mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 9,907 | A→C | 11.4% | intergenic (+14/+21) | mog → / ← satP | molybdopterin adenylyltransferase/acetate/succinate:H(+) symporter |
| RA | 9,908 | G→T | 10.0% | intergenic (+15/+20) | mog → / ← satP | molybdopterin adenylyltransferase/acetate/succinate:H(+) symporter |
| RA | 83,587 | A→C | 9.5% | intergenic (‑58/+35) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 83,590 | G→T | 9.3% | intergenic (‑61/+32) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 123,050 | A→T | 86.9% | I12F (ATC→TTC) | aceE → | pyruvate dehydrogenase E1 component |
| RA | 125,085 | 2 bp→CA | 100% | coding (2069‑2070/2664 nt) | aceE → | pyruvate dehydrogenase E1 component |
| RA | 151,519 | A→C | 7.2% | I27M (ATT→ATG) | yadK ← | putative fimbrial protein YadK |
| RA | 151,522 | G→T | 7.2% | A26A (GCC→GCA) | yadK ← | putative fimbrial protein YadK |
| MC JC | 257,908 | Δ776 bp | 100% | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 282,513 | T→C | 7.1% | L79P (CTG→CCG) | yagE → | CP4‑6 prophage; putative 2‑keto‑3‑deoxygluconate aldolase |
| RA | 282,518 | G→A | 7.1% | G81S (GGC→AGC) | yagE → | CP4‑6 prophage; putative 2‑keto‑3‑deoxygluconate aldolase |
| JC JC | 568,268 | IS1 (–) +9 bp | 100% | intergenic (+21/‑39) | renD → / → emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| RA | 569,160 | G→T | 8.8% | D87Y (GAC→TAC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 569,161 | A→C | 9.5% | D87A (GAC→GCC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 669,380 | C→T | 5.8% | G176G (GGG→GGA) | cobC ← | putative adenosylcobalamin phosphatase/alpha‑ribazole phosphatase |
| RA | 699,556 | C→T | 14.8% | intergenic (‑379/+18) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 770,679 | G→T | 11.0% | intergenic (+68/‑779) | mngB → / → cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I |
| RA | 770,682 | A→C | 10.9% | intergenic (+71/‑776) | mngB → / → cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I |
| RA | 1,159,335 | G→T | 8.4% | intergenic (+33/+27) | ptsG → / ← fhuE | glucose‑specific PTS enzyme IIBC component/ferric coprogen/ferric rhodotorulic acid outer membrane transporter |
| RA | 1,159,336 | A→C | 8.5% | intergenic (+34/+26) | ptsG → / ← fhuE | glucose‑specific PTS enzyme IIBC component/ferric coprogen/ferric rhodotorulic acid outer membrane transporter |
| RA | 1,182,771 | G→C | 9.2% | A20G (GCC→GGC) | potD ← | spermidine preferential ABC transporter periplasmic binding protein |
| RA | 1,196,220 | C→T | 100% | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | 100% | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,211,612 | A→T | 6.0% | intergenic (+35/+68) | icdC → / ← iraM | protein IcdC/anti‑adaptor protein IraM, inhibitor of sigma(S) proteolysis |
| JC JC | 1,293,032 | IS1 (–) +8 bp | 100% | intergenic (‑110/‑488) | hns ← / → tdk | DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | insH21 | insH21 | |
