Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F1 I2 R1	92	50.6	2362856	94.3%	2228173	111.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,634,940	A→G	S34G (AGC→GGC)	yhiM →	acid resistance protein, inner membrane

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,634,940	0	A	G	100.0%	288.4 / NA	76	S34G (AGC→GGC)	yhiM	acid resistance protein, inner membrane
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (42/34); total (42/34)

TATTTCAATATTAGCAGGGATACCTGAGGAGTTTAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAAGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACGTTTTACAATACATTGTTCCCCATTA  >  NC_000913/3634804‑3635075

tatTTCAATATTAGCAGGGATACCTGAGGAGTTTAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGc                                                                                                                                       <  1:181987/139‑1 (MQ=255)

   ttCAATATTAGCAGGGATACCTGAGGAGTTTAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAg                                                                                                                                    >  2:922005/1‑139 (MQ=255)

                gggATACCTGAGGAGTTTAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCgg                                                                                                                       >  1:900749/1‑139 (MQ=255)

                  gATACCTGAGGAGTTTAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGt                                                                                                                     >  1:466610/1‑139 (MQ=255)

                        tGAGGAGTTTAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCAtgtg                                                                                                               >  2:78885/1‑139 (MQ=255)

                         gaggagTTTAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGc                                                                                                              <  2:466610/139‑1 (MQ=255)

                               tttAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTcgc                                                                                                                         <  1:255725/122‑1 (MQ=255)

                               tttAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTcgc                                                                                                                         >  2:255725/1‑122 (MQ=255)

                               tttAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGAttt                                                                                                        >  2:944482/1‑139 (MQ=255)

                                 tAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGAtttat                                                                                                      >  1:443792/1‑137 (MQ=255)

                                 tAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTtct                                                                                                      >  2:1174695/1‑139 (MQ=255)

                                 tAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTtct                                                                                                      >  2:607103/1‑139 (MQ=255)

                                 tAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTtct                                                                                                      >  2:114650/1‑139 (MQ=255)

                                 tAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTGTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTtct                                                                                                      >  1:444254/1‑139 (MQ=255)

                                     gTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTgg                                                                                                  <  2:44316/139‑1 (MQ=255)

                                         aCATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTggcggc                                                                                              >  1:560941/1‑139 (MQ=255)

                                               atatCGGGTGGCTTTTCAAATTAATCCCTTTGAGTATGTGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGTAAGGCGAGTATTTCGTCGCGGGGCATGTGCTGATTTCTCTCGCGGCCATATg                                                                                        <  1:682150/139‑1 (MQ=255)

                                                tatCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGc                                                                                       >  1:345955/1‑139 (MQ=255)

                                                 atCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGcc                                                                                      <  2:560941/139‑1 (MQ=255)

                                                  tCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCt                                                                                     >  2:34150/1‑139 (MQ=255)

                                                  tCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCt                                                                                     >  2:539124/1‑139 (MQ=255)

                                                   cGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTg                                                                                    >  2:229258/1‑139 (MQ=255)

                                                    gggTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTgg                                                                                   >  1:1142282/1‑139 (MQ=255)

                                                    gggTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTgg                                                                                   >  1:1107857/1‑139 (MQ=255)

                                                     ggTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGc                                                                                  >  2:426141/1‑139 (MQ=255)

                                                     ggTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGc                                                                                  >  2:1023141/1‑139 (MQ=255)

                                                     ggTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGc                                                                                  >  1:673556/1‑139 (MQ=255)

                                                     ggTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGc                                                                                  >  2:478474/1‑139 (MQ=255)

                                                     ggTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGc                                                                                  >  1:546830/1‑139 (MQ=255)

                                                     ggTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGc                                                                                  >  1:332661/1‑139 (MQ=255)

                                                     ggTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGc                                                                                  >  1:1029555/1‑139 (MQ=255)

                                                     ggTGGCTTTTCAAATTAATCCCTTGGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCGGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGc                                                                                  >  2:682150/1‑139 (MQ=255)

                                                      gTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCa                                                                                 >  1:228268/1‑139 (MQ=255)

                                                       tGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCAtgt                                                                                                                <  1:70097/107‑1 (MQ=255)

                                                       tGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCAtgt                                                                                                                >  2:70097/1‑107 (MQ=255)

                                                        ggCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGTatt                                                                               >  2:759683/1‑139 (MQ=255)

                                                        ggCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCa                                                                                 >  2:975381/1‑137 (MQ=255)

                                                        ggCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCa                                                                                 <  1:975381/137‑1 (MQ=255)

