Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A21 F59 I1 R1
|
23 |
54.9 |
2144786 |
90.8% |
1947465 |
141.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
454,891 |
G→T |
intergenic (+102/‑242) |
bolA → / → tig |
DNA‑binding transcriptional dual regulator BolA/trigger factor |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 454,891 | 0 | G | T | 100.0%
| 173.9
/ NA
| 57 | intergenic (+102/‑242) | bolA/tig | DNA‑binding transcriptional dual regulator BolA/trigger factor |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (29/28); total (29/28) |
GCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAAC > NC_000913/454751‑455028
|
gCCTCTCCTCCCGTTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTcc < 2:985161/143‑1 (MQ=255)
gtctcggcccTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCa < 2:339928/136‑1 (MQ=255)
ctcctcCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTCTGAGAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGc > 1:491330/1‑143 (MQ=255)
cctccGTGTCGTGGAGCAGGGAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAGACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCAt < 2:375669/143‑1 (MQ=255)
cccTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGCTTTTGCGCTTTTTTCGCAGCATTCa > 1:441295/1‑143 (MQ=255)
ccTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCAGGATTTTGCGCTTTTTTCCCAGCATTCAg > 1:682311/1‑143 (MQ=255)
ccTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTACAGTATGTTGCGAAAGATTGTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTGTCGGGATTTTGCGCTTTTTTCCCAGCGTTCAg > 1:515614/1‑143 (MQ=255)
cGTGGGGCAGGAGGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATCTTCTGAATATCGGCCTGTGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGaa < 2:227094/143‑1 (MQ=255)
ggCAGGAAGTGTCGCGTAAAACCGCATGTGCAGCTGTCGGCGCTTTGCCAGGATGTTGCTAAAGATTTTATGAAATACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTg < 2:496498/142‑1 (MQ=255)
gCAGGAAGCATCGCGTAAAAACGCATTTGCAAGTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAACACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGc < 2:847511/143‑1 (MQ=255)
gAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTGCCGGTCTGTTGCTCAAGATGTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCgg < 1:1060951/143‑1 (MQ=255)
gAAGCATCGCATAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCgg > 2:940672/1‑143 (MQ=255)
aTCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAAtt > 2:509234/1‑143 (MQ=255)
gcgTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATtgtg < 2:813941/143‑1 (MQ=255)
gTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGTTTTTGCGCTTTTTTCCCAGCATTTGGCTGAAAATTGAACGGGAAATGTGaa > 1:18718/1‑143 (MQ=255)
gTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGaa < 2:166441/143‑1 (MQ=255)
caCGCACTGGCAACTGGCGGCGCTGTCCAAGGATGTTGCTAAAGATTTTAGGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAAt < 2:192713/142‑1 (MQ=255)
gCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCAGTCCGACGACACTTGCCAGGGCATTGTGAAAAAATAcc > 2:466094/1‑142 (MQ=255)
gCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGAATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATAcg > 2:911395/1‑143 (MQ=255)
cATTTGCAACTGTCGGCGCTTTTCCAGTATGTTTCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATAcgc < 2:550486/143‑1 (MQ=255)
aCTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAgcgc < 1:940672/143‑1 (MQ=255)
cTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGACAAAATACGAGACAGCGCGCAATCACCg > 1:298351/1‑143 (MQ=255)
cAGTATGTTGCTAAAGATTTTATGAACAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCCATCACCGTTCACg > 2:1020741/1‑143 (MQ=255)
cAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCg > 2:911444/1‑143 (MQ=255)
ggTATGGTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGa < 1:388083/142‑1 (MQ=255)
cgTATGTTGCTAAATATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGa < 1:254406/142‑1 (MQ=255)
aGTATGTTGCTAAAGATTTTATGAAAACCGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGa < 1:573435/143‑1 (MQ=255)
aGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGa < 1:31418/143‑1 (MQ=255)
tATGTTGCTAAAGTTTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACt < 2:102184/143‑1 (MQ=255)
tGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCa < 1:83985/143‑1 (MQ=255)
gTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCAt < 2:583244/143‑1 (MQ=255)
ttGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCCGCATTCAGACGAAGCTTGCCCGGGAATTGTGAAACAATACGCGCCAGCGCGCTATAACCGTTCCCGAccccta > 2:514708/1‑138 (MQ=255)
cTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATaaga > 1:942968/1‑141 (MQ=255)
tAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTGCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATaataa > 1:680592/1‑140 (MQ=255)
tAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGGCTTATgaagg > 1:677979/1‑141 (MQ=255)
aaaGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCACTCACCGTTGTCGACTCATAAAAGt > 2:837029/1‑143 (MQ=255)
aaaGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTc > 2:988910/1‑135 (MQ=255)
aaaGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTc < 1:988910/135‑1 (MQ=255)
ttttATGAAAAACGGCCTGCTGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGc < 2:176058/143‑1 (MQ=255)
aacaaaaTGGCCCGCAGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCta > 2:40750/4‑143 (MQ=255)
gAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCAGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAGCCGTTCTCGACTCATAAAAGTGATGCCGCtat < 2:682311/143‑1 (MQ=255)
gAAAAACGGCCTGCGGGCCGTTTTGTCTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGCTGCCGCtat > 2:936729/1‑143 (MQ=255)
aaaaaCGTCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCTTTCAGACGAAAATTGCCCGGGTATTGTGAAAAAATACGCGACAGCGCGCAATACCCGTTCTCGACTCATAAAAGTGATGCCGCtatc > 2:458253/1‑142 (MQ=255)
aaaaaCGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAACCCGCGACATCGCGCATTAAGCCATAGACACTCAAAAAAGTGATGCCGGtata > 1:145434/1‑143 (MQ=255)
aaaaaCGGCCTGCGGGCCGGTTTGTTTTGTCTGGATTTTGCGCTTCTTTCCCCGCATTCAGACGAACAGTGCACGGGAATTGTGAAAAAACACGCCACAGCGGGCAATAACAAGTCCCGACTCCGACAAGAGAAGCCGccacc > 2:317218/1‑139 (MQ=255)
aCGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATG‑CGCTATAATGcc < 1:911444/143‑1 (MQ=255)
ctgCCTGCGGGTAGTTTTGTTTTGTCTGGATTTTGCTCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGAGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGcc < 1:572760/141‑1 (MQ=255)
cGGCCTGCGGGCCGTTTTGGTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGGCGGGGAATTGTGAAAAAATACGCGACAGCGCGCGATAACCGTGCTCGACTCATAAAGGTGATGCCGCTATAATGcc > 1:765487/1‑143 (MQ=255)
ggCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCcg < 1:245385/143‑1 (MQ=255)
gCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCcgc > 2:338072/1‑143 (MQ=255)
gggCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTa > 2:55503/1‑143 (MQ=255)
tttgttttgtCTGGATTGTGCGCTTTTTTCCCAGCATTCAGGCGAAAATTGCGCGGCAATTGTGCCAACAGAAGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAAt < 2:320432/143‑1 (MQ=255)
ttttgtCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTCTAATGCCGCGTCCTATTTGCCTGCtt > 1:858112/1‑143 (MQ=255)
ttttgtCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCtt > 1:1029571/1‑143 (MQ=255)
gtCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCgg < 2:241002/143‑1 (MQ=255)
tGGATTTTGCGCTTTTTTCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTACACTGCCGCGTCCTATTTGAATGCTTTggggtt > 2:213369/1‑141 (MQ=255)
gATTTTTTGCTTTTTTCCCAGAATGCAGAGGAAAATTGCACGGGAAGTGTGAAAAAATACGCGACAGCGCGCAAGAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgatga < 1:466094/143‑1 (MQ=255)
ttttttCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAAc > 1:318740/1‑143 (MQ=255)
ttttttCCAAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACAGCTCTCGACTCATAAAAGTGATGCCGCTATAATTCCGCGTCCTAGTTGAATGCTTTCGGGATGATTCTCGTAAc > 1:40361/1‑143 (MQ=255)
|
GCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACGAAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAAC > NC_000913/454751‑455028
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A