| RA | 1,322,394 | C→G | 10.4% | D185H (GAC→CAC) | trpE ← | anthranilate synthase subunit TrpE |
| RA | 1,322,396 | A→T | 11.9% | I184N (ATT→AAT) | trpE ← | anthranilate synthase subunit TrpE |
| RA | 1,388,284 | A→T | 10.7% | intergenic (+23/+21) | tyrR → / ← tpx | DNA‑binding transcriptional dual regulator TyrR/lipid hydroperoxide peroxidase |
| RA | 1,388,285 | A→G | 12.6% | intergenic (+24/+20) | tyrR → / ← tpx | DNA‑binding transcriptional dual regulator TyrR/lipid hydroperoxide peroxidase |
| RA | 1,466,345 | T→C | 5.7% | pseudogene (954/2518 nt) | ydbA → | putative outer membrane protein, N‑terminal fragment |
| RA | 1,570,651 | A→G | 8.5% | H465H (CAT→CAC) | gadB ← | glutamate decarboxylase B |
| RA | 1,570,669 | T→C | 8.8% | Q459Q (CAA→CAG) | gadB ← | glutamate decarboxylase B |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA‑5 ← / → uspC | IS1 protein InsA/universal stress protein C |
| RA | 1,992,083 | G→C | 6.3% | noncoding (35/76 nt) | glyW ← | tRNA‑Gly |
| RA | 2,005,037 | C→T | 6.3% | T389I (ACC→ATC) | fliD → | flagellar filament capping protein |
| RA | 2,081,688 | A→T | 7.7% | I287N (ATT→AAT) | dacD ← | D‑alanyl‑D‑alanine carboxypeptidase DacD |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative colanic acid biosynthesis glycosyl transferase |
| RA | 2,172,350 | A→T | 7.3% | L175Q (CTG→CAG) | gatD ← | galactitol‑1‑phosphate 5‑dehydrogenase |
| RA | 2,172,353 | A→T | 7.3% | L174Q (CTG→CAG) | gatD ← | galactitol‑1‑phosphate 5‑dehydrogenase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (917‑918/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,364,995 | T→G | 8.2% | intergenic (+16/+23) | nudI → / ← ais | pyrimidine deoxynucleotide diphosphatase NudI/putative lipopolysaccharide core heptose(II)‑phosphate phosphatase |
| RA | 2,596,873 | Δ1 bp | 6.4% | intergenic (‑136/+32) | ypfJ ← / ← purC | uncharacterized protein YpfJ/phosphoribosylaminoimidazole‑succinocarboxamide synthase |
| RA | 2,596,878:1 | +G | 6.5% | intergenic (‑141/+27) | ypfJ ← / ← purC | uncharacterized protein YpfJ/phosphoribosylaminoimidazole‑succinocarboxamide synthase |
| RA | 2,638,584 | A→T | 13.6% | F23L (TTT→TTA) | bamB ← | outer membrane protein assembly factor BamB |
| RA | 2,672,639 | A→C | 8.4% | Q198P (CAG→CCG) | hcaD → | putative 3‑phenylpropionate/cinnamate dioxygenase ferredoxin reductase subunit |
| RA | 2,704,304 | A→G | 8.4% | intergenic (‑241/+31) | rnc ← / ← lepB | RNase III/signal peptidase I |
| RA | 2,704,306 | A→T | 9.4% | intergenic (‑243/+29) | rnc ← / ← lepB | RNase III/signal peptidase I |
| RA | 2,704,308 | C→T | 9.4% | intergenic (‑245/+27) | rnc ← / ← lepB | RNase III/signal peptidase I |
| RA | 2,766,917 | A→G | 6.5% | I334V (ATT→GTT) | rnlA → | CP4‑57 prophage; RNase LS, toxin of the RnlAB toxin‑antitoxin system |
| RA | 2,800,519 | T→G | 7.2% | intergenic (+44/‑204) | ygaM → / → nrdH | DUF883 domain‑containing protein YgaM/glutaredoxin‑like protein |
| RA | 2,801,056 | A→T | 8.7% | N31I (AAT→ATT) | nrdI → | dimanganese‑tyrosyl radical cofactor maintenance flavodoxin NrdI |
