Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F1 I1 R1	67	31.4	1402038	96.1%	1347358	109.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,538,491	C→T	G92D (GGC→GAC)	nanM ←	N‑acetylneuraminic acid mutarotase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,538,491	0	C	T	100.0%	160.9 / NA	47	G92D (GGC→GAC)	nanM	N‑acetylneuraminic acid mutarotase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (25/22); total (25/22)

TCACATGGCCCGCCATGCCCATCGGCGCGTGCGACATCAATTTAACCCAACTATTGGTTTTGGGGTTGTATTTGTGTACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGCCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCATTTTTTATCTTTGGCCTGTGTATCCAGCTTGTACCATGCCGTACCTGCG  >  NC_000913/4538369‑4538625

tCACATGGCCCGCCATGCCCATCGGCGCGTGCGACATCAATTTAACCCAACTATTGGTTTTGGGGTTGTATTTGTGTACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCaa‑‑a                                                                                                                                 <  2:152772/130‑1 (MQ=255)

tCACATGGCCCGCCATGCCCATCGGCGCGTGCGACATCAATTTAACCCAACTATTGGTTTTGGGGTTGTATTTGTGTACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCaa‑‑a                                                                                                                                 >  1:152772/1‑130 (MQ=255)

tCACATGGCCCGCCATGCCCATCGGCGCGTGCGACATCAATTTAACCCAACTATTGGTTTTGGGGTTGTATTTGTGTACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAg                                                                                                                        >  1:84535/1‑139 (MQ=255)

tCACATGGCCCGCCATGCCCATCGGCGCGTGCGACATCAATTTAACCCAACTATTGGTTTTGGGGTTGTATTTGTGTACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAg                                                                                                                        >  1:521024/1‑139 (MQ=255)

                 cccATCGGCGCGTGCGACATCAATTTAACCCAACTATTGGTTTTGGGGTTGTATTTGTGTACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATg                                                                                                       <  2:84535/139‑1 (MQ=255)

                 cccATCGGCGCGTGCGACATCAATTTAACCCAACTATTGGTTTTGGGGTTGTATTTGTGTACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATg                                                                                                       <  2:521024/139‑1 (MQ=255)

                   cATCGGCGCGTGCGACATCAATTTAACCCAACTATTGGTTTTGGGGTTGTATTTGTGTACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCa                                                                                                     <  1:62455/139‑1 (MQ=255)

                         cgcgTGCGACATCAATTTAACCCAACTATTGGTTTTGGGGTTGTATTTGTGTACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGtt                                                                                               >  2:286144/1‑139 (MQ=255)

                           cgTGCGACATCAATTTAACCCAACTATTGGTTTTGGGGTTGTATTTGTGTACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGc                                                                                             >  1:25108/1‑139 (MQ=255)

                                  cATCAATTTAACCCAACTATTGGTTTTGGGGTTGTATTTGTGTACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGAtct                                                                                      >  2:544395/1‑139 (MQ=255)

                                        tttAACCCAACTATTGGTTTTGGGGTTGTATTTGTGTACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGt                                                                                <  2:25108/139‑1 (MQ=255)

                                        tttAACCCAACGATTGGTTTTGGGGTTGTATTTGTGTACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGt                                                                                <  2:454429/139‑1 (MQ=255)

                                            aCCCAACTATTGGTTTTGGGGTTGTATTTGTGTACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTccc                                                                                                                  >  2:375371/1‑101 (MQ=255)

                                            aCCCAACTATTGGTTTTGGGGTTGTATTTGTGTACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGcc                                                                                                                  <  1:375371/101‑1 (MQ=255)

                                                       ggTTTTGGGGTTGTATTTGTGTACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCa                                                                 >  2:430635/1‑139 (MQ=255)

                                                                   gTATTTGTGTACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGa                                                                                                                       <  1:293002/73‑1 (MQ=255)

                                                                   gTATTTGTGTACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGa                                                                                                                       >  2:293002/1‑73 (MQ=255)

                                                                           gtACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCAtttttt                                             >  2:302693/1‑139 (MQ=255)

                                                                            tACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCtt                                                                                           <  2:484651/92‑1 (MQ=255)

                                                                            tACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCtt                                                                                           >  1:484651/1‑92 (MQ=255)

