Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F1 I2 R1
|
92 |
50.6 |
2362856 |
94.3% |
2228173 |
111.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,513,332 |
C→T |
L26L (CTG→CTA) |
fecC ← |
ferric citrate ABC transporter permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,513,332 | 0 | C | T | 100.0%
| 104.0
/ NA
| 31 | L26L (CTG→CTA) | fecC | ferric citrate ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (13/18); total (13/18) |
CGATCAGAACGGCGACCAGGCTTCGTGGCAAACGAAGGTTTTGCACCAGCGCTTCTGGTAGCGTTGGCGTGTGTCCAGGCAGCAGGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAACAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACGGGAAGCCCCCACAGCAGCACCGGGTGTTTTATCGCGGTCATTTCACAACGGTAAGCGGCTGATGGTGGAAGATTTTTACCGTGTCAGCGGCA > NC_000913/4513199‑4513460
|
cGATCAGAACGGCGACCAGGCTTCGTGGCAAACGAAGGTTTTGCACCAGCGCTTCTGGTAGCGTTGGCGTGTGTCCAGGCAGCAGGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACt < 2:706354/139‑1 (MQ=255)
gAACGGCGACCAGGCTTCGTGGCAAACGAAGGTTTTGCACCAGCGCTTCTGGTAGCGTTGGCGTGTGTCCAGGCAGCAGGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCa < 2:1139993/139‑1 (MQ=255)
aCGGCGACCAGGCTTCGTGGCAAACGAAGGTTTTGCACCAGCGCTTCTGGTAGCGTTGGCGTGTGTCCAGGCAGCAGGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGa < 1:772961/139‑1 (MQ=255)
ggCTTCGTGGCAAACGAAGGTTTTGCACCAGCGCTTCTGGTAGCGTTGGCGTGTGTCCAGGCAGCAGGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGAAaataataat < 1:1170193/139‑1 (MQ=255)
cGTGGCAAACGAAGGTTTTGCACCAGCGCTTCTGGTAGCGTTGGCGTGTGTCCAGGCAGCAGGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGtg < 2:1028274/139‑1 (MQ=255)
tGGCAAACGAAGGTTTTGCACCAGCGCTTCTGGTAGCGTTGGCGTGTGTCCAGGCAGCAGGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCa > 2:1064301/1‑120 (MQ=255)
tGGCAAACGAAGGTTTTGCACCAGCGCTTCTGGTAGCGTTGGCGTGTGTCCAGGCAGCAGGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCa < 1:1064301/120‑1 (MQ=255)
ttGCACCAGCGCTTCTGGTAGCGTTGGCGTGTGTCCAGGCAGCAGGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACGGGAAGcccc < 2:865966/139‑1 (MQ=255)
aGCGCTTCTGGTAGCGTTGGCGTGTGTCCAGGCAGCAGGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACGGGAAGcccc > 1:403377/1‑132 (MQ=255)
aGCGCTTCTGGTAGCGTTGGCGTGTGTCCAGGCAGCAGGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACGGGAAGcccc < 2:403377/132‑1 (MQ=255)
cTTCTGGTAGCGTTGGCGTGTGTCCAGGCAGCAGGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACgg > 1:179257/1‑120 (MQ=255)
cTTCTGGTAGCGTTGGCGTGTGTCCAGGCAGCAGGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACgg < 2:179257/120‑1 (MQ=255)
gTTGGCGTGTGTCCAGGCAGCAGGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACGGGAAGCCCCCACAGCAGCACCGGGTGTTTTa > 2:738475/1‑139 (MQ=255)
cGTGTGTCCAGGCAGCAGGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACGGGAAGCCCCCACAGCAGCACCGGGTGTTTTATcgcg > 2:825217/1‑139 (MQ=255)
gcagGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACGGGAAGCCCCCACAGCAGCACCGGGTGTTTTATCGCGGTCATTTCACAACg > 2:895609/1‑139 (MQ=255)
gcagGGCGCGGGTTGCAGCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGAAAATACTAATAAGTGCTGCAACGGGAAGCCCCCACAGCAGCACCGGGTGTTTTATCGCGGTCATTTCACAACg > 1:674123/1‑139 (MQ=255)
cagGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGaaaa < 2:408144/68‑1 (MQ=255)
cagGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGaaaa > 1:408144/1‑68 (MQ=255)
agGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACGGGAAGCCCCCACAGCAGCACCGGGTGTTTTATCGCGGTCATTTCACAACGGt < 2:462967/139‑1 (MQ=255)
ggCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACGGGAAGCCCCCACAGCAGCACCGGGTGTTTTATCGCGGTCATTTCACAACGGTaa < 1:825217/139‑1 (MQ=255)
cgcgGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGaaa < 2:1174054/62‑1 (MQ=255)
cgcgGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGaaa > 1:1174054/1‑62 (MQ=255)
cATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACGGGAAGCCCCCACAGCAGCACCGGGTGTTTTATCGCGGTCATTTCACAACGGTAAGCGGCTGAtgg > 2:5856/1‑139 (MQ=255)
cAGGAATGGCCGAGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACGGGAAGCCCCCACAGCAGCACCGGGTGTTTTATCGCGGTCATTTCACAACGGTAAGCGGCTGATGGTGGAAGATTTTTAcc < 1:5856/139‑1 (MQ=255)
gAATGGCCGAGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACGGGAAGCCCCCACAGCAGCACCGGGTGTTTTATCGCGGTCATTTCACAACGGTAAGCGGCTGATGGTGGAAGATTTTTACCgtg > 2:999662/1‑139 (MQ=255)
aTGGCCGAGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACGGGAAGCCCCCACAGCAGCACCGGGTGTTTTATCGCGGTCATTTCACAACGGTAAGCGGCTGATGGTGGAAGATTTTTACCGTGTc < 1:895609/139‑1 (MQ=255)
tGGCCGAGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACGGGAAGCCCCCACAGCAGCACCGGGTGTTTTATCGCGGTCATTTCACAACGGTAAGCGGCTg > 2:153907/1‑114 (MQ=255)
tGGCCGAGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACGGGAAGCCCCCACAGCAGCACCGGGTGTTTTATCGCGGTCATTTCACAACGGTAAGCGGCTg < 1:153907/114‑1 (MQ=255)
aGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACGGGAAGCCCCCACAGCAGCACCGGGTGTTTTATCGCGGTCATTTCACAACGGTAAGCGGCTGATGGTGGAAGATTTTTACCGTGTCAGCGGCa < 2:217413/139‑1 (MQ=255)
aGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACGGGAAGCCCCCACAGCAGCACCGGGTGTTTTATCGCGGTCATTTCACAACGGTAAGCGGCTGATGGTGGAAGATTTTTACCGTGTCAGCGGCa > 2:642558/1‑139 (MQ=255)
aGTAGCAAAATAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACGGGAAGCCCCCACAGCAGCACCGGGTGTTTTATCGCGGTCATTTCACAACGGTAAGCGGCTGATGGTGGAAGATTTTTACCGTGTCAGCGGCa < 2:674123/139‑1 (MQ=255)
|
CGATCAGAACGGCGACCAGGCTTCGTGGCAAACGAAGGTTTTGCACCAGCGCTTCTGGTAGCGTTGGCGTGTGTCCAGGCAGCAGGGCGCGGGTTGCATCTGCTCCGGAAACAGGAATGGCCGAGTAGCAAAACAGACTCAGCCAGAAAATAATAATAAGTGCTGCAACGGGAAGCCCCCACAGCAGCACCGGGTGTTTTATCGCGGTCATTTCACAACGGTAAGCGGCTGATGGTGGAAGATTTTTACCGTGTCAGCGGCA > NC_000913/4513199‑4513460
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
