Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F84 I1 R1 23 34.8 1446234 89.3% 1291486 142.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,158,922 Δ6 bp coding (433‑438/918 nt) oxyR → DNA‑binding transcriptional dual regulator OxyR

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4158922 4158927 6 36 [0] [0] 36 oxyR DNA‑binding transcriptional dual regulator OxyR

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 41589210 (0.000)36 (0.910) 32/284 0.2 100% coding (432/918 nt) oxyR DNA‑binding transcriptional dual regulator OxyR
?NC_000913 4158928 = 0 (0.000)coding (439/918 nt) oxyR DNA‑binding transcriptional dual regulator OxyR

GATK/CNVnator alignment

N/A