                                                                              cGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAAt                                                                    <  1:151868/113‑1 (MQ=255)

                                                                              cGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAAt                                                                    >  2:151868/1‑113 (MQ=255)

                                                                              cGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCATTTTTTATc                                          >  1:236737/1‑139 (MQ=255)

                                                                              cGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCATTTTTTATc                                          >  2:470885/1‑139 (MQ=255)

                                                                              cGTCATTAAATACCTGAGTCAAGCACTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCATTTTTTATc                                          >  2:65546/1‑139 (MQ=255)

                                                                              cGTCATTAAACACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGt                                                                                                >  2:170284/1‑85 (MQ=255)

                                                                              cGTCATTAAACACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGt                                                                                                <  1:170284/85‑1 (MQ=255)

                                                                                    tAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCATTTTTTATCTTTGGc                                    >  1:133094/1‑139 (MQ=255)

                                                                                           cTGAGTCAAGCCCTCGCTGTTTTTGTCAATGTCGCCAA‑‑ACACATACAGATTGCAATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCATTTTTTATCttt                                       <  2:421423/129‑1 (MQ=255)

                                                                                           cTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCATTTTTTATCttt                                       >  1:421423/1‑129 (MQ=255)

                                                                                           cTGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCATTTTTTATCTTTGGCCTGTGTa                             <  1:544395/139‑1 (MQ=255)

                                                                                            tGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCATTTTTTATCTTTGGCCTGTGTAt                            <  1:286144/139‑1 (MQ=255)

                                                                                            tGAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCATTTTTTATCTTTGGCCTGTGTAt                            <  1:302693/139‑1 (MQ=255)

                                                                                             gAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCa                                                                                                                                     >  2:310317/1‑35 (MQ=255)

                                                                                             gAGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCa                                                                                                                                     <  1:310317/35‑1 (MQ=255)

                                                                                              aGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCATTTTTTATCTTTGGCCTGTGTATcc                          >  1:544815/1‑139 (MQ=255)

                                                                                              aGTCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTGGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCATTTTTTATCTTTGGCCTGTGTATcc                          >  1:77080/1‑139 (MQ=255)

                                                                                                tCAAGCCCTCGCTGTTTTTGCCAATGTCGCCAAACACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCATTTTTTATCTTTGGCCTGTGTATcc                          >  2:102219/1‑139 (MQ=255)

                                                                                                     cccTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAAt                                                                    >  1:455554/1‑90 (MQ=255)

                                                                                                     cccTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAAt                                                                    <  2:455554/90‑1 (MQ=255)

                                                                                                      ccTCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCATTTTTTATCTTTGGCCTGTGTATCCAGCTTGTa                  <  2:133094/139‑1 (MQ=255)

                                                                                                        tCGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCATTTTTTATCTTTGGCCTGTGTATCCAGCTTGTAcc                >  2:141564/1‑139 (MQ=255)

                                                                                                         cGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGt                                                                                >  2:462374/1‑74 (MQ=255)

                                                                                                         cGCTGTTTTTGCCAATGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGt                                                                                <  1:462374/74‑1 (MQ=255)

                                                                                                                tttGCCAATGTCGCCAAACACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCATTTTTTATCTTTGGCCTGTGTATCCAGCTTGTACCATGCCg          <  1:102219/139‑1 (MQ=255)

                                                                                                                      aaTGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCATTTTTTATCTTTGGCCTGTGTATCCAGCTTGTACCATGCCGTACCTgcg  <  2:544815/139‑1 (MQ=255)

                                                                                                                      aaTGTCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCATTTTTTATCTTTGGCCTGTGTATCCAGCTTGTACCATGCCGTACCTgcg  <  1:141564/139‑1 (MQ=255)

TCACATGGCCCGCCATGCCCATCGGCGCGTGCGACATCAATTTAACCCAACTATTGGTTTTGGGGTTGTATTTGTGTACGTCATTAAATACCTGAGTCAAGCCCTCGCTGTTTTTGCCAATGCCGCCAA‑‑ACACATACAGATTGCCATCAATAAATGCAGAGGTTGCTTGATCTCTTGGTCCGCCAGGGAATGCAGCTAACGCTGTCCATTTTTTATCTTTGGCCTGTGTATCCAGCTTGTACCATGCCGTACCTGCG  >  NC_000913/4538369‑4538625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A