Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F1 I1 R1
|
83 |
73.5 |
3575638 |
92.3% |
3300313 |
107.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,285,518 |
A→G |
I618I (ATT→ATC) |
acs ← |
acetyl‑CoA synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,285,518 | 0 | A | G | 100.0%
| 220.3
/ NA
| 58 | I618I (ATT→ATC) | acs | acetyl‑CoA synthetase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (35/23); total (35/23) |
CGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCAATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCGGACTTCTGCGTACAGTTC > NC_000913/4285383‑4285652
|
cGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGAtt > 2:1358870/1‑139 (MQ=255)
aCTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAg > 2:1549505/1‑139 (MQ=255)
gCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATa < 2:654004/139‑1 (MQ=255)
cATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTGTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATAc > 1:1265404/1‑139 (MQ=255)
ggCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGgcgc > 1:423497/1‑139 (MQ=255)
tgtgGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAAtt > 1:242608/1‑139 (MQ=255)
tACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCgg > 2:1240160/1‑139 (MQ=255)
cGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAg > 2:1221137/1‑139 (MQ=255)
cGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAg > 1:1565466/1‑139 (MQ=255)
cGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAg > 1:1075068/1‑139 (MQ=255)
cGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAg > 1:514072/1‑139 (MQ=255)
cGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAg < 1:47890/139‑1 (MQ=255)
tGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCgg > 1:1109339/1‑139 (MQ=255)
tCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAg < 1:1782599/131‑1 (MQ=255)
tCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAg > 2:1782599/1‑131 (MQ=255)
cgATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAgg > 2:619519/1‑139 (MQ=255)
tAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAg < 2:423497/139‑1 (MQ=255)
ctTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGGCCa > 1:614277/1‑139 (MQ=255)
ttCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAg < 2:242608/139‑1 (MQ=255)
ttCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAg > 1:372876/1‑139 (MQ=255)
gcTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCAc > 2:204890/1‑139 (MQ=255)
cTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACg > 2:895092/1‑139 (MQ=255)
ttCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGt > 1:570512/1‑139 (MQ=255)
ttCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGt > 2:504170/1‑139 (MQ=255)
gACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTa > 1:412463/1‑106 (MQ=255)
gACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTa < 2:412463/106‑1 (MQ=255)
gACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGc < 2:289178/139‑1 (MQ=255)
aTCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCggg < 1:1240160/139‑1 (MQ=255)
ggCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCa < 2:1075068/139‑1 (MQ=255)
ggCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCa < 1:1075500/139‑1 (MQ=255)
gCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTgc < 2:589906/52‑1 (MQ=255)
gCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTgc > 1:589906/1‑52 (MQ=255)
gCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCaa < 2:1265404/139‑1 (MQ=255)
cGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATctct > 1:639504/1‑139 (MQ=255)
gAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTAc < 2:553145/139‑1 (MQ=255)
gAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTAc > 1:601300/1‑139 (MQ=255)
aTCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTa < 2:79314/133‑1 (MQ=255)
aTCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTa > 1:79314/1‑133 (MQ=255)
aTCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCAcc < 2:1565466/139‑1 (MQ=255)
aTCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCAcc < 2:1109339/139‑1 (MQ=255)
aTCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCAcc < 1:204890/139‑1 (MQ=255)
aTCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCAcc < 2:570512/139‑1 (MQ=255)
cGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCa > 1:771307/1‑139 (MQ=255)
cccAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGtt < 2:1268112/69‑1 (MQ=255)
cccAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGtt > 1:1268112/1‑69 (MQ=255)
cccAGGTTGCTGGTATCGCCCGCCGCGATTTTACGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGt > 2:1647189/1‑139 (MQ=255)
gTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCAcc < 2:844789/130‑1 (MQ=255)
gTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCAcc > 1:844789/1‑130 (MQ=255)
gTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCgg > 1:982484/1‑139 (MQ=255)
aTCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCGGACTTCTGCg < 1:1221137/139‑1 (MQ=255)
tCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCGGa < 1:399563/130‑1 (MQ=255)
tCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCGGa > 2:399563/1‑130 (MQ=255)
tCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCGGACTTCt > 2:995809/1‑135 (MQ=255)
tCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCGGACTTCt < 1:995809/135‑1 (MQ=255)
tCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCGGACTTCTGCGt > 1:806007/1‑139 (MQ=255)
ccgcGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCGGACTTCTGCGTACAGTTc > 1:973356/1‑139 (MQ=255)
ccgcGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCGGACTTCTGCGTACAGTTc > 1:70221/1‑139 (MQ=255)
ccgcGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCGGACTTCTGCGTACAGTTc > 1:1719182/1‑139 (MQ=255)
cgcgATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGTGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGc > 1:887217/1‑95 (MQ=255)
|
CGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCAATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCGGACTTCTGCGTACAGTTC > NC_000913/4285383‑4285652
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
