Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F1 I1 R1
|
83 |
73.5 |
3575638 |
92.3% |
3300313 |
107.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,043,412 |
G→A |
A71V (GCA→GTA) |
yqfB ← |
UPF0267 family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,043,412 | 0 | G | A | 100.0%
| 244.1
/ NA
| 70 | A71V (GCA→GTA) | yqfB | UPF0267 family protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (37/33); total (37/33) |
AATTTCAACTAACAGGCGTGAGTTCAATTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTGCATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAGTGCGATTCAGACTCGTCG > NC_000913/3043284‑3043546
|
aaTTTCAACTAACAGGCGTGAGTTCAATTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTtc > 2:149751/1‑139 (MQ=255)
aaCTAACAGGCGTGAGTTCAATTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTtcagtcag < 2:14444/139‑1 (MQ=255)
aCTAACAGGCGTGAGTTCAATTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGc < 1:1454773/139‑1 (MQ=255)
aCTAACAGGCGTGAGTTCAATTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGc > 1:1663387/1‑139 (MQ=255)
tAACAGGCGTGAGTTCAATTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGt < 2:1323680/139‑1 (MQ=255)
cAGGCGTGAGTTCAATTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGttt < 2:810875/124‑1 (MQ=255)
cAGGCGTGAGTTCAATTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGttt > 1:810875/1‑124 (MQ=255)
cAGGCGTGAGTTCAATTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATc > 2:1673439/1‑139 (MQ=255)
cAGGCGTGAGTTCAATTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATc > 1:156499/1‑139 (MQ=255)
aGGCGTGAGTTCAATTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATcc < 1:149751/139‑1 (MQ=255)
cGTGAGTTCAATTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACAt > 1:137428/1‑116 (MQ=255)
cGTGAGTTCAATTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACAt < 2:137428/116‑1 (MQ=255)
gTGAGTTCAATTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCg > 1:56513/1‑139 (MQ=255)
tGAGTTCAATTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGt > 2:1025986/1‑139 (MQ=255)
aGTTCAATTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTa > 1:1635740/1‑139 (MQ=255)
aGTTCAATTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTa > 1:1506613/1‑139 (MQ=255)
aGTTCAATTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTa > 2:656985/1‑139 (MQ=255)
aTTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTg > 1:204774/1‑139 (MQ=255)
aGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTg > 2:1331232/1‑139 (MQ=255)
aCATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCg < 2:404353/139‑1 (MQ=255)
cATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTtcag < 2:1574071/106‑1 (MQ=255)
cATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTtcag > 1:1574071/1‑106 (MQ=255)
aTTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGt < 2:794488/139‑1 (MQ=255)
aTTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGt < 1:453928/139‑1 (MQ=255)
aaaTTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACAt < 1:603908/92‑1 (MQ=255)
aaaTTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACAt > 2:603908/1‑92 (MQ=255)
tCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCaa < 2:1506613/139‑1 (MQ=255)
gtCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGt > 2:1724560/1‑139 (MQ=255)
gtCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGt < 2:355275/139‑1 (MQ=255)
tCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTc > 2:1606302/1‑139 (MQ=255)
cTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTtcag < 1:783748/77‑1 (MQ=255)
cTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTtcag > 2:783748/1‑77 (MQ=255)
gACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGt < 1:35819/97‑1 (MQ=255)
gACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGt > 2:35819/1‑97 (MQ=255)
aTGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTtcag < 2:626537/64‑1 (MQ=255)
aTGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTtcag > 1:626537/1‑64 (MQ=255)
gTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCg > 1:1530405/1‑139 (MQ=255)
cAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGac > 1:1563101/1‑139 (MQ=255)
cAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGac < 1:619116/139‑1 (MQ=255)
aGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTtcagtcag > 2:445734/1‑63 (MQ=255)
aGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTtcagtcag < 1:445734/63‑1 (MQ=255)
aGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTa > 1:552427/1‑67 (MQ=255)
aGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTa < 2:552427/67‑1 (MQ=255)
aGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTa > 2:76093/1‑77 (MQ=255)
aGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTa < 1:76093/77‑1 (MQ=255)
aGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTc < 2:1761690/134‑1 (MQ=255)
aGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTc > 1:1761690/1‑134 (MQ=255)
aGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGaca > 2:650024/1‑139 (MQ=255)
aGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGaca < 2:1530129/139‑1 (MQ=255)
aGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGaca > 1:1567745/1‑139 (MQ=255)
tGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGt > 2:96685/1‑114 (MQ=255)
tGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGt < 1:96685/114‑1 (MQ=255)
aCTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACg < 2:953152/72‑1 (MQ=255)
aCTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACg > 1:953152/1‑72 (MQ=255)
tttCAGTTCAGTCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCa > 2:691384/1‑139 (MQ=255)
ttcagttcagTCATGGTCATATTTTCCTGTTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCAc < 1:458918/139‑1 (MQ=255)
gttcagtCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCg > 2:952666/1‑74 (MQ=255)
gttcagtCAGGGTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCg < 1:952666/74‑1 (MQ=255)
gggTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAGTg < 2:204774/139‑1 (MQ=255)
gggTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAGTg < 2:56513/139‑1 (MQ=255)
gggTCATATTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAGTg < 2:156499/139‑1 (MQ=255)
atatTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGt < 2:1696789/44‑1 (MQ=255)
atatTTTCCTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGt > 1:1696789/1‑44 (MQ=255)
cTGCTCTACATGTTTTTCAGTCAGCGTATCCAGCGTTACGTTTGAGTTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAGTGCGATTCAGACtcg > 1:1714773/1‑139 (MQ=255)
ctctACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCg > 1:503019/1‑49 (MQ=255)
ctctACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCg < 2:503019/49‑1 (MQ=255)
ctctACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAGTGCGATTCAGACtcgtcg > 2:1240654/1‑139 (MQ=255)
ctctACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAGTGCGATTCAGACtcgtcg < 1:1240654/139‑1 (MQ=255)
tctACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAGTg > 1:225475/1‑122 (MQ=255)
tctACATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAGTg < 2:225475/122‑1 (MQ=255)
|
AATTTCAACTAACAGGCGTGAGTTCAATTTAAAGACATTTAAATTCAATCACATAAAATTGTGTCTGACCGGGATAGATGTCAGCAATGACTTTTTTCAGTTCAGTCAGGGTCATATTTTCCTGCTCTGCATGTTTTTCAGTCAGCGTATCCAGCGTTACGGTTGAGGTTGCGGTGACTTCAATCGTGCAAAAATAACCGTCATCTTCAAAACGTCCGACACGAAGCACATCACCCGTTTTGAAGTGCGATTCAGACTCGTCG > NC_000913/3043284‑3043546
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
