Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F20 I1 R1 20 59.7 2309458 89.5% 2066964 142.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,159,147 C→G R220G (CGC→GGC)  oxyR → DNA‑binding transcriptional dual regulator OxyR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,159,1470CG100.0% 154.8 / NA 51R220G (CGC→GGC) oxyRDNA‑binding transcriptional dual regulator OxyR
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (27/24);  total (27/24)

CCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGC  >  NC_000913/4159008‑4159284
                                                                                                                                           |                                                                                                                                         
cccTTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCggcg                                                                                                                                        <  2:328704/143‑1 (MQ=255)
 ccGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCggcgc                                                                                                                                       >  1:960391/1‑143 (MQ=255)
  cgggggCGAACCGCGAAGGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCggcgcg                                                                                                                                      <  1:988444/140‑1 (MQ=255)
   gTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGa                                                                                                                                     >  1:929720/1‑143 (MQ=255)
          aaCCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCt                                                                                                                              <  2:98634/143‑1 (MQ=255)
               cgAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGaaa                                                                                                                         <  1:164014/143‑1 (MQ=255)
               cgAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCCATCAGGATATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGaaa                                                                                                                         <  1:162138/143‑1 (MQ=255)
                          cGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGCGCAGGCAATGGGTTTCTGTTTTGAAGCCGAGGCGGATGAAGATAGAAACTTGGGCGCGACCAGCCTGGAACATCTGAGCCAc                                                                                                              >  2:523232/1‑143 (MQ=255)
                          cGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGCAGCCGGGGCGGATGACGATACACACTTCGGCGCGACCAGCATGGAAACCATGCGCAAc                                                                                                              >  1:41585/1‑143 (MQ=255)
                           gATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTCTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTACGGCGCGACCAGCCTGGAAACTCTGCGCAACa                                                                                                             >  1:859817/1‑143 (MQ=255)
                              ggCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGTTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACAtgg                                                                                                          <  1:670433/143‑1 (MQ=255)
                                ccGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTGGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCAGCGCAACAtggtg                                                                                                        >  2:450335/1‑143 (MQ=255)
                                    tCTGGCCGGGGAAAAGCTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTggcgg                                                                                                    <  2:1094701/143‑1 (MQ=255)
                                    tCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTCTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGACGATACACATTGCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTggcgg                                                                                                    <  2:1059653/143‑1 (MQ=255)
                                      tgccAGGGGAAAACCTGCTGATGCTGAAAGACGACAACCGCTGTCCCGCTCAGCCAATGCGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCa                                                                                                  <  1:38724/140‑1 (MQ=255)
                                      gggCAGGGGAAGACCTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGACCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCa                                                                                                  <  1:98987/142‑1 (MQ=255)
                                        gCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAgg                                                                                                >  1:613023/1‑143 (MQ=255)
                                        gCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTCTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACGAGCGTGGCAACGCTGCGCAACGTCATGGCGGCAgg                                                                                                >  2:576175/1‑143 (MQ=255)
                                        gCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTATCTGTTTTGAAGCCGGGGCGGATGAAGATACGCACTTCGGCGCGACCAGCCTGGAAACTATGCGCCACAGGGTggcgcccgg                                                                                                >  2:430683/1‑138 (MQ=255)
                                          aGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAGGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGGGGCGGCAGGTa                                                                                              >  1:72084/1‑143 (MQ=255)
                                           ggggAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGGAg                                                                                             >  1:767084/1‑143 (MQ=255)
                                               aaaaaCTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCggg                                                                                         >  1:604146/1‑143 (MQ=255)
                                                   gttgctgATCTCGGAAGGTGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGTCGGATGAAGATACAGACTTCGGCGCGACCAGCCTGGAATCTCTGCGCAACATGGTGGCTGCAGGTAGCGGGATCa                                                                                     <  2:356014/141‑1 (MQ=255)
                                                   cctgctgATGCTGGATGACTCCCACTCTTTGCGCCATCAGGCAATGGGTTCCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCa                                                                                     <  1:84973/142‑1 (MQ=255)
                                                        tgATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTa                                                                                >  1:294207/1‑143 (MQ=255)
                                                           tGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACCTTACTg                                                                             <  1:1139415/143‑1 (MQ=255)