                                                         gCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCatta                                                                              >  1:904235/1‑139 (MQ=255)

                                                                 aaTTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTAc                                                                      <  2:1107857/139‑1 (MQ=255)

                                                                     aaTCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCa                                                                  <  2:1060387/139‑1 (MQ=255)

                                                                     aaTCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCa                                                                  <  1:34150/139‑1 (MQ=255)

                                                                             tGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTtattat                                                          <  1:539124/139‑1 (MQ=255)

                                                                                    gggCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCg                                                   <  1:607103/139‑1 (MQ=255)

                                                                                     ggCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCa                                                                                 >  2:590209/1‑108 (MQ=255)

                                                                                     ggCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCa                                                                                 <  1:590209/108‑1 (MQ=255)

                                                                                               gTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCAcgcg                                        <  1:1023141/139‑1 (MQ=255)

                                                                                               gTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCAcgcg                                        >  2:274426/1‑139 (MQ=255)

                                                                                                     cgTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGt                                  <  2:726422/139‑1 (MQ=255)

                                                                                                     cgTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGt                                  <  1:1174695/139‑1 (MQ=255)

                                                                                                         aGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAAt                              <  2:1029555/139‑1 (MQ=255)

                                                                                                          ggTGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATa                             <  1:114650/139‑1 (MQ=255)

                                                                                                            tGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACg                           <  1:78885/139‑1 (MQ=255)

                                                                                                            tGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACg                           <  2:505557/139‑1 (MQ=255)

                                                                                                            tGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACg                           <  1:944482/139‑1 (MQ=255)

                                                                                                            tGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACg                           <  1:478474/139‑1 (MQ=255)

                                                                                                            tGGCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACg                           <  2:673556/139‑1 (MQ=255)

                                                                                                              gCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGcc                                                                                             >  2:532614/1‑71 (MQ=255)

                                                                                                              gCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGcc                                                                                             <  1:532614/71‑1 (MQ=255)

                                                                                                              gCTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACGtt                         <  2:900749/139‑1 (MQ=255)

                                                                                                               cTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTgg                                                                                   <  2:1100116/80‑1 (MQ=255)

                                                                                                               cTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTgg                                                                                   >  1:1100116/1‑80 (MQ=255)

                                                                                                               cTTTGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACGttt                        >  1:974163/1‑139 (MQ=255)

                                                                                                                tttGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACGtttt                       <  2:1142282/139‑1 (MQ=255)

                                                                                                                 ttGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACGTTTTa                      >  1:294717/1‑139 (MQ=255)

                                                                                                                 ttGTGCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACGTTTTa                      <  2:209180/139‑1 (MQ=255)

                                                                                                                  tgtgCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGcc                                                                                      >  2:643399/1‑74 (MQ=255)

                                                                                                                  tgtgCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGcc                                                                                      <  1:643399/74‑1 (MQ=255)

                                                                                                                  tgtgCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACGTTTTAc                     >  1:875849/1‑139 (MQ=255)

                                                                                                                    tgCTGGAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACGTTTTACaa                   >  2:141303/1‑139 (MQ=255)

                                                                                                                        ggAAAGTTCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACGTTTTACAATACa               <  2:904235/139‑1 (MQ=255)

                                                                                                                              ttCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACGTTTTACAATACATTGTTc         >  2:43592/1‑139 (MQ=255)

                                                                                                                              ttCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACGTTTTACAATACATTGTTc         >  2:424997/1‑139 (MQ=255)

                                                                                                                               tCAGGGCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACGTTTTACAATACATTGTTcc        <  2:546830/139‑1 (MQ=255)

                                                                                                                                    gCAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACGTTTTACAATACATTGTTCCCCatt   <  2:228268/139‑1 (MQ=255)

                                                                                                                                     cAAGGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACGTTTTACAATACATTGTTCCCCatta  <  1:922005/139‑1 (MQ=255)

TATTTCAATATTAGCAGGGATACCTGAGGAGTTTAAAGTGAACATATATATCGGGTGGCTTTTCAAATTAATCCCTTTGATTATGGGCTTAATTTGTATCGCGTTAGGTGGCTTTGTGCTGGAAAGTTCAGGGCAAAGCGAGTATTTCGTCGCGGGTCATGTGCTGATTTCTCTGGCGGCCATATGCCTGGCATTATTCACTACCGCATTTATTATCATTTCGCAGCTCACGCGCGGCGTTAATACGTTTTACAATACATTGTTCCCCATTA  >  NC_000913/3634804‑3635075

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A