Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F77 I0 R1
|
41 |
21.1 |
946138 |
88.6% |
838278 |
142.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,159,068 |
G→A |
30.8% |
M193I (ATG→ATA) |
oxyR → |
DNA‑binding transcriptional dual regulator OxyR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,159,068 | 0 | G | A | 30.8%
| 27.9
/ 15.1
| 29 | M193I (ATG→ATA) | oxyR | DNA‑binding transcriptional dual regulator OxyR |
| Reads supporting (aligned to +/- strand): ref base G (7/13); new base A (7/2); total (14/15) |
| Fisher's exact test for biased strand distribution p-value = 5.02e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.07e-01 |
GCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGC > NC_000913/4158928‑4159210
|
gcgcTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCt < 2:289940/143‑1 (MQ=255)
tttctaaGAATTCATTGAAGAGCAGGGGAATGAAGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACt < 1:42498/138‑1 (MQ=255)
cagtcattGGAGTGCCGGTGTTTGATGAGCCAATGTTGCTGGCTATCGATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATACTGGAAGATGGTCACTGTTTgcgc < 1:425880/140‑1 (MQ=255)
aaGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGACCGATCTGGCAGGGGAAAAACTGCTGATACTGGAAGATGGTCACTATTTGCGCGATCAGGCa > 1:14752/1‑143 (MQ=255)
tGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGTTCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGCTTGCGCGATCAGGCAATg > 2:353821/1‑143 (MQ=255)
cggggttCGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGTAAGATGGTTATTGTTTGCGCGATCAGGCAATGGGt < 1:90311/139‑1 (MQ=255)
cGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAGACTGCTGATACTGGAAGATGGTCACGATGAGCGCGGTCAGGCAATggga > 2:68663/1‑142 (MQ=255)
tttGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTg > 2:45605/1‑143 (MQ=255)
catgcGCAAAGGTGGCCGGGTATCTAGGAAGATCACCCGCGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATACTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGttt < 1:271955/142‑1 (MQ=255)
cgctcggTTGCCGGCTAGCTACGCAGATCACCCGTGGGCGCACCGCGAATGCGTACCGATGGCCGATCCCGCAGGGGAAACACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAg < 2:178513/137‑1 (MQ=255)
ccAATGTGGCGGGGTATCGATGAAGATCAGCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGc < 1:394092/143‑1 (MQ=255)
cTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGCTGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCggg > 1:115442/1‑142 (MQ=255)
gtcgatGAGGACCACCCGTGGCCGAACCGCGAAGGCGTACCGATGGCCGGTCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGa < 2:247796/139‑1 (MQ=255)
atctagGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGa < 1:317102/143‑1 (MQ=255)
atGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATACTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATaca > 1:42719/1‑143 (MQ=255)
gAATATCACGCGTGGGCGAACCGCGAATGCGTACCGATGGCCTTTCTGGCAGTGTAATTTTTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATacaca < 1:17761/143‑1 (MQ=255)
aaGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGCAAAACTGCTGATACTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATacacac > 2:107818/1‑143 (MQ=255)
aTCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATACTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTc > 1:394658/1‑143 (MQ=255)
tCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTcc > 2:260581/1‑143 (MQ=255)
gTGGGCGAAACGCGAATGCGTACCGATGGCCGATCTGGCAGCGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGa < 1:40302/143‑1 (MQ=255)
aaCCGCGAATGCTTACCGATGGCCGATCTGGCAGGGCAAAAACTGCTGATGCTGGAGGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCt < 2:212559/143‑1 (MQ=255)
aCCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGCAAAACTGCTGACGCTGGCAGATGGTCACTGTTTGCGCGCTCAGGCAACGGGCGTCTGTCTTCAAGCCGGCGCGGATGAAGACACCCACCTCCGCCCGACCCGCCTg > 2:77006/1‑143 (MQ=255)
cgAATGCGTACCGATGGGCGATCTGGCAGGGGAAACAATGCTGATGCGATAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGaaa < 2:457554/143‑1 (MQ=255)
cgAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGaaa < 1:45605/143‑1 (MQ=255)
cgAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGGCACTGTTTGCGCGATCAGGCAATGGGTATCTGTTTTGAAGCCGGTGCGGATGAAGATACACACTTCCGCACGACCAGCCGGGaaa > 2:29686/1‑143 (MQ=255)
ccGACGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGACGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCaa < 1:397406/143‑1 (MQ=255)
gATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCCGCGCTACAtgttgcc > 1:183313/1‑141 (MQ=255)
aGGGGAAAAACTGCTGATACTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTa > 1:331106/1‑143 (MQ=255)
aaaaaCTGCTGATACTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACGAGCCTGGAAACTATGCGCAACATGGTGGCGGCAAGTAGAggg > 2:125614/1‑143 (MQ=255)
gCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGAGCCCTTTACTGc > 1:242824/1‑143 (MQ=255)
|
GCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGC > NC_000913/4158928‑4159210
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
