Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A21 F66 I1 R1 35 99.0 4347662 95.6% 4156364 127.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA BS168_reference_genome 2,097,087 (A)7→8 intergenic (‑111/+39) azoJ ← / ← yocK FMN‑dependent NADH‑azoreductase/putative general stress protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*BS168_reference_genome2,097,0801.A100.0% 262.1 / NA 72intergenic (‑104/+46)azoJ/yocKFMN‑dependent NADH‑azoreductase/putative general stress protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base A (36/36);  total (36/36)

ATTTTACAAATAAAACTGTAGACATTTGTATTCCTCCCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTC‑AAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTTTGTTGGATAAGTCTTTTAC  >  BS168_reference_genome/2096952‑2097212
                                                                                                                                 |                                                                                                                                    
aatttACAAATAAAACTGTAGACATTTGTATTCCTCCCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTC‑aaaaaaaag                                                                                                                             <  5:386778/136‑3 (MQ=255)
    tACAAATAAAACTGTAGACATTTGTATTCCTCCCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAg                                                                                                                          <  7:285169/138‑1 (MQ=255)
    tACAAATAAAACTGTAGACATTTGTATTCCTCCCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAg                                                                                                                          <  3:401750/138‑1 (MQ=255)
     aCAAATAAAACTGTAGACATTTGTATTCCTCCCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGt                                                                                                                         <  7:488977/138‑1 (MQ=255)
      cAAATAAAACTGTAGACATTTGTATTCCTCCCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTa                                                                                                                        <  5:137639/138‑1 (MQ=255)
         aTAAAACTGTAGACATTTGTATTCCTCCCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATc                                                                                                                    <  8:183913/139‑1 (MQ=255)
               cTGTATACATTTGTATTACTCCCGGTAATCTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAatat                                                                                                              <  7:338296/139‑1 (MQ=255)
               cTGTAGACATTTGTATTCCTCCCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAatat                                                                                                              <  7:101881/139‑1 (MQ=255)
               cTGTAGACAATTGTATTCCTCCCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAatat                                                                                                              <  7:530058/139‑1 (MQ=255)
               cTGTAGACAAATCTAATCCTCCCGGTAAACTTTTTATATTTACTTACAAATAGTATGGTACTTTCTTTTTTACGTACAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAaaat                                                                                                              <  6:345398/139‑1 (MQ=255)
                  tAGACATTTGTATTCCTCCCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAatat                                                                                                              <  1:299530/136‑1 (MQ=255)
                  tAGACATTTGTATTCCTCCCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAatat                                                                                                              >  2:299530/1‑136 (MQ=255)
                  tAGACATTTGTATTCCTCCCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCg                                                                                                            <  6:483832/138‑1 (MQ=255)
                          tGTATTCCTCCCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAGGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTActtg                                                                                                   >  3:392925/1‑139 (MQ=255)
                          tGTATTCCTCCCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTActtg                                                                                                   >  4:176977/1‑139 (MQ=255)
                              ttCCTCCCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTActtgctt                                                                                                <  8:418027/138‑1 (MQ=255)
                                 ctccCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCa                                                                                            >  5:529021/1‑139 (MQ=255)
                                 ctccCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCa                                                                                            >  5:281967/1‑139 (MQ=255)
                                 ctccCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCa                                                                                            >  7:43836/1‑139 (MQ=255)
                                 ctccCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCa                                                                                            >  1:319239/1‑139 (MQ=255)
                                   cccGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCAtt                                                                                          >  6:65965/1‑139 (MQ=255)
                                   cccGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCAtt                                                                                          >  6:369185/1‑139 (MQ=255)
                                     cGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCAtttt                                                                                        <  2:282349/139‑1 (MQ=255)
                                      ggTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCAtttt                                                                                        >  7:156192/1‑138 (MQ=255)
                                      ggTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCAtttt                                                                                        >  4:419643/1‑138 (MQ=255)
                                             tttttATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGa                                                                                <  8:156192/139‑1 (MQ=255)
                                                ttATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGa                                                                                >  6:127092/1‑136 (MQ=255)
                                                ttATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGa                                                                                <  5:127092/136‑1 (MQ=255)
                                                ttATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATc                                                                             >  7:60307/1‑139 (MQ=255)
                                                       tacttacAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGttaa                                                                      >  5:450172/1‑137 (MQ=255)
                                                       tacttacAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCa                                                                      >  7:37725/1‑139 (MQ=255)
                                                       tacttacAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGAACTTCCTTGGCATTTTTACTTCGAATCTTGTTCa                                                                      >  3:169442/1‑139 (MQ=255)
                                                        acttacAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCa                                                                      <  3:268716/138‑1 (MQ=255)
                                                        acttacAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCa                                                                      <  3:346939/138‑1 (MQ=255)
                                                          ttacAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGa                                                                   >  6:457455/1‑139 (MQ=255)