                                                            ggtGGAGGATGGGCACTGTTTGCGGGATCAGGCAATGGGTTTCTGTTGTGAGGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGc                                                                            <  2:73378/141‑1 (MQ=255)
                                                            gCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGc                                                                            >  1:961838/1‑143 (MQ=255)
                                                                gAAGAGGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAgc                                                                        <  1:175279/143‑1 (MQ=255)
                                                                      ggTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGACTGGAAACTCTGCGCAACATGGAGGCCGCAGGTAGGGGGTTCGCTTTACTGCCAGCgctggc                                                                  >  1:579861/1‑143 (MQ=255)
                                                                        tCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCgctggctg                                                                >  1:653237/1‑143 (MQ=255)
                                                                         cACTGTTGGCGCAATCAGGCAATGGCTTTCTGTTTTGAAGCCGGGGCGGATGGAGATACACACCTCGGCGCGAGCAGCCCGGAAACTCTTTGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCtgt                                                               <  1:105117/143‑1 (MQ=255)
                                                                              tttGCGCGATCAGGCAGTGGGTTTGTGTTGTGAAGCCGGGGCGGATGAAGATACACACGTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTgccgc                                                          <  2:1027483/143‑1 (MQ=255)
                                                                                  ggctctCAGGCCATGGTTTTCTCTTCTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGGCCAGCCTTGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGa                                                      <  2:859808/138‑1 (MQ=255)
                                                                                    cgATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAgc                                                    <  2:715635/143‑1 (MQ=255)
                                                                                         aGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGTAACGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCaaa                                               >  1:416230/1‑143 (MQ=255)
                                                                                            cAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGAGCAGGCTGGAAACTGTGCGCAACCTGGTGGCGGCAGGTGGCGGGATCACTTGACTGCCAGCGCTGGCTGTGCAGCCGGAGGGCATAcgc                                            >  2:799794/1‑143 (MQ=255)
                                                                                              aTGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGACACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTGACTGCCAGCGCTGGCTGTGCCGCCGGCGCGCACAcgcgg                                          >  2:373880/1‑142 (MQ=255)
                                                                                              aTGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGa                                          >  1:201667/1‑143 (MQ=255)
                                                                                               tGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGAt                                         <  1:15254/143‑1 (MQ=255)
                                                                                                gggTGTCTGTTGTGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATg                                        <  2:1096926/143‑1 (MQ=255)
                                                                                                  gTTTCTGTTTTGAAGCCGGGGCGGATGAAGCTACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGGGCGCACACGCGATggg                                      >  1:10504/1‑143 (MQ=255)
                                                                                                       tgtgTTCAAGCCGGCGTCGAGGAAGCTCCGCACTTCGGGGCCCCCAGCCTGGCCCCTCTGCGCCACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGgttgt                                 <  1:813473/143‑1 (MQ=255)
                                                                                                         ttttGAAGCCGGGGCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGttt                               >  1:544599/1‑143 (MQ=255)
                                                                                                             gAAGCCGGGGCGGATGAGCATGCGCACTTCGGCGCGGCCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCt                           <  2:847564/143‑1 (MQ=255)
                                                                                                                   ggggCGGAGGAAGACACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTg                     <  1:1092400/143‑1 (MQ=255)
                                                                                                                    gggCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGCAGCGCAAACGCGATGGGGTTGTGGAGCTGGCGTGc                    >  1:1646/1‑143 (MQ=255)
                                                                                                                      gCGGATGAAGATACACACTTCGGCGCGACCAGCCTGGAAACACTGCGAAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGGCGGAGCGCAAACGCCACAGGGCTGTGTATCGGCCGTGCag                  >  2:559391/1‑142 (MQ=255)
                                                                                                                          acaaaactACACACCTCGGCGCGACCAGCCGGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAg              <  1:1000134/136‑1 (MQ=255)
                                                                                                                          aTGAAGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCCGCGCCCCCCGTCCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAg              >  1:260860/1‑143 (MQ=255)
                                                                                                                            gAAGTTACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGcc            <  2:1031504/143‑1 (MQ=255)
                                                                                                                             aaGATACACACTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGAACACTTTACTGCCAGCGCTGGCCGTGCCGCCGGAGCGCAAACGCGACGGGGTTGCTTGGCCGCCGTGGATTAAGCCg           >  2:962885/1‑143 (MQ=255)
                                                                                                                                    acacTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCAc    >  1:1040084/1‑143 (MQ=255)
                                                                                                                                      acTTCGGCGCGACCAGCCTGGAAACTCTGCGCAACATGTTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCgcgc  >  2:1006903/1‑143 (MQ=255)
                                                                                                                                           |                                                                                                                                         
CCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGC  >  NC_000913/4159008‑4159284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A