=255)
                                                       cacaATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATgaaaagaaaa                                                                               >  1:322866/1‑138 (MQ=255)
                                                       cacaATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATgaaaagaaaa                                                                               >  7:357578/1‑138 (MQ=255)
                                                       cacaATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATgaaaagaaaa                                                                               >  7:423308/1‑138 (MQ=255)
                                                          aaTTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACATACTGGAAAGTTCg                                                                                                                           >  3:202712/1‑91 (MQ=255)
                                                          aaTTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACATACTGGAAAGTTCg                                                                                                                           <  4:202712/91‑1 (MQ=255)
                                                          aaTTACAACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATgaaaagaaaa                                                                               >  3:52272/1‑135 (MQ=255)
                                                            ttACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATaaaa                                                                          >  8:179148/1‑138 (MQ=255)
                                                              aCGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACaa                                                                       <  2:201470/139‑1 (MQ=255)
                                                                   aaCGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACATACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACaaaaaaa                                                                  <  7:111607/139‑1 (MQ=255)
                                                                   aaCGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACaaaaaaa                                                                  <  2:24112/139‑1 (MQ=255)
                                                                   aaCGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGGGTACGATAAATTAATGAAAAGAAAATAAAACaaaaaaa                                                                  <  8:304671/139‑1 (MQ=255)
                                                                   aaCGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAAAAAGCAATACTATAAGCCGAAACAGCCTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACaaaa                                                                     <  4:223699/136‑1 (MQ=255)
                                                                    aCGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACaaaaaaa                                                                  >  8:159598/1‑138 (MQ=255)
                                                                    aCGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACaaaaaaa                                                                  >  2:76221/1‑138 (MQ=255)
                                                                    aCGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACaaaaaaa                                                                  >  8:192999/1‑138 (MQ=255)
                                                                    aCGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACaaaa                                                                     >  4:192303/1‑135 (MQ=255)
                                                                      ggTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAg                                                               >  2:147060/1‑139 (MQ=255)
                                                                          gggTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCtt                                                           >  8:175746/1‑139 (MQ=255)
                                                                           gtgcGAACAACAATACCTCCAGGATCCACTGAAAAATAAGCAATACTATAACGCGAAACAGACTGGAAAGTTCGATTCTGCCTTAAAGCAGGTGTACGATAAAATAATGAACAGAAAATAAATCAAAATAACAGcc                                                             <  4:42827/133‑1 (MQ=255)
                                                                           ggTCGAACTACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCATGTGTACTATAAATTAATTAAAAGAAAATAAAACAAAAAAACAGCCTTg                                                          <  7:328042/139‑1 (MQ=255)
                                                                                 acaacaATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGatcatc                                                    <  8:357578/139‑1 (MQ=255)
                                                                                 acaacaATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGatcatc                                                    <  2:322866/139‑1 (MQ=255)
                                                                                 acaacaATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGatcatc                                                    <  6:427078/139‑1 (MQ=255)
                                                                                   aacaaTACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGatcat                                                     >  3:146984/1‑136 (MQ=255)
                                                                                     caaTACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGAtcatca                                                   <  3:36998/136‑1 (MQ=255)
                                                                                     caaTACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAgg                                                <  7:159598/139‑1 (MQ=255)
                                                                                             cccTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAg                                                                                                             >  1:396625/1‑70 (MQ=255)
                                                                                             cccTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAg                                                                                                             <  2:396625/70‑1 (MQ=255)
                                                                                             cccTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGtttt                                         >  7:59635/1‑138 (MQ=255)
                                                                                             cccTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGtttt                                         >  8:118041/1‑138 (MQ=255)
                                                                                                tGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGa                                                                                                                          <  3:177132/54‑1 (MQ=255)
                                                                                                tGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGa                                                                                                                          >  4:177132/1‑54 (MQ=255)
                                                                                                tGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATg                                     >  2:369113/1‑139 (MQ=255)