                                                                    tATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGAttt                                                         >  4:329590/1‑139 (MQ=255)
                                                                        ttACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATa                                                     >  1:224359/1‑139 (MQ=255)
                                                                           ctttctttTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGt                                                  >  3:61958/1‑139 (MQ=255)
                                                                            tttctttTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTc                                                 >  8:437978/1‑139 (MQ=255)
                                                                              tctttTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACTTCTg                                               >  6:163770/1‑139 (MQ=255)
                                                                              tctttTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTg                                               >  6:202612/1‑139 (MQ=255)
                                                                              tctttTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTACATACGTCTg                                               >  1:401088/1‑139 (MQ=255)
                                                                              tctttTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCATGGAATTATTACTTCGAATCTTGTTCACGATCCAAGATATCATACGTCTg                                               >  7:465772/1‑139 (MQ=255)
                                                                                ttttttACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTCCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTAATACGTCTGc                                              >  7:338263/1‑138 (MQ=255)
                                                                                  ttttACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAg                                           >  7:409755/1‑139 (MQ=255)
                                                                                       cGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCtttt                                      <  5:202612/139‑1 (MQ=255)
                                                                                                 aTCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATcc                                                                <  1:329725/103‑1 (MQ=255)
                                                                                                 aTCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATcc                                                                >  2:329725/1‑103 (MQ=255)
                                                                                                 aTCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATa                                                     <  3:518900/114‑1 (MQ=255)
                                                                                                 aTCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATa                                                     >  4:518900/1‑114 (MQ=255)
                                                                                                 aTCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAAtt                            >  2:25355/1‑139 (MQ=255)
                                                                                                 aTCACTTTATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAAtt                            >  8:155573/1‑139 (MQ=255)
                                                                                                        tATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATCCGTCTGCGAGCTTTTTTGATCAATTGTTTCtg                     >  8:117211/1‑138 (MQ=255)
                                                                                                        tATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCtt                     >  8:22825/1‑139 (MQ=255)
                                                                                                        tATTTTGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCtt                     >  3:408358/1‑139 (MQ=255)
                                                                                                          ttttGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTttg                   <  2:319239/139‑1 (MQ=255)
                                                                                                          ttttGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGGACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTttg                   <  8:528165/139‑1 (MQ=255)
                                                                                                            ttGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTttgtt                 >  1:207252/1‑139 (MQ=255)
                                                                                                            ttGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTttgt                  <  8:21613/138‑1 (MQ=255)
                                                                                                            ttGAATATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTttgt                  <  6:489261/138‑1 (MQ=255)
                                                                                                               aaTATGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTTTGTTGGa              >  3:485950/1‑139 (MQ=255)
                                                                                                                 tatGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTTTGTTGGATa            <  3:176977/139‑1 (MQ=255)
                                                                                                                 tatGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTTTGTTGGATa            <  2:224359/139‑1 (MQ=255)
                                                                                                                 tatGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTTTGTTGGATa            <  5:381709/139‑1 (MQ=255)
                                                                                                                 tatGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTTTGTTGGATa            <  3:419643/139‑1 (MQ=255)
                                                                                                                 tatGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTTTGTTGGATa            <  7:12624/139‑1 (MQ=255)
                                                                                                                 tatGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTTTGTTGGATa            <  4:408358/139‑1 (MQ=255)
                                                                                                                 tatGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTTTGTTGGATa            <  4:485950/139‑1 (MQ=255)
                                                                                                                 tatGAGATTTTTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTTTGTTGGATa            <  5:369185/139‑1 (MQ=255)
                                                                                                                 tatGAGATTATTTTTCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTTTGTTGGATa            <  7:142807/139‑1 (MQ=255)
                                                                                                                            ttttCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTTTGTTGGATAAGTCTTTTAc  <  8:232516/138‑1 (MQ=255)
                                                                                                                            ttttCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTTTGTTGGATAAGTCTTTTAc  <  8:37725/138‑1 (MQ=255)
                                                                                                                            ttttCAAAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTTTGTTGGATAAGTCTTTTAc  <  6:281967/138‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                    
ATTTTACAAATAAAACTGTAGACATTTGTATTCCTCCCGGTAAACTTTTTATATTTACTTACAAATAGTATGTTACTTTCTTTTTTACGTAAAGTCAATCACTTTATTTTGAATATGAGATTTTTTTTC‑AAAAAAAGCAAGTACATCTAATATCGGTGTACTTGCTTGGCATTTTTACTTCGAATCTTGTTCACGATCCAAGATTTCATACGTCTGCGAGCTTTTTTGATCAATTGTTTCTTTGTTGGATAAGTCTTTTAC  >  BS168_reference_genome/2096952‑2097212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A