Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F1 I1 R1
|
83 |
73.5 |
3575638 |
92.3% |
3300313 |
107.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,653,231 |
Δ2,028 bp |
IS5‑mediated |
[yhiS]–[yhiD] |
[yhiS], slp, dctR, [yhiD] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3652104–3653236 |
3655258 |
2023–3155 |
21 [20] |
[0] 81 |
insH1–[yhiD] |
insH1, yhiS, slp, dctR, [yhiD] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 3653230 | NA (NA) | 80 (1.080) |
55/214 |
0.1 |
100% |
noncoding (1/1195 nt) |
IS5 |
repeat region |
| ? | NC_000913 |
3655259 = |
0 (0.000) | coding (644/648 nt) |
yhiD |
putative Mg(2+) transport ATPase, inner membrane protein |
GATK/CNVnator alignment
N/A
