Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F1 I2 R1
|
92 |
50.6 |
2362856 |
94.3% |
2228173 |
111.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,072,728 |
G→A |
G397D (GGT→GAT) |
flu → |
CP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,072,728 | 0 | G | A | 99.7%
| 1081.0
/ NA
| 300 | G397D (GGT→GAT) | flu | CP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (143/156); minor base T (0/1); total (143/157) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 300 total aligned reads displayed.
CTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATACGGCCACGGATACCACGGTAAATGGCGGACTGTT > NC_000913/2072592‑2072860
|
cTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATa > 2:754693/1‑139 (MQ=255)
cTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATa > 2:384628/1‑139 (MQ=255)
cTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATa > 2:20494/1‑139 (MQ=255)
gACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATAcc < 2:513754/139‑1 (MQ=255)
gACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATAcc < 2:310179/139‑1 (MQ=255)
ggACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGa > 2:782816/1‑139 (MQ=255)
cacacaGCCACTAATACCTGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCg < 2:793125/139‑1 (MQ=255)
tgCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGAGAAATGGCGGTGTACTGCTGGCCGATTCCGGGGCCGCTGTCAGTGATACCCGGAGCGACGGa < 1:1134496/138‑1 (MQ=255)
aGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGa < 1:836735/139‑1 (MQ=255)
gCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGaa < 1:1017280/139‑1 (MQ=255)
gCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGaa < 2:1047586/139‑1 (MQ=255)
gCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGaa < 1:782816/139‑1 (MQ=255)
cACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCAACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAg < 1:696641/139‑1 (MQ=255)
tAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCa < 2:349678/139‑1 (MQ=255)
tAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCa < 1:1151780/139‑1 (MQ=255)
aTACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCAtt > 2:665028/1‑139 (MQ=255)
tACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTc < 1:384470/139‑1 (MQ=255)
gcgTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTc < 2:917361/134‑1 (MQ=255)
gcgTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTAt > 1:159022/1‑139 (MQ=255)
gcgTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTAt > 2:149461/1‑139 (MQ=255)
gTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATAccc > 1:985567/1‑112 (MQ=255)
gTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCg > 1:21146/1‑139 (MQ=255)
gTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCg > 1:301873/1‑139 (MQ=255)
gTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCg > 1:587342/1‑139 (MQ=255)
gTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCg > 1:795465/1‑139 (MQ=255)
gatgatGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAg > 1:617867/1‑139 (MQ=255)
tgatgGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCa < 1:65403/124‑1 (MQ=255)
aaCGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCg > 1:449607/1‑139 (MQ=255)
cGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGa < 1:1049750/139‑1 (MQ=255)
cTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGaa > 2:294216/1‑106 (MQ=255)
gATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGccc < 1:756903/139‑1 (MQ=255)
ccGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATg < 2:1168327/139‑1 (MQ=255)
cGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGc > 1:36966/1‑139 (MQ=255)
cGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACg < 1:471554/89‑1 (MQ=255)
tGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAg < 1:144013/91‑1 (MQ=255)
tGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCgg > 1:1290/1‑119 (MQ=255)
tGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCgg < 2:1290/119‑1 (MQ=255)
tGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGaaaaa > 1:229841/1‑139 (MQ=255)
tGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGaaaaa > 1:923998/1‑139 (MQ=255)
tGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGaaaaa > 2:1175378/1‑139 (MQ=255)
gCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGa < 1:894218/118‑1 (MQ=255)
gCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGa > 2:894218/1‑118 (MQ=255)
gCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAgg < 2:340953/139‑1 (MQ=255)
gCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAgg < 2:694231/139‑1 (MQ=255)
ccGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAg < 2:449607/139‑1 (MQ=255)
ccaccaCCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGttc > 2:569708/1‑139 (MQ=255)
caccacCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGt > 1:1175490/1‑103 (MQ=255)
accaccGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAg < 2:426531/71‑1 (MQ=255)
caccGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGccc > 2:366671/1‑113 (MQ=255)
gTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCa > 1:731275/1‑78 (MQ=255)
gTATCCATGCGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGGCAGTGATACCCGGAGCGACGGAAAGGCa < 2:731275/78‑1 (MQ=255)
tATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCgg > 2:877564/1‑94 (MQ=255)
tATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCt > 1:81158/1‑139 (MQ=255)
ccATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGaa < 2:81158/139‑1 (MQ=255)
ccATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGaa < 2:332964/139‑1 (MQ=255)
aTGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACg > 1:745184/1‑139 (MQ=255)
gggAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGcc > 2:978828/1‑139 (MQ=255)
ggAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGc > 1:425412/1‑106 (MQ=255)
ggAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCg > 1:318899/1‑139 (MQ=255)
ggAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCACTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCg < 2:467744/139‑1 (MQ=255)
aTGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCa < 2:489831/85‑1 (MQ=255)
aTGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCa > 1:489831/1‑85 (MQ=255)
aTGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGa > 1:1000667/1‑139 (MQ=255)
aTGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGa > 2:319767/1‑139 (MQ=255)
tGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACg > 2:775080/1‑56 (MQ=255)
tGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGttcatt > 2:1145572/1‑120 (MQ=255)
tGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGAt > 1:410579/1‑139 (MQ=255)
ggCGGTGTACTGCTGGCGGAGTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGAGGGTGGAAAAAGGCAGTTTATTCACGCTGAACGCCGGTGATa < 1:959256/139‑1 (MQ=255)
ggCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATa < 1:20494/139‑1 (MQ=255)
ggCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATa < 2:832370/139‑1 (MQ=255)
ggCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATa < 1:1110221/139‑1 (MQ=255)
ggCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATa < 1:347947/139‑1 (MQ=255)
cGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATACg < 2:597917/139‑1 (MQ=255)
cGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATACg < 2:1088061/139‑1 (MQ=255)
gtgtACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAgg > 1:1031584/1‑106 (MQ=255)
gtgtACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATACGGc < 2:164508/139‑1 (MQ=255)
tgtACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGaa < 1:539816/53‑1 (MQ=255)
aCTGCTGGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATACGGCCACg < 2:617867/139‑1 (MQ=255)
tgctgGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATACGGCCACGGa < 2:410579/139‑1 (MQ=255)
tgctgGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATACGGCCACGGa < 2:851770/139‑1 (MQ=255)
tgctgGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATACGGCCACGGa < 1:868203/139‑1 (MQ=255)
tgctgGCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATACGGCCACGGa < 2:540932/139‑1 (MQ=255)
gCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCCTTc < 2:800821/51‑1 (MQ=255)
gCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAgg < 2:1002238/95‑1 (MQ=255)
gCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATACGGcc < 1:280017/129‑1 (MQ=255)
gCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATACGGCCACGGATACCa > 2:1029558/1‑139 (MQ=255)
gCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATACGGCCACGGATACCa < 2:481871/139‑1 (MQ=255)
gCCGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATACGGCCACGGATACCa > 1:481871/1‑139 (MQ=255)
cGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGt < 2:871365/64‑1 (MQ=255)
cGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAgg > 1:875024/1‑68 (MQ=255)
cGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGccc < 2:179675/77‑1 (MQ=255)
cGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGc < 2:1068582/83‑1 (MQ=255)
cGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAgg < 2:126243/93‑1 (MQ=255)
cGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATACGGCCACGGATACCACg > 2:740773/1‑139 (MQ=255)
cGATTCCGGTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATACGGCCACGGATACCACg > 1:1071765/1‑139 (MQ=255)
gTGCCGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGaaaaa > 1:1170280/1‑83 (MQ=255)
cGCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATACGGCCACGGATACCACGGTAAATGGCGGa < 2:253590/139‑1 (MQ=255)
gCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATa > 2:503440/1‑109 (MQ=255)
gCTGTCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATa < 1:503440/109‑1 (MQ=255)
tCAGTGATACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATACGGCCACGGATACCACGGTAAATGGCGGACTGtt < 1:567449/139‑1 (MQ=255)
|
CTGACCGGACACACAGCCACTAATACCCGCGTGGATGATGGCGGAACGCTGGATGTCCGCAACGGTGGCACCGCCACCACCGTATCCATGGGAAATGGCGGTGTACTGCTGGCCGATTCCGGTGCCGCTGTCAGTGGTACCCGGAGCGACGGAAAGGCATTCAGTATCGGAGGCGGTCAGGCGGATGCCCTGATGCTGGAAAAAGGCAGTTCATTCACGCTGAACGCCGGTGATACGGCCACGGATACCACGGTAAATGGCGGACTGTT > NC_000913/2072592‑2072860
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
