Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F29 I0 R1
|
121 |
60.1 |
2565746 |
91.2% |
2339960 |
142.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,159,186 |
G→A |
38.6% |
A233T (GCA→ACA) |
oxyR → |
DNA‑binding transcriptional dual regulator OxyR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,159,186 | 0 | G | A | 38.6%
| 83.8
/ 114.7
| 130 | A233T (GCA→ACA) | oxyR | DNA‑binding transcriptional dual regulator OxyR |
| Reads supporting (aligned to +/- strand): ref base G (39/40); new base A (22/27); total (61/69) |
| Fisher's exact test for biased strand distribution p-value = 7.16e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 |
Only 100 of 135 total aligned reads displayed.
TGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAG > NC_000913/4159046‑4159328
|
tGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCa > 1:372714/1‑143 (MQ=255)
tGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACa < 1:1072997/143‑1 (MQ=255)
aaacAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGAATGCGCGATCAGGCAATGGGGTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACa < 1:1258538/140‑1 (MQ=255)
gCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGACACTCTGCGCAACATGGTGGCGGCAgg > 2:1193173/1‑143 (MQ=255)
gCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCTCAACGTGTTGGCGGCAgg > 1:35739/1‑143 (MQ=255)
aGGGGAAGAACTGCTGATGCTGGAAGATTGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGTa < 2:54230/143‑1 (MQ=255)
aGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGGGATGGGTGGCGGTTTTGTGGCACCCCCCCAGCAAGAGACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGtc > 1:938386/1‑142 (MQ=255)
ggggAACACTGCTGATGATGGAAGCTGGTCCGTTTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGc < 2:560558/143‑1 (MQ=255)
gcgaagaCTGCTGAGGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACCTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCg < 2:969890/137‑1 (MQ=255)
gAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCgg > 1:690802/1‑143 (MQ=255)
aCTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGACGATACACACTTCCGCGCGACCAGCCTGGAACCTCTGCGCCACATGGTGGCGGCAGGTAGAGGGATCa > 1:556952/1‑143 (MQ=255)
aCTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCa > 1:115395/1‑143 (MQ=255)
aCTGCTGATGCCGGAAGAGCGTCACTGTTTGCGCGATCGGGCAATGCGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCa < 2:860055/143‑1 (MQ=255)
gctgATGCGGGGAGATGGTCACTGTTTGCGCGCTCCGGCAATGGGTTTCGGTGTTGAAGCCGGGGCGGATGCAGATACACGCTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACtt < 2:750448/143‑1 (MQ=255)
cggttcTGGAAGATGGTCACTGTTTGCGCGAGCCGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTGCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTa < 2:464164/138‑1 (MQ=255)
aTGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACt < 1:1123060/143‑1 (MQ=255)
aTGCTGGAAGATGGTCACTGTTTGCGCGATCAGACACTGGGGTTTGGTTGTGAAGCCGGGGCGGATGAATATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACt < 2:77477/143‑1 (MQ=255)
gCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGc > 2:92126/1‑143 (MQ=255)
gCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGc < 1:819188/143‑1 (MQ=255)
tGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGGCCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCa > 1:1271667/1‑143 (MQ=255)
tGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGTAGCGGGCTCACTTGAcgggca > 1:579611/1‑138 (MQ=255)
ggAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTCGCGGGATCACTTTACTGCCAg > 2:620749/1‑143 (MQ=255)
ggAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGCTGGCGGCAGGTAGCGGGATCACTTTACTGCCAg > 2:964636/1‑143 (MQ=255)
ggAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGCTTCTGTTTTGAAGCCGGGGCGGATGAAGCTACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCACCATGGTGGCGGCAGGTCGCGGGATCACTTCACTGCAAg > 2:327818/1‑143 (MQ=255)
aGATGGTCACTGTTTGCGCGATCAGACAATGGAATTAACGCGTTTGGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAgcgc < 1:533345/143‑1 (MQ=255)
ggTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGCTGAAGATACACCCTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATCGTGACGGCAGGTAGCGGGATCACTTTACTGCCAGCgctggc > 1:623818/1‑143 (MQ=255)
cACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCtgt < 2:1019912/143‑1 (MQ=255)
gTTTGCTCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTgccg < 1:346945/143‑1 (MQ=255)
tGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGccgccg < 2:328846/143‑1 (MQ=255)
cgcgATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTAGTGCCAGCGCTGGATGTGCAGCCGGa > 2:1033492/1‑143 (MQ=255)
gcgATCAGGCAATGGGTTTCTGTTTGGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACGCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAg < 1:49969/143‑1 (MQ=255)
cgATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAgc < 1:1018145/143‑1 (MQ=255)
gATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACAGCCAGCGCTGGGTGTGCCGCCGGcgcg > 2:429024/1‑143 (MQ=255)
cAATGGGTTGCTGGTTTGAGGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCATCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAAcgc < 2:138117/143‑1 (MQ=255)
aTGGGTTTCTGTTTTGAAGCCGGGGCGGCTGAAGATACACACTTCCGCGCGACCAGCCTGGGAACTCAGCCGCACGTGGCGGCGACAGGTCGCTGGATCACTTTACTGCCACCGCTGGCTCTGCCGGCGGGCCGCCAACGCGa > 2:694052/1‑143 (MQ=255)
tttCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGCGCGCAAACGCGCTgggg > 2:77381/1‑143 (MQ=255)
tttCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCCAACGCGCTgggg > 2:350912/1‑143 (MQ=255)
tgtCTGTTTTGAAGCCGGGGCGGAGGGCGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATgggg < 2:1031539/141‑1 (MQ=255)
tCTGTTCTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGgtt < 1:855580/143‑1 (MQ=255)
ctactttGAAGACGGGGCGGATGAAGAGACACACGTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGgttg < 1:1128133/139‑1 (MQ=255)
cTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCAGCCGGAGCGGAAAAGCGATGGGgttg > 1:678973/1‑143 (MQ=255)
tGTTCTGCAGCCGGGGCGGATGAGGATACACACCTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGgttgt < 2:977291/143‑1 (MQ=255)
gggtgtGAAGCCGGGGCGGATGAAGATACACACGTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGgttgt < 2:37045/138‑1 (MQ=255)
gTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGgttgtt > 2:141989/1‑143 (MQ=255)
atgtgtaGCCTGGGTGGACGTAGATACACGCTTCCGCGTGACCAGCCTGTAAATTCTGCGCAATATGGTGGCGACAGGTAGCGGGATCACTTTATTGCCAGCGCTGGCTGTGTCGCCGGAGCGCAAACGCGATGGTGTTGttt < 2:74635/137‑1 (MQ=255)
ttGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTAt < 1:499290/143‑1 (MQ=255)
aGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGc < 1:1017173/143‑1 (MQ=255)
ccGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCCGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGGTGCTCATCTGCCg > 1:971853/1‑143 (MQ=255)
gggggCGGATGCAGAGACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGTCGCGGGATAACTTTACCGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTCTCTGCCGt < 1:810013/142‑1 (MQ=255)
cGGGGCGGAGGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGt < 1:908507/143‑1 (MQ=255)
ggCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCa < 1:225529/143‑1 (MQ=255)
gCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGTTAACTTTACTGCCAGCGCTGGCTGTGCTGCCGGAGCGCAGACGCGATGGGGTTGTTTATCTGCCGTGCAt > 1:216564/1‑143 (MQ=255)
gCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCACACGCGGCGGGGTTGTTTGTCGGCCGGGCAt > 1:215465/1‑143 (MQ=255)
gCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCAt > 1:900536/1‑143 (MQ=255)
cGGGTGAAGAGACAGACTGCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCAtt < 1:1256811/143‑1 (MQ=255)
cGGAGGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGGGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCAtt < 2:1156993/143‑1 (MQ=255)
gATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCACACGCGATGGGGCTGTTTATCTGCCGTGCCTTaa > 2:284650/1‑143 (MQ=255)
gAAGAGACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGcc < 1:320392/143‑1 (MQ=255)
aGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTCTCCGCCGTGCATTAAGCCgg > 2:938329/1‑143 (MQ=255)
aGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCgg > 2:1192392/1‑143 (MQ=255)
aGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACAGGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCgg < 2:579350/143‑1 (MQ=255)
acacacTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTCAGGCGGAAcc > 1:528218/1‑143 (MQ=255)
acacacTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGGAGGTTATCTGGCGGGCATTGAGCCGGaagc > 2:698682/1‑141 (MQ=255)
cacacTTCCGCTCGACCAGCTTGGAGACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTGACGGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCa < 2:316484/143‑1 (MQ=255)
tcTTCCGGGCGACCAGCCTGGAGACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCAcgc < 2:1082791/142‑1 (MQ=255)
acTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCAcgc > 2:565238/1‑143 (MQ=255)
ttCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGGTTATCTGCCGTGGACTAACCCGGCAACAcgccg > 2:818880/1‑143 (MQ=255)
cgcgcgACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCCGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGAGTTGTTTATCTGCCGTGCATTAAGCCGGAACGACGCCGCAc > 2:745449/1‑143 (MQ=255)
gACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTg > 2:471719/1‑143 (MQ=255)
ccAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGGGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGc < 2:1152414/143‑1 (MQ=255)
gCCTGGACACTCTGCGCAACCTGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTg < 2:539093/143‑1 (MQ=255)
gCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCCAACGCGACGGGCCTGTTTAGCTGCCGCGCATTAAGCCGGAACCACGCCGCACTACTCGccgg > 2:505081/1‑141 (MQ=255)
ccTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTACGCCGGAACCACGCCGCACTATTGGCCTgg > 1:499446/1‑143 (MQ=255)
ccTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATCAAGCCGGAACCACGCCGCACTATTGGCCTgg > 2:198219/1‑143 (MQ=255)
tGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGtt < 2:450607/143‑1 (MQ=255)
tGGAAACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGGCGCACTATTGGCCTGGtt > 2:488746/1‑143 (MQ=255)
ggAAACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGttt > 1:606692/1‑143 (MQ=255)
gAAACTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTCAGCCGGGACCACGCCGCACTATCGGCCTGGtttg > 1:1028916/1‑142 (MQ=255)
taaCGCTGCGCAACAGGGCGGCGCCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTAt < 1:465800/142‑1 (MQ=255)
acctccGCGCACCATGGTGCCGGCAGGTGGCGGGCTCACTCTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATc < 1:1322/141‑1 (MQ=255)
accctGCGCAACATGGTGGCGCCAGGTGGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGTGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCg < 2:85177/140‑1 (MQ=255)
aCTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGCAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAGCCCCGCCCCGCTCTTGGCCTGGTTGAtgc > 1:525122/1‑141 (MQ=255)
aCTCTGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTCTCTGCCGTGCATTAAGCCGGAACCACGCCGCCCTATTGGCCTGGTTTATCg > 1:1212978/1‑143 (MQ=255)
tctGCCCAACATGGTGGCCGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTc < 1:153825/143‑1 (MQ=255)
ctGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTCTTGGCCTGGTTTATccccc > 2:596577/1‑139 (MQ=255)
ctGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTcc > 1:1176745/1‑143 (MQ=255)
ctGCGCAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTcc < 1:463491/143‑1 (MQ=255)
tgggcgaCATGGTGGCGGCAGGGATCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCt < 2:19616/137‑1 (MQ=255)
tGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTccc > 2:210459/1‑142 (MQ=255)
cgcACCATGGTCGCGACAGGTAGGGGGATCACTGTACTGCCAGCGCTGGCTGTGCCGGCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGACGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTgg < 2:692446/143‑1 (MQ=255)
cgcAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTgg < 1:1170158/143‑1 (MQ=255)
gcAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGACCCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGc > 1:548982/1‑143 (MQ=255)
gcAACAGGGTGGGGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGc < 2:531653/143‑1 (MQ=255)
cAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCt > 1:843466/1‑143 (MQ=255)
cAACATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCt < 1:425810/143‑1 (MQ=255)
aaCATGGTGGCGACAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGACGGCGCGCACACGCGATGGGGTTGTTTATCTGCAGTGCATGAAGCCGGAATCACGCAGGACATGTGGGGTGGTTTAGCCTCCTGGCTc > 2:1175363/1‑143 (MQ=255)
ggtggGGGCAGGTAGCGGGATCGCTTGACGGCCAGCGCTGGGTGTGCGGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGc < 1:327818/143‑1 (MQ=255)
ggtggCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGc < 1:964636/143‑1 (MQ=255)
gtggCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCt < 1:617135/143‑1 (MQ=255)
ccagcAGGTAGCGGGATCGCTGTACTGCCAGCGCTGGCTGTGCCGCCGGATCGCAGACTCGATGTGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTgcg < 2:887564/140‑1 (MQ=255)
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TGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGGCTGTGCCGCCGGAGCGCAAACGCGATGGGGTTGTTTATCTGCCGTGCATTAAGCCGGAACCACGCCGCACTATTGGCCTGGTTTATCGTCCTGGCTCACCGCTGCGCAG > NC_000913/4159046‑4159328
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