| RA | 2,906,608 | G→C | 7.6% | intergenic (+25/+35) | ygcG → / ← eno | protein YgcG/enolase |
| RA | 3,012,938 | T→A | 5.5% | R434R (CGA→CGT) | yqeB ← | XdhC‑CoxI family protein YqeB |
| RA | 3,041,398 | T→G | 100% | L29R (CTT→CGT) | ygfZ → | folate‑binding protein |
| RA | 3,139,632 | A→G | 7.2% | intergenic (+39/+84) | yghU → / ← hybG | disulfide reductase/organic hydroperoxide reductase/hydrogenase 2 accessory protein |
| RA | 3,139,633 | A→C | 7.3% | intergenic (+40/+83) | yghU → / ← hybG | disulfide reductase/organic hydroperoxide reductase/hydrogenase 2 accessory protein |
| RA | 3,139,639 | T→G | 8.8% | intergenic (+46/+77) | yghU → / ← hybG | disulfide reductase/organic hydroperoxide reductase/hydrogenase 2 accessory protein |
| RA | 3,139,640 | C→A | 9.0% | intergenic (+47/+76) | yghU → / ← hybG | disulfide reductase/organic hydroperoxide reductase/hydrogenase 2 accessory protein |
| RA | 3,139,646 | G→T | 9.1% | intergenic (+53/+70) | yghU → / ← hybG | disulfide reductase/organic hydroperoxide reductase/hydrogenase 2 accessory protein |
| RA | 3,139,647 | C→T | 7.6% | intergenic (+54/+69) | yghU → / ← hybG | disulfide reductase/organic hydroperoxide reductase/hydrogenase 2 accessory protein |
| RA | 3,180,505 | G→T | 6.4% | E29* (GAG→TAG) ‡ | ygiC → | putative enzyme with ATPase activity |
| RA | 3,180,506 | A→C | 7.1% | E29A (GAG→GCG) ‡ | ygiC → | putative enzyme with ATPase activity |
| RA | 3,270,143 | C→T | 11.5% | intergenic (+541/+73) | yhaC → / ← rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component |
| RA | 3,350,678 | Δ1 bp | 6.9% | noncoding (102/121 nt) | arcZ → | small regulatory RNA ArcZ |
| RA | 3,350,682:1 | +A | 6.9% | noncoding (106/121 nt) | arcZ → | small regulatory RNA ArcZ |
| RA | 3,560,455:1 | +G | 100% | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,578,609 | T→G | 6.4% | I40L (ATT→CTT) | gntR ← | DNA‑binding transcriptional repressor GntR |
| RA | 3,578,610 | C→A | 6.2% | K39N (AAG→AAT) | gntR ← | DNA‑binding transcriptional repressor GntR |
| RA | 3,657,599 | T→A | 11.8% | intergenic (+32/+387) | hdeD → / ← arrS | acid‑resistance membrane protein/small regulatory RNA ArrS |
| RA | 3,657,601 | G→C | 11.9% | intergenic (+34/+385) | hdeD → / ← arrS | acid‑resistance membrane protein/small regulatory RNA ArrS |
| RA | 3,657,603 | T→A | 11.7% | intergenic (+36/+383) | hdeD → / ← arrS | acid‑resistance membrane protein/small regulatory RNA ArrS |
| RA | 3,740,791 | G→C | 7.3% | G363R (GGC→CGC) | avtA → | valine‑‑pyruvate aminotransferase |
| RA | 3,797,336 | C→A | 5.7% | S130* (TCA→TAA) | waaL → | O‑antigen ligase |
| RA | 3,798,234 | A→T | 5.7% | intergenic (+27/+5) | waaL → / ← waaU | O‑antigen ligase/putative ADP‑heptose:LPS heptosyltransferase 4 |
| RA | 3,798,235 | A→T | 5.8% | intergenic (+28/+4) | waaL → / ← waaU | O‑antigen ligase/putative ADP‑heptose:LPS heptosyltransferase 4 |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph] | [rph] | |
