Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F1 I2 R1
|
94 |
59.5 |
3027142 |
91.9% |
2781943 |
108.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,285,518 |
A→G |
I618I (ATT→ATC) |
acs ← |
acetyl‑CoA synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,285,518 | 0 | A | G | 100.0%
| 237.5
/ NA
| 64 | I618I (ATT→ATC) | acs | acetyl‑CoA synthetase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (32/32); total (32/32) |
CGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCAATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCGGACTTCTGCGTACAGTTC > NC_000913/4285383‑4285652
|
cGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGAtt > 2:1063878/1‑139 (MQ=255)
aCCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTgc < 1:36425/139‑1 (MQ=255)
aCCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTgc < 1:25987/139‑1 (MQ=255)
tCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGaa > 2:1122315/1‑139 (MQ=255)
gCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATa < 1:869537/139‑1 (MQ=255)
gCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATa < 1:1431466/139‑1 (MQ=255)
gCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATa < 2:450667/139‑1 (MQ=255)
cATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATAc < 2:1037951/139‑1 (MQ=255)
cATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATAc > 2:696367/1‑139 (MQ=255)
cATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATAc > 2:606934/1‑139 (MQ=255)
aTCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACg < 2:318931/139‑1 (MQ=255)
aTTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTgcg < 1:304394/122‑1 (MQ=255)
aTTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTgcg > 2:304394/1‑122 (MQ=255)
ggTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGc > 1:269044/1‑139 (MQ=255)
ggTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGc < 1:606934/139‑1 (MQ=255)
ggTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGc < 1:1173691/139‑1 (MQ=255)
cGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAg > 1:1482709/1‑139 (MQ=255)
cGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAg < 2:1029230/139‑1 (MQ=255)
gATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGc < 1:800075/139‑1 (MQ=255)
tGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGt < 1:736832/139‑1 (MQ=255)
tGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGACGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGt < 1:956116/139‑1 (MQ=255)
gCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGt > 2:1133458/1‑138 (MQ=255)
gCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGt < 1:1133458/138‑1 (MQ=255)
ctctTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTc > 1:1132214/1‑139 (MQ=255)
ctctTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTc < 1:283383/139‑1 (MQ=255)
ttCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACg < 2:756210/93‑1 (MQ=255)
ttCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACg > 1:756210/1‑93 (MQ=255)
ttCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAg < 1:538172/139‑1 (MQ=255)
agcagcTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTgca > 2:675877/1‑139 (MQ=255)
gcTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTgcg > 1:616710/1‑76 (MQ=255)
gcTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTgcg < 2:616710/76‑1 (MQ=255)
cTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGt > 1:970153/1‑122 (MQ=255)
cTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACg > 1:1127478/1‑139 (MQ=255)
cTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACg > 1:121769/1‑139 (MQ=255)
cTTCTCGACTACGCCAGGATCGGCAAGCATCGAGGTATCGCCCAGGCTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGt < 2:970153/122‑1 (MQ=255)
ccAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCa > 1:814810/1‑139 (MQ=255)
cAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAg < 1:472558/139‑1 (MQ=255)
gATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCgg > 1:727258/1‑139 (MQ=255)
ggCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCa > 2:984380/1‑139 (MQ=255)
ggCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCa > 2:1114264/1‑139 (MQ=255)
ggCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCa > 1:1158305/1‑139 (MQ=255)
gCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATa > 2:1107664/1‑60 (MQ=255)
gCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATa < 1:1107664/60‑1 (MQ=255)
gCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATa > 1:1204100/1‑60 (MQ=255)
gCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATa < 2:1204100/60‑1 (MQ=255)
gCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCg < 1:938459/102‑1 (MQ=255)
gCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCg > 2:938459/1‑102 (MQ=255)
gCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCACATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGt > 2:1512939/1‑100 (MQ=255)
gCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCACATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGt < 1:1512939/100‑1 (MQ=255)
cGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATctct > 2:1449607/1‑139 (MQ=255)
cGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATctct > 1:1395062/1‑139 (MQ=255)
cGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATctct > 1:1427229/1‑139 (MQ=255)
cGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTAGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATctct > 2:979544/1‑139 (MQ=255)
tCGCCCAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCAccc < 2:658449/139‑1 (MQ=255)
cAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCa > 1:431823/1‑47 (MQ=255)
cAGGTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCa < 2:431823/47‑1 (MQ=255)
ggTTGCTGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCg < 2:1132214/139‑1 (MQ=255)
tGGTATCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCGGACTTc > 1:294610/1‑139 (MQ=255)
aTCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCGGACTTCTGCg < 1:15755/139‑1 (MQ=255)
tCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAg > 1:237168/1‑62 (MQ=255)
tCGCCCGCCGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAg < 2:237168/62‑1 (MQ=255)
gcccgccGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCGGACTTCTGCGTAc < 2:1482709/139‑1 (MQ=255)
cccgccGCGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCGGACTTCTGCGTACa < 2:727258/139‑1 (MQ=255)
ccgcGATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCGGACTTCTGCGTACAGTTc > 2:610442/1‑139 (MQ=255)
|
CGTTACCGACTCGCATCGGGCAATTGTGGGTTACGATGGCATCGCGATAGCCTGCTTCTCTTCAAGCAGCTTCTCGACTACGCCAGGATCGGCAAGCGTCGAGGTATCGCCCAGGTTGCTGGTATCGCCCGCCGCAATTTTGCGCAGAATACGGCGCATAATTTTGCCGGAGCGGGTTTTAGGCAGGGAGTCGGTCCAGTGCAGCACGTCTGGCGTCGCCAGCGGGCCAATCTCTTTACGCACCCAGTTGCGGACTTCTGCGTACAGTTC > NC_000913/4285383‑4285652
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