                                                                                                  aTCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTa                                       <  3:192303/135‑1 (MQ=255)
                                                                                                  aTCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTa                                       <  4:52272/135‑1 (MQ=255)
                                                                                                  aTCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATg                                     <  7:192999/137‑1 (MQ=255)
                                                                                                  aTCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATg                                     <  7:175746/137‑1 (MQ=255)
                                                                                                  aTCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGc                                    <  5:388686/138‑1 (MQ=255)
                                                                                                  aTCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATCAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTAt                                      <  3:323532/136‑1 (MQ=255)
                                                                                                  aTCCTCTGAAAAATAAGCAATACAATAAGCCGAAACATACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTa                                       <  3:411270/135‑1 (MQ=255)
                                                                                                     ctctGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCatta                                >  2:64956/1‑139 (MQ=255)
                                                                                                       ctGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGc                                    <  6:50289/133‑1 (MQ=255)
                                                                                                       ctGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGc                                    >  5:50289/1‑133 (MQ=255)
                                                                                                        tGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCattatt                              >  8:115992/1‑138 (MQ=255)
                                                                                                          aaaaaTAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCAttattta                            <  1:64956/138‑1 (MQ=255)
                                                                                                                  gCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCATTATTTATCCTTcaca                   <  1:147060/139‑1 (MQ=255)
                                                                                                                   cAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCATTATTTATCCTTCacac                  <  5:119814/139‑1 (MQ=255)
                                                                                                                     aTACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCATTATTTATCCTTCACACGt                <  6:294917/139‑1 (MQ=255)
                                                                                                                        cTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCATTATTTATCCTTCACACGttt              <  7:118041/138‑1 (MQ=255)
                                                                                                                           taAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCATTATTTATCCTTCACACGTTTGAtt          >  1:109734/1‑139 (MQ=255)
                                                                                                                             aGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCATTATTTATCCTTCACACGTTTGAttt         >  2:96664/1‑138 (MQ=255)
                                                                                                                             aGCCGAAACAGACTGGAAAGTTCGAATCCGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCATTATTTATCGTTCACACGTTTGAttt         >  6:372413/1‑138 (MQ=255)
                                                                                                                              gCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTa                                       <  3:291648/107‑1 (MQ=255)
                                                                                                                              gCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTa                                       >  4:291648/1‑107 (MQ=255)
                                                                                                                              gCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCAttattta                            >  2:145669/1‑118 (MQ=255)
                                                                                                                              gCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCAttattta                            <  1:145669/118‑1 (MQ=255)
                                                                                                                               ccGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCATTATTTATCCTTCACACGTTTGAttt         <  4:146984/136‑1 (MQ=255)
                                                                                                                                cGAAACATACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCATTATTTATCCTTCACACGtt               <  2:405869/129‑1 (MQ=255)
                                                                                                                                cGAAACATACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCATTATTTATCCTTCACACGtt               >  1:16371/1‑129 (MQ=255)
                                                                                                                                cGAAACATACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCATTATTTATCCTTCACACGtt               >  1:405869/1‑129 (MQ=255)
                                                                                                                                cGAAACATACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCATTATTTATCCTTCACACGtt               <  2:16371/129‑1 (MQ=255)
                                                                                                                                  aaaCAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCATTATTTATCCTTCACACGTTTGATTTCAATGt   >  2:232378/1‑139 (MQ=255)
                                                                                                                                   aaCAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCATTATTTATCCTTCACACGTTTGATTTCAATGTc  >  5:291564/1‑139 (MQ=255)
                                                                                                                                   aaCAGACTGGAAAGTTCGAATCTGCATTAAAGCATGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGACTTGATCATCAAGTCTGTTTTTATGAATTATTTATCCTTCACACTTTTGATTTCAAt     >  3:245378/1‑136 (MQ=255)
                                                                                                                                       |                                                                                                                                      
CGCGCATTATAAAGGAGCTCAGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCGAAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAAAACAAAAAAACAGCCTTGATCATCAAGGCTGTTTTTATGCATTATTTATCCTTCACACGTTTGATTTCAATGTC  >  CP006881/2631260‑2631529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A