| RA | 3,839,567 | G→C | 5.2% | L143V (CTT→GTT) | nlpA ← | lipoprotein‑28 |
| RA | 3,839,568 | G→C | 5.8% | N142K (AAC→AAG) | nlpA ← | lipoprotein‑28 |
| RA | 3,917,406 | A→G | 12.5% | V287A (GTT→GCT) | atpG ← | ATP synthase F1 complex subunit gamma |
| RA | 3,918,291 | C→T | 5.4% | intergenic (‑26/+25) | atpG ← / ← atpA | ATP synthase F1 complex subunit gamma/ATP synthase F1 complex subunit alpha |
| RA | 3,918,296 | C→T | 5.7% | intergenic (‑31/+20) | atpG ← / ← atpA | ATP synthase F1 complex subunit gamma/ATP synthase F1 complex subunit alpha |
| RA | 3,918,299 | A→G | 5.3% | intergenic (‑34/+17) | atpG ← / ← atpA | ATP synthase F1 complex subunit gamma/ATP synthase F1 complex subunit alpha |
| RA | 3,918,304 | A→G | 6.0% | intergenic (‑39/+12) | atpG ← / ← atpA | ATP synthase F1 complex subunit gamma/ATP synthase F1 complex subunit alpha |
| RA | 3,938,255 | T→A | 5.3% | L10Q (CTG→CAG) | rbsR → | DNA‑binding transcriptional dual regulator RbsR |
| RA | 3,963,415 | A→C | 8.7% | L272R (CTG→CGG) ‡ | gpp ← | guanosine‑5'‑triphosphate,3'‑diphosphate phosphatase |
| RA | 3,963,416 | G→T | 8.9% | L272M (CTG→ATG) ‡ | gpp ← | guanosine‑5'‑triphosphate,3'‑diphosphate phosphatase |
| RA | 3,981,102 | T→A | 6.2% | V72V (GTT→GTA) | yifK → | putative transporter YifK |
| JC | 4,001,645 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | Ni(2(+))/Co(2(+))/Mg(2(+)) transporter |
| RA | 4,002,398 | T→C | 5.1% | intergenic (+22/+21) | corA → / ← yigF | Ni(2(+))/Co(2(+))/Mg(2(+)) transporter/DUF2628 domain‑containing protein YigF |
| RA | 4,002,402 | G→A | 5.7% | intergenic (+26/+17) | corA → / ← yigF | Ni(2(+))/Co(2(+))/Mg(2(+)) transporter/DUF2628 domain‑containing protein YigF |
| RA | 4,049,986 | G→T | 5.4% | noncoding (88/109 nt) | spf → | small regulatory RNA Spot 42 |
| RA | 4,049,989 | A→C | 5.3% | noncoding (91/109 nt) | spf → | small regulatory RNA Spot 42 |
| RA | 4,051,259 | G→T | 6.5% | noncoding (224/245 nt) | csrC → | small regulatory RNA CsrC |
| RA | 4,051,262 | A→C | 6.6% | noncoding (227/245 nt) | csrC → | small regulatory RNA CsrC |
| RA | 4,060,261 | G→T | 6.8% | intergenic (+31/‑186) | bipA → / → yihL | ribosome‑dependent GTPase, ribosome assembly factor/putative transcriptional regulator YihL |
| RA | 4,060,264 | A→C | 9.4% | intergenic (+34/‑183) | bipA → / → yihL | ribosome‑dependent GTPase, ribosome assembly factor/putative transcriptional regulator YihL |
| RA | 4,159,186 | G→A | 38.6% | A233T (GCA→ACA) | oxyR → | DNA‑binding transcriptional dual regulator OxyR |
| RA | 4,184,543 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase subunit beta |
| RA | 4,197,756 | T→A | 5.6% | L14Q (CTG→CAG) | hemE → | uroporphyrinogen decarboxylase |
| RA | 4,262,250 | G→C | 5.3% | G194G (GGG→GGC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,262,255 | G→C | 6.0% | S196T (AGC→ACC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,291,512 | G→A | 5.2% | M1M (GTG→ATG) †‡ | nrfE → | putative cytochrome c‑type biogenesis protein NrfE |
