Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F1 I2 R1
|
69 |
53.0 |
2252012 |
96.1% |
2164183 |
115.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,036,909 |
T→C |
Q415R (CAG→CGG) |
yedV ← |
putative sensory kinase in two‑component regulatory system with YedW |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,036,909 | 0 | T | C | 97.9%
| 344.3
/ ‑2.4
| 93 | Q415R (CAG→CGG) | yedV | putative sensory kinase in two‑component regulatory system with YedW |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (49/42); total (50/43) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.37e-01 |
TACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATG > NC_000913/2036779‑2037042
|
tACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACg > 1:149406/1‑139 (MQ=255)
tACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACg > 1:964533/1‑139 (MQ=255)
aCTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACgg > 1:806824/1‑139 (MQ=255)
ccTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGAcgc > 1:366628/1‑139 (MQ=255)
cTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGAcgcg > 2:814025/1‑139 (MQ=255)
cTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGAcgcg > 2:288056/1‑139 (MQ=255)
aTGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGaa > 2:214904/1‑139 (MQ=255)
aTGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGaa > 1:869956/1‑139 (MQ=255)
aTTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTAtct > 2:1067591/1‑139 (MQ=255)
tttGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCg < 1:1122079/139‑1 (MQ=255)
tttGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCg > 2:197593/1‑139 (MQ=255)
tGCGGTAACGTAATGCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGTCAATCGCTTTGACTAAAGAAAGGCCTCGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGcc > 1:682593/1‑139 (MQ=255)
tGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGcc > 1:558283/1‑139 (MQ=255)
ggTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCaaa < 2:806824/139‑1 (MQ=255)
tAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAAt < 1:947281/139‑1 (MQ=255)
aTCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGa > 2:783746/1‑139 (MQ=255)
cGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAaga < 2:869956/139‑1 (MQ=255)
aaCACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGtt > 2:731065/1‑139 (MQ=255)
aaCACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGtt > 1:248083/1‑139 (MQ=255)
aTTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCa > 2:338919/1‑139 (MQ=255)
tATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCGAAATCTACGGAAGAGTTTTTCAgg < 1:686527/139‑1 (MQ=255)
tATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAgg < 1:353038/139‑1 (MQ=255)
aTGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGc < 1:814025/139‑1 (MQ=255)
ttGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTaa > 2:459343/1‑139 (MQ=255)
aGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGcc < 1:900884/99‑1 (MQ=255)
aGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGcc > 2:900884/1‑99 (MQ=255)
gTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGtt > 1:803890/1‑139 (MQ=255)
tGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTc > 1:862393/1‑139 (MQ=255)
tGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTc < 2:580692/139‑1 (MQ=255)
aTACGTAGCACTTCCCCCATGCAATTCGGCAATCTCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCa > 1:585524/1‑139 (MQ=255)
tACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAg > 1:966211/1‑139 (MQ=255)
aCGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAgg < 1:926717/139‑1 (MQ=255)
cGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAggg < 2:366628/139‑1 (MQ=255)
gTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGc > 1:316278/1‑139 (MQ=255)
tAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGAcg < 2:622226/73‑1 (MQ=255)
tAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGAcg > 1:622226/1‑73 (MQ=255)
aGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAaga < 1:729383/104‑1 (MQ=255)
aGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAaga > 2:729383/1‑104 (MQ=255)
cACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAaga < 1:38621/102‑1 (MQ=255)
cACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAaga > 2:38621/1‑102 (MQ=255)
cACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGc > