Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A29 F71 I1 R1
|
22 |
78.5 |
2942462 |
91.4% |
2689410 |
142.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,440,791 |
C→T |
intergenic (‑7/‑267) |
ydbK ← / → ydbJ |
putative pyruvate‑flavodoxin oxidoreductase/DUF333 domain‑containing protein YdbJ |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,440,791 | 0 | C | T | 98.8%
| 252.6
/ NA
| 85 | intergenic (‑7/‑267) | ydbK/ydbJ | putative pyruvate‑flavodoxin oxidoreductase/DUF333 domain‑containing protein YdbJ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (44/39); minor base G (1/0); total (46/39) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TAAGCCGTTTCCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATCAAACAGAG > NC_000913/1440653‑1440931
|
caaGCGGTTCCGGTCCCACGCATCAGGCTGTTCTGCCATCTTTCAACTGGGGGTAATACAGTAGAGCGCCATCACTTGACTGGTGCGAAATGCGACCGAAGCAACCGCGCCAGTACCGTCAATAGTAATCATATGACATCCtt < 2:964180/142‑1 (MQ=255)
caGCCGTTTCCGGCCCCTGCATCAGCCTGATCTGCCATCGTGGACCTGGGGGTAATAGGGTAGATAGCAATAATCCGACTTTCTCGCTATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCttg < 1:922306/142‑2 (MQ=255)
ccGTTTCCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACAt < 1:170540/143‑1 (MQ=255)
gTTTCCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCAGTACCGTCAATAGTAATCATATGACATCCTTACATTg > 1:967816/1‑143 (MQ=255)
tCCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTgcgc < 2:337571/143‑1 (MQ=255)
tCCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCAGATGACAACCTTACATTgcgc > 2:1067947/1‑143 (MQ=255)
ccGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCa > 1:221926/1‑143 (MQ=255)
ccGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCa > 1:1354124/1‑143 (MQ=255)
ggCGCAGGGATCAGCCTGTTCTGACATCGTGGAACGGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCaaa < 2:1171744/143‑1 (MQ=255)
ggCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCaag > 1:322359/1‑142 (MQ=255)
ggCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCaaa > 1:1337737/1‑143 (MQ=255)
ggccAGGCGGCGGCCGGTTCTGCCATCGTGGAACTGGGGGTAAGAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAAt < 2:553664/141‑1 (MQ=255)
gCCCAGGCATCAGCCTGCTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAAt < 2:822658/143‑1 (MQ=255)
acacAGGCGTCAGCTTGTTCTGCCATCGTAGAACTTGGTGTAATAGGGTAGATCGCGAGAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAAt < 2:420856/140‑1 (MQ=255)
cccAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATCACCGTCAACAGTAAACATATAACATCCCTACATTccgcgcctg > 2:764365/1‑138 (MQ=255)
ccAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGa < 1:246057/143‑1 (MQ=255)
cAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTAGCGCGAAATGCGACCGAAGCAACCGCGCACTTACCGTCACAAGTAATCCTATGACCTCCCTGCATTacgccacatga > 2:21802/1‑136 (MQ=255)
cATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTGCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAAGAGTAATCATATGACATCCTTACATTGCGCACGTGCGGGgc > 1:136661/1‑143 (MQ=255)
ccTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATAGCATCCTTACATTGCGCAAATGAGGGCAGCAcaa > 2:934201/1‑141 (MQ=255)
tGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGaaa > 1:516721/1‑143 (MQ=255)
tGTTCTGCCATCGGGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGGCCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGaaa < 1:1341543/143‑1 (MQ=255)
ttCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAAtt > 1:818926/1‑143 (MQ=255)
gCCACCGTGGACCTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATtgctg < 2:211522/143‑1 (MQ=255)
cATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATtgctgcc > 2:550771/1‑142 (MQ=255)
gTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGGAATTGCTGCGCGcc > 1:1037984/1‑143 (MQ=255)
gTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCAcc > 1:462804/1‑143 (MQ=255)
tGGAACTGGGGGTAATAGGGTAGATGGCGATCACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTTCCCGccc > 1:63686/1‑143 (MQ=255)
aaCTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAACGAGGGGCGCACGAAATTGCTGCGCGCCCagt > 1:421686/1‑143 (MQ=255)
aCTGGGGGTAATAGGTTCGATTGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGGACGAAATTGCTGCGCGCCCagta < 2:4408/143‑1 (MQ=255)
aCTGGGGGTAATAGGGTAGCTGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCagta < 1:904130/143‑1 (MQ=255)
tGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCACATGAGGGGCGCACGAAATTGCTGCGCGCCCagtagt > 1:633345/1‑143 (MQ=255)
ggggTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATtg > 1:30629/1‑125 (MQ=255)
ggggTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATtg < 2:30629/125‑1 (MQ=255)
gggTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAAt > 1:1147693/1‑143 (MQ=255)
aaTAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACAGCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCttt > 2:97314/1‑143 (MQ=255)
ggTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAAtt > 1:1092037/1‑143 (MQ=255)
tAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAAtttt < 2:915821/143‑1 (MQ=255)
aGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTa < 2:461416/143‑1 (MQ=255)
tGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCACTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCa < 1:847006/143‑1 (MQ=255)
gCGATAACTGCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCaaa < 1:810193/143‑1 (MQ=255)
cGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAACTTTAGCAAAt > 2:265196/1‑143 (MQ=255)
gATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATg > 1:356196/1‑143 (MQ=255)
tAACTTCACTGGTTCGAAATGCGACCGAAGCAACCGCGCCATGACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGc < 1:1405440/143‑1 (MQ=255)
aaCTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCACGAGTAATCGTTCAATTTTAGCAACTGGCt > 2:703624/1‑143 (MQ=255)
aCTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCCttcttc > 1:26356/1‑143 (MQ=255)
ctgggtcGAAATGCGACCCAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTtcttct < 1:118297/137‑1 (MQ=255)
cTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTtcttct < 2:633345/143‑1 (MQ=255)
cTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTtcttct < 2:413308/143‑1 (MQ=255)
tGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTttc > 2:565513/1‑138 (MQ=255)
tGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTttc < 1:565513/138‑1 (MQ=255)
cGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTCATCTTTCAATTTTAGCAAACGGCTTTCTTCTGCAttt > 1:979144/1‑143 (MQ=255)
cGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCAttt > 1:1117428/1‑143 (MQ=255)
taaTGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAGATGGCTTTCCTCTGCATTTTc > 2:1145324/2‑143 (MQ=255)
aTGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGc > 2:205222/1‑143 (MQ=255)
aTGCGACCGAAGCAACCGCGCCATGACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGc < 1:196961/143‑1 (MQ=255)
tGCGACCGAAGCAACCGCGCCATTACCGTCAAGAGTAATCATATGACATCCTGACATTGCGCAAATGAGGTGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCt < 2:282888/143‑1 (MQ=255)
ccGACCGAAGCACCCGCGCCAGTACCGCCACTAGTAATCATATCACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTCGCAAATGGCTTTCTTCTGCATTTTCGCtt < 1:258100/142‑1 (MQ=255)
gACCGAAGCCACCGCGCCATTACCGTCAATAGGAATCATATGACGTCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCtttt < 2:843599/143‑1 (MQ=255)
gACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCtttt < 1:657065/143‑1 (MQ=255)
gACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTCTCTTCTGCATTTTCGCtttt > 2:271756/1‑143 (MQ=255)
gACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCGTTCTCCTGCATTTTCGCtttt > 2:331420/1‑143 (MQ=255)
aCCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCGGCGCGCCCAGTAGTAATCTTTCAAGTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTtg < 1:351734/143‑1 (MQ=255)
ccGACGCCACCGTGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTATTCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTtgt < 2:419373/143‑1 (MQ=255)
ccGAAGCATCCGTGTCATTACCGTCAATAGTAATCATATGACATCCTTGCATTGCGCAAATGAGGGGCGCACGAAAGTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTtgt < 1:1377712/143‑1 (MQ=255)
ccGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATGTTTCAATTTTAGCAAATGGCTTTCTCCTGCATTTTCGCTTTtgt > 2:400453/1‑143 (MQ=255)
cgcgCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCCTTTTCGCTTTTGTGTCCGCcaca > 1:356982/1‑143 (MQ=255)
ttACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTTCCCCACATCAGCGt > 1:264839/1‑143 (MQ=255)
ttACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCga > 1:143770/1‑142 (MQ=255)
tACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTa > 2:516417/1‑143 (MQ=255)
tACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTa < 1:980226/143‑1 (MQ=255)
ccGTCAATAGTACTCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTaat < 2:178412/143‑1 (MQ=255)
tCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACCTCGTCGTcatgac > 1:652547/1‑142 (MQ=255)
tCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATAATCAGTCGACCAGTTAAGATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACACCACCGCaatgaa > 2:1429925/1‑143 (MQ=255)
tCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGAGCGCACGAAATTGCTGCGCGCCCAGTATTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTaatgaa > 2:971177/1‑143 (MQ=255)
tAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGtt > 1:1324392/1‑143 (MQ=255)
aGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGCCCCCCACCTCAGCGCAATGGATCttg > 1:155265/1‑142 (MQ=255)
gtgctCATATGACATCCTTACATTGCGCATATGAGGTGCGCACGAAATTGCTGCGCTCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGtttt < 2:1380353/139‑1 (MQ=255)
gTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGtttt > 1:980928/1‑143 (MQ=255)
tAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGACTGTTTTg > 1:706796/1‑143 (MQ=255)
cgtCATCTGGCATCCTTGCCTTGCGCTATTGTGGGTCTCACGAACTTGCTTCGCGCCCAGTAGTACAGATGATTTTTGCGCACATCGCGTTCTGTTGCATTTTCGCTGTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGa < 2:175299/141‑1 (MQ=255)
aaTCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGa < 1:98029/143‑1 (MQ=255)
aTCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGAt < 2:343662/143‑1 (MQ=255)
tCATATGACATGCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATc < 1:677668/143‑1 (MQ=255)
cATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATCa < 1:166762/143‑1 (MQ=255)
atatGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTGTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTTCCCCACTTCAGCGTAATGAATGTTTTTGTCaa > 1:1171416/1‑143 (MQ=255)
cacCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATCAAACagag < 1:1231077/143‑1 (MQ=255)
|
TAAGCCGTTTCCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATCAAACAGAG > NC_000913/1440653‑1440931
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