| RA | 4,291,513 | T→C | 5.3% | M1A (GTG→GCG) †‡ | nrfE → | putative cytochrome c‑type biogenesis protein NrfE |
| RA | 4,296,060 | C→T | 23.9% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,332,871 | A→C | 5.2% | S134R (AGT→AGG) | basS ← | sensory histidine kinase BasS |
| RA | 4,335,654 | T→A | 5.8% | intergenic (‑64/+40) | eptA ← / ← adiC | phosphoethanolamine transferase EptA/arginine:agmatine antiporter |
| RA | 4,335,655 | T→A | 5.9% | intergenic (‑65/+39) | eptA ← / ← adiC | phosphoethanolamine transferase EptA/arginine:agmatine antiporter |
| RA | 4,356,445 | A→T | 5.1% | intergenic (‑34/+25) | dtpC ← / ← cadA | dipeptide/tripeptide:H(+) symporter DtpC/lysine decarboxylase 1 |
| RA | 4,362,528 | G→A | 5.8% | intergenic (‑594/+23) | cadC ← / ← pheU | DNA‑binding transcriptional activator CadC/tRNA‑Phe |
| RA | 4,362,529 | T→C | 5.5% | intergenic (‑595/+22) | cadC ← / ← pheU | DNA‑binding transcriptional activator CadC/tRNA‑Phe |
| RA | 4,422,903 | T→C | 5.7% | C20R (TGC→CGC) | ulaE → | L‑ribulose‑5‑phosphate 3‑epimerase UlaE |
| RA | 4,426,592 | T→A | 5.8% | intergenic (+35/+36) | rplI → / ← yjfZ | 50S ribosomal subunit protein L9/protein YjfZ |
| RA | 4,439,845 | T→A | 5.9% | intergenic (+52/+27) | ytfK → / ← ytfL | DUF1107 domain‑containing protein YtfK/putative inner membrane protein |
| RA | 4,479,012 | A→T | 8.1% | intergenic (+123/+22) | rraB → / ← yjgM | ribonuclease E inhibitor protein B/putative acetyltransferase YjgM |
| RA | 4,479,016 | G→C | 7.5% | intergenic (+127/+18) | rraB → / ← yjgM | ribonuclease E inhibitor protein B/putative acetyltransferase YjgM |
| RA | 4,479,020 | A→T | 7.1% | intergenic (+131/+14) | rraB → / ← yjgM | ribonuclease E inhibitor protein B/putative acetyltransferase YjgM |
| RA | 4,509,477 | C→T | 10.3% | pseudogene (469/471 nt) | insO → | KpLE2 phage‑like element; IS911B regulator fragment |
| RA | 4,581,138 | C→T | 6.5% | G109S (GGT→AGT) | hsdS ← | type I restriction enzyme EcoKI specificity protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196240 | 1211461 | 15222 | 27 [26] | [26] 27 | [icd]–[icdC] | [icd],ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,[icdC] |
| * | * | ÷ | NC_000913 | 3621173–3622313 | 3653139–3652031 | 29719–31967 | 27 [25] | [25] 27 | [rhsB]–[insH‑11] | [rhsB],yhhH,yhhI,yhhJ,rbbA,yhiI,yhiJ,yhiL,yhiM,yhiN,pitA,uspB,uspA,dtpB,rsmJ,prlC,rlmJ,gor,dinQ,agrA,agrB,arsR,arsB,arsC,yhiS,[insH‑11] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 206455 | 53 (0.800) | 3 (0.050) | 3/256 | NT | 5.5% | coding (1330/3483 nt) | dnaE | DNA polymerase III subunit alpha |
| ? | NC_000913 | = 206463 | 52 (0.810) | coding (1338/3483 nt) | dnaE | DNA polymerase III subunit alpha | |||||
| * | ? | NC_000913 | 226704 = | NA (NA) | 3 (0.050) | 3/256 | NT | NA | noncoding (946/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | NC_000913 | 226730 = | NA (NA) | noncoding (972/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | 546199 = | 41 (0.620) | 3 (0.050) | 3/258 | NT | 7.1% | coding (165/1050 nt) | allD | ureidoglycolate dehydrogenase |
| ? | NC_000913 | 546229 = | 38 (0.590) | coding (135/1050 nt) | allD | ureidoglycolate dehydrogenase | |||||
| * | ? | NC_000913 | = 1543036 | 56 (0.840) | 3 (0.050) | 3/250 | NT | 5.1% | coding (1025/1389 nt) | narU | nitrate/nitrite transporter NarU |
| ? | NC_000913 | = 1543045 | 59 (0.940) | coding (1016/1389 nt) | narU | nitrate/nitrite transporter NarU | |||||
| * | ? | NC_000913 | 1570641 = | 59 (0.890) | 5 (0.080) +ATAACGTTGTAAA |
3/238 | NT | 8.1% | intergenic (‑152/+4) | gadC/gadB | L‑glutamate:4‑aminobutyrate antiporter/glutamate decarboxylase B |
| ? | NC_000913 | 3666120 = | 67 (1.010) | intergenic (‑310/+60) | gadX/gadA | DNA‑binding transcriptional dual regulator GadX/glutamate decarboxylase A | |||||
| * | ? | NC_000913 | = 2235628 | 35 (0.530) | 4 (0.060) | 3/252 | NT | 9.8% | coding (364/1236 nt) | preA | NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA |
| ? | NC_000913 | = 2235642 | 40 (0.630) | coding (378/1236 nt) | preA | NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA | |||||
| * | ? | NC_000913 | = 2430980 | NA (NA) | 4 (0.060) | 3/250 | NT | NA | noncoding (34/36 nt) | other | REP169b |
| ? | NC_000913 | = 2431012 | NA (NA) | noncoding (2/36 nt) | other | REP169b | |||||
| * | ? | NC_000913 | 2520613 = | 55 (0.830) | 3 (0.050) | 3/252 | NT | 5.4% | coding (60/1416 nt) | gltX | glutamate‑‑tRNA ligase |
| ? | NC_000913 | 2520653 = | 52 (0.820) | coding (20/1416 nt) | gltX | glutamate‑‑tRNA ligase | |||||
| * | ? | NC_000913 | 2571622 = | 55 (0.830) | 3 (0.050) | 3/258 | NT | 5.5% | coding (130/1404 nt) | eutE | putative aldehyde dehydrogenase, ethanolamine utilization protein |
| ? | NC_000913 | 2571646 = | 50 (0.770) | coding (106/1404 nt) | eutE | putative aldehyde dehydrogenase, ethanolamine utilization protein | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 5 (0.080) | 4/252 | NT | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA/23S ribosomal RNA |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA/23S ribosomal RNA | |||||
| * | ? | NC_000913 | 2727891 = | NA (NA) | 9 (0.140) | 7/252 | NT | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA |
| ? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | 2729475 = | 33 (0.500) | 4 (0.070) | 4/244 | NT | 9.4% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA |
| ? | NC_000913 | = 4168363 | 47 (0.770) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2835068 = | NA (NA) | 3 (0.050) | 3/250 | NT | NA | noncoding (1/36 nt) | other | REP195a |
| ? | NC_000913 | 2835098 = | NA (NA) | noncoding (31/36 nt) | other | REP195a | |||||
| * | ? | NC_000913 | = 3089696 | 62 (0.930) | 5 (0.080) | 5/246 | NT | 7.5% | intergenic (+18/‑59) | galP/yggI | galactose:H(+) symporter/conserved protein YggI |
| ? | NC_000913 | = 3089702 | 66 (1.070) | intergenic (+24/‑53) | galP/yggI | galactose:H(+) symporter/conserved protein YggI | |||||
