Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F1 I2 R1
|
70 |
59.9 |
2639336 |
94.5% |
2494172 |
113.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,418,135 |
T→C |
*1035Q (TAA→CAA) |
acrF → |
multidrug efflux system protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,418,135 | 0 | T | C | 100.0%
| 385.4
/ NA
| 102 | *1035Q (TAA→CAA) | acrF | multidrug efflux system protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (54/48); total (54/48) |
Only 100 of 102 total aligned reads displayed.
CGGTGCCGGCAGTGGCGCGCAGAACGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAGTTCCCGCTCCCTTCACTATTTTTA > NC_000913/3418008‑3418264
|
cGGTGCCGGCAGTGGCGCGCAGAACGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAg < 2:1187462/135‑1 (MQ=255)
cGGTGCCGGCAGTGGCGCGCAGAACGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAg > 1:1187462/1‑135 (MQ=255)
cGGTGCCGGCAGTGGCGCGCAGAACGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAAc > 2:948192/1‑139 (MQ=255)
tGCCGGCAGTGGCGCGCAGAACGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGa < 2:885109/133‑1 (MQ=255)
tGCCGGCAGTGGCGCGCAGAACGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGa > 1:885109/1‑133 (MQ=255)
tGCCGGCAGTGGCGCGCAGAACGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATa > 1:349276/1‑139 (MQ=255)
ccGGCAGTGGCGCGCAGAACGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATaaa > 2:9032/1‑139 (MQ=255)
ggCAGTGGCGCGCAGAACGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAgg > 1:49092/1‑139 (MQ=255)
ggCAGTGGCGCGCAGAACGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAgg > 2:1127383/1‑139 (MQ=255)
ggCAGTGGCGCGCAGAACGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAgg > 1:392691/1‑139 (MQ=255)
cgcAGAACGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCggg > 1:1153432/1‑139 (MQ=255)
cgcAGAACGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCggg < 2:391539/139‑1 (MQ=255)
cgcAGAACGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTGGTGGTGATCCGCCGTTGCGTTAAAGGACAAATCAGAAACACAAAGGCGCTTTCggg < 1:916883/139‑1 (MQ=255)
aGAACGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGc < 1:509027/139‑1 (MQ=255)
aaCGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCt < 1:632801/139‑1 (MQ=255)
aaCGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCt > 2:925202/1‑139 (MQ=255)
aaCGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCt > 2:632801/1‑139 (MQ=255)
gggTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTattatt < 2:670717/139‑1 (MQ=255)
aTCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTACGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCa > 2:1111012/1‑139 (MQ=255)
cGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCggg < 2:139779/120‑1 (MQ=255)
cGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCggg > 1:139779/1‑120 (MQ=255)
ggTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCggg > 2:368949/1‑117 (MQ=255)
ggTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCggg < 1:368949/117‑1 (MQ=255)
ggTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGaa > 2:1006060/1‑139 (MQ=255)
tGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCggg < 1:175195/112‑1 (MQ=255)
tGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCggg > 2:175195/1‑112 (MQ=255)
gggAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCAt < 2:392691/139‑1 (MQ=255)
gggAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCAt < 1:174515/139‑1 (MQ=255)
ggaATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCt > 1:737185/1‑112 (MQ=255)
ggaATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCt < 2:737185/112‑1 (MQ=255)
tGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATta > 2:283377/1‑139 (MQ=255)
tGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATta > 2:51727/1‑139 (MQ=255)
ggTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATtaa < 2:1153432/139‑1 (MQ=255)
tctcTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATtaata < 2:161604/139‑1 (MQ=255)
tctcTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATtaata < 1:815517/139‑1 (MQ=255)
cGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCggg > 2:854297/1‑91 (MQ=255)
cGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCggg < 1:854297/91‑1 (MQ=255)
tGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCggg > 2:249590/1‑88 (MQ=255)
tGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCggg < 1:249590/88‑1 (MQ=255)
tGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGc > 1:298724/1‑91 (MQ=255)
tGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGc < 2:298724/91‑1 (MQ=255)
cTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGgcgc < 1:1099792/79‑1 (MQ=255)
cTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGgcgc > 2:1099792/1‑79 (MQ=255)
cTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCggg < 2:112053/86‑1 (MQ=255)
cTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCggg > 1:112053/1‑86 (MQ=255)
cTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATtaata < 2:1131202/125‑1 (MQ=255)
cTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATtaata > 1:1131202/1‑125 (MQ=255)
tGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCt < 1:283377/139‑1 (MQ=255)
tGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCt < 1:925202/139‑1 (MQ=255)
tGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCt < 1:1127383/139‑1 (MQ=255)
gCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCa < 1:51727/139‑1 (MQ=255)
tcttctTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATC‑GAAACATAAAGGCGCTTTCggg < 2:796173/78‑1 (MQ=255)
tcttctTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATC‑GAAACATAAAGGCGCTTTCggg > 1:796173/1‑78 (MQ=255)
cttcGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTaa < 1:537764/139‑1 (MQ=255)
cGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAg < 1:18196/61‑1 (MQ=255)
cGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAg > 2:18196/1‑61 (MQ=255)
cGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAg < 1:719413/139‑1 (MQ=255)
aCCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCtt > 2:507536/1‑139 (MQ=255)
cGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATaaa > 2:1225357/1‑98 (MQ=255)
cGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATaaa < 1:1225357/98‑1 (MQ=255)
gtgtTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCggg < 1:192244/65‑1 (MQ=255)
gtgtTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCggg > 2:192244/1‑65 (MQ=255)
gtgtTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCgg > 2:323262/1‑64 (MQ=255)
gtgtTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCgg < 1:323262/64‑1 (MQ=255)
gtgtTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGa < 2:806390/107‑1 (MQ=255)
gtgtTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGa > 1:806390/1‑107 (MQ=255)
gtgtTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCta > 1:1011756/1‑139 (MQ=255)
gtgtTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAACTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCta > 1:830629/1‑139 (MQ=255)
tgtTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTtattat < 1:450106/76‑1 (MQ=255)
tgtTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTtattat > 2:450106/1‑76 (MQ=255)
ttCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCt > 2:706419/1‑131 (MQ=255)
ttCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCt < 1:706419/131‑1 (MQ=255)
ttCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAg > 2:648858/1‑139 (MQ=255)
ttCTTTGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAg > 2:1122241/1‑139 (MQ=255)
tttGTGGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCtt > 1:962482/1‑129 (MQ=255)
tgtgGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCt > 1:776771/1‑62 (MQ=255)
tgtgGTGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCt < 2:776771/62‑1 (MQ=255)
tgtgGTGATACGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCCTTCGGGTGCCTTTCTTATTTCCCGTGAAACCCATAAAAATTAATAAGATCTTCTTCTGCTAACTCTTTACAAGATTTCTATAGTTcct > 1:599320/1‑138 (MQ=255)
tgtgGCGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAg > 2:799051/1‑46 (MQ=255)
tgtgGCGATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAg < 1:799051/46‑1 (MQ=255)
ggtgATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTaa > 2:431556/1‑118 (MQ=255)
ggtgATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTaa < 1:431556/118‑1 (MQ=255)
ggtgATCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAGTTCCCGCt > 2:1122272/1‑139 (MQ=255)
aTCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAGTTc > 1:1202954/1‑130 (MQ=255)
aTCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAGTTc < 2:1202954/130‑1 (MQ=255)
aTCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAGTTCCCg > 2:465924/1‑133 (MQ=255)
aTCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAGTTCCCg < 1:465924/133‑1 (MQ=255)
aTCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAGTTCCCGCTCCCt > 1:1306232/1‑139 (MQ=255)
tCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTc < 2:449280/64‑1 (MQ=255)
tCCGCCGTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTc > 1:449280/1‑64 (MQ=255)
cgccgTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAGTTCCCGCTCCCTTCa > 1:803431/1‑139 (MQ=255)
ccgTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCt > 2:419357/1‑99 (MQ=255)
ccgTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCt < 1:419357/99‑1 (MQ=255)
ccgTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAGTTCCCGCTCCCTTCACt > 1:219864/1‑139 (MQ=255)
ccgTTGCTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAGTTCCCGCTCCCTTCACt > 2:1125017/1‑139 (MQ=255)
cTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATtaa < 1:119526/76‑1 (MQ=255)
cTTTAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATtaa > 2:119526/1‑76 (MQ=255)
tttAAAGGACAAATCAGAAACATAAAGGCGCTTTCggg > 1:133151/1‑38 (MQ=255)
tttAAAGGACAAATCAGAAACATAAAGGCGCTTTCggg < 2:133151/38‑1 (MQ=255)
tttAAAGGACAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAGTTCCCGCTCCCTTCACTATTTTTa < 2:238861/139‑1 (MQ=255)
|
CGGTGCCGGCAGTGGCGCGCAGAACGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAGTTCCCGCTCCCTTCACTATTTTTA > NC_000913/3418008‑3418264
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
