Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F1 I2 R1
|
94 |
59.5 |
3027142 |
91.9% |
2781943 |
108.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,222,930 |
G→A |
D100N (GAT→AAT) |
ebgA → |
evolved beta‑D‑galactosidase, alpha subunit |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,222,930 | 0 | G | A | 100.0%
| 230.4
/ NA
| 67 | D100N (GAT→AAT) | ebgA | evolved beta‑D‑galactosidase, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (36/31); total (36/31) |
ATCCGCTGCAAGTACCAGAAGCCTTCACCTCTGAGTTAATGGCTGACTGGGGGCATATTACCGTCCCCGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCGATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACGGCGTCGAAACCTATTTTGAAGTCTATGTTAA > NC_000913/3222796‑3223063
|
aTCCGCTGCAAGTACCAGAAGCCTTCACCTCTGAGTTAATGGCTGACTGGGGGCATATTACCGTCCCCGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAAtgt < 2:1043546/139‑1 (MQ=255)
tACCAGAAGCCTTCACCTCTGAGTTAATGGCTGACTGGGGGCATATTACCGTCCCCGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTccc > 2:992160/1‑139 (MQ=255)
aCCAGAAGCCTTCACCTCTGAGTTAATGGCTGACTGGGGGCATATTACCGTCCCCGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTcccc > 2:112585/1‑139 (MQ=255)
aGCCTTCACCTCTGAGTTAATGGCTGACTGGGGGCATATTACCGTCCCCGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGAt < 1:531763/139‑1 (MQ=255)
cTTCACCTCTGAGTTAATGGCTGACTGGGGGCATATTACCGTCCCCGCCATGCGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAAc > 1:1017673/1‑139 (MQ=255)
ttCACCTCTGAGTTAATGGCTGACTGGGGGCATATTACCGTCCCCGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAAcc > 2:578610/1‑139 (MQ=255)
ccTCTGAGTTAATGGCTGACTGGGGGCATATTACCGTCCCCGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAAc < 1:1048785/139‑1 (MQ=255)
tGAGTTAATGGCTGACTGGGGGCATATTACCGTCCCCGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGt > 1:905761/1‑139 (MQ=255)
aTGGCTGACTGGGGGCATATTACCGTCCCCGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGTCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATc > 1:751511/1‑139 (MQ=255)
aTGGCTGACTGGGGGCATATTACCGTCCCCGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGc > 2:434411/1‑134 (MQ=255)
aTGGCTGACTGGGGGCATATTACCGTCCCCGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGc < 1:434411/134‑1 (MQ=255)
cTGACTGGGGGCATATTACCGTCCCCGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACg < 1:112585/139‑1 (MQ=255)
cTGACTGGGGGCATATTACCGTCCCCGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACg < 1:646404/139‑1 (MQ=255)
gACTGGGGGCATATTACCGTCCCCGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTa > 2:1471934/1‑139 (MQ=255)
aCTGGGGGCATATTACCGTCCCCGCCATGTGTCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCg > 2:1262398/1‑111 (MQ=255)
aCTGGGGGCATATTACCGTCCCCGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCg < 1:1262398/111‑1 (MQ=255)
aCTGGGGGCATATTACCGTCCCCGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTAt > 2:415198/1‑139 (MQ=255)
cGTCCCCGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCa < 1:1428158/117‑1 (MQ=255)
cGTCCCCGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCa > 2:1428158/1‑117 (MQ=255)
cccGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTccc > 2:1375872/1‑86 (MQ=255)
cccGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTccc < 1:1375872/86‑1 (MQ=255)
ccGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGTCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGATGGCTg < 2:751511/139‑1 (MQ=255)
ccGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTg > 2:1172041/1‑139 (MQ=255)
cGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTg < 1:1251426/138‑1 (MQ=255)
cGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTg > 2:1251426/1‑138 (MQ=255)
gCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCTATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGc > 1:738105/1‑139 (MQ=255)
gCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCg < 1:802659/100‑1 (MQ=255)
gCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCg > 2:802659/1‑100 (MQ=255)
gCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTgg < 1:600831/138‑1 (MQ=255)
gCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTgg > 2:600831/1‑138 (MQ=255)
gCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGc > 1:833406/1‑139 (MQ=255)
tgtgGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAggg < 1:415198/139‑1 (MQ=255)
tgGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTAt > 1:1250838/1‑102 (MQ=255)
tgGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTAt < 2:1250838/102‑1 (MQ=255)
tCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGAtt > 2:128736/1‑139 (MQ=255)
aCGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGttt > 1:1149701/1‑56 (MQ=255)
aCGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGttt < 2:1149701/56‑1 (MQ=255)
cGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACg > 1:1097833/1‑130 (MQ=255)
cGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACg < 2:1097833/130‑1 (MQ=255)
cGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTaaa > 1:1374332/1‑139 (MQ=255)
cTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACg > 2:232565/1‑139 (MQ=255)
cTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACg < 2:1017673/139‑1 (MQ=255)
taCCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACGGCGTCGaa < 1:992160/139‑1 (MQ=255)
taCCGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACGGCGTCGaa > 2:1101162/1‑139 (MQ=255)
ccGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACGGCGTCGAAAc < 1:128736/139‑1 (MQ=255)
ccGACGAAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACGGCGTCGAAAc < 1:232565/139‑1 (MQ=255)
cgacgaAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACGGCGTCGAAAcc > 1:1373953/1‑139 (MQ=255)
acgaAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAAcc > 1:546494/1‑56 (MQ=255)
acgaAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAAcc < 2:546494/56‑1 (MQ=255)
acgaAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCa > 1:590903/1‑78 (MQ=255)
acgaAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCa < 2:590903/78‑1 (MQ=255)
acgaAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACGGCGTCGaa < 2:1442330/134‑1 (MQ=255)
acgaAGGTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACGGCGTCGaa > 1:1442330/1‑134 (MQ=255)
ggTTTTCCGTTCCCCATCAATGTGCCGTTTGTcccc < 2:151073/36‑1 (MQ=255)
ggTTTTCCGTTCCCCATCAATGTGCCGTTTGTcccc > 1:151073/1‑36 (MQ=255)
ggTTTTCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACGGCGTCGAAACCTATTTTg > 2:1061491/1‑139 (MQ=255)
ttttCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACGGCGTCGAAACCTATTTTGaa < 2:1374332/139‑1 (MQ=255)
ttCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACGGCGTCGAAACCTATTTTGAAGt > 2:396740/1‑139 (MQ=255)
tCCGTTCCCCATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTTCCTATCTACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAACTTTGACGGCGTCGACACCTATTTTGTAGTc > 2:571972/1‑139 (MQ=255)
ccccATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAggg < 2:76168/84‑1 (MQ=255)
ccccATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAggg > 1:76168/1‑84 (MQ=255)
ccccATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACGGCGTCGAAACCTAttt > 1:1155095/1‑126 (MQ=255)
ccccATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACGGCGTCGAAACCTAttt < 2:1155095/126‑1 (MQ=255)
ccccATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACGGCGTCGAAACCTATTTTGAAGTCTATGtt < 1:1101162/139‑1 (MQ=255)
ccccATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACGGCGTCGAAACCTATTTTGAAGTCTATGtt > 2:7903/1‑139 (MQ=255)
ccATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACGGCGTCGAAACCTATTTTGAAGTCTATGTTaa < 1:1471934/139‑1 (MQ=255)
ccATCAATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACGGCGTCGAAACCTATTTTGAAGTCTATGTTaa < 2:905761/139‑1 (MQ=255)
|
ATCCGCTGCAAGTACCAGAAGCCTTCACCTCTGAGTTAATGGCTGACTGGGGGCATATTACCGTCCCCGCCATGTGGCAAATGGAAGGTCACGGCAAACTGCAATATACCGACGAAGGTTTTCCGTTCCCCATCGATGTGCCGTTTGTCCCCAGCGATAACCCAACCGGTGCCTATCAACGTATTTTCACCCTCAGCGACGGCTGGCAGGGTAAACAGACGCTGATTAAATTTGACGGCGTCGAAACCTATTTTGAAGTCTATGTTAA > NC_000913/3222796‑3223063
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A