| * | ? | NC_000913 | 3098507 = | NA (NA) | 3 (0.050) | 3/248 | NT | NA | noncoding (3/30 nt) | other | REPt217c |
| ? | NC_000913 | 3098531 = | NA (NA) | noncoding (27/30 nt) | other | REPt217c | |||||
| * | ? | NC_000913 | = 3350381 | 36 (0.540) | 3 (0.050) | 3/264 | NT | 7.7% | coding (79/654 nt) | elbB | low activity glyoxalase ElbB |
| ? | NC_000913 | 3365556 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 3423376 = | 49 (0.740) | 7 (0.110) | 6/260 | NT | 7.9% | intergenic (+182/+47) | yhdZ/rrfF | putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA |
| ? | NC_000913 | = 4213162 | 114 (1.740) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA/stress response protein | |||||
| * | ? | NC_000913 | 3657430 = | 45 (0.680) | 3 (0.050) | 3/256 | NT | 6.3% | coding (436/573 nt) | hdeD | acid‑resistance membrane protein |
| ? | NC_000913 | 3657468 = | 45 (0.700) | coding (474/573 nt) | hdeD | acid‑resistance membrane protein | |||||
| * | ? | NC_000913 | 3774236 = | NA (NA) | 4 (0.060) | 4/250 | NT | NA | intergenic (+42/‑188) | mtlA/mtlD | mannitol‑specific PTS enzyme IICBA component/mannitol‑1‑phosphate 5‑dehydrogenase |
| ? | NC_000913 | 3774261 = | NA (NA) | noncoding (25/29 nt) | other | REPv271a | |||||
| * | ? | NC_000913 | = 3886788 | NA (NA) | 6 (0.100) | 6/250 | NT | NA | noncoding (20/29 nt) | other | REPv281 |
| ? | NC_000913 | = 3886799 | NA (NA) | noncoding (9/29 nt) | other | REPv281 | |||||
| * | ? | NC_000913 | = 3943659 | NA (NA) | 3 (0.050) | 3/260 | NT | 27.6% | intergenic (+149/‑45) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA |
| ? | NC_000913 | = 4037518 | 8 (0.120) | intergenic (+183/‑1) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA | |||||
| * | ? | NC_000913 | 3984240 = | NA (NA) | 4 (0.060) | 3/250 | NT | NA | noncoding (20/34 nt) | other | REP287a |
| ? | NC_000913 | 3984302 = | NA (NA) | noncoding (23/36 nt) | other | REP287b | |||||
| * | ? | NC_000913 | = 4171625 | 72 (1.080) | 5 (0.080) | 4/252 | NT | 6.8% | intergenic (+81/‑12) | rrlB/rrfB | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | = 4213004 | NA (NA) | intergenic (+58/‑36) | rrlE/rrfE | 23S ribosomal RNA/5S ribosomal RNA | |||||
| * | ? | NC_000913 | 4295980 = | NA (NA) | 6 (0.100) | 5/250 | NT | NA | noncoding (32/37 nt) | other | REP321c |
| ? | NC_000913 | 4296062 = | NA (NA) | noncoding (1/37 nt) | other | REP321e | |||||
| * | ? | NC_000913 | 4296399 = | NA (NA) | 3 (0.050) | 3/250 | NT | NA | noncoding (1/37 nt) | other | REP321k |
| ? | NC_000913 | 4296430 = | NA (NA) | noncoding (32/37 nt) | other | REP321k | |||||
| * | ? | NC_000913 | 4332085 = | 127 (1.910) | 6 (0.100) | 5/244 | NT | 5.1% | intergenic (+81/‑31) | proP/pmrR | osmolyte:H(+) symporter ProP/putative bitopic inner membrane protein |
| ? | NC_000913 | 4332113 = | 108 (1.760) | intergenic (+109/‑3) | proP/pmrR | osmolyte:H(+) symporter ProP/putative bitopic inner membrane protein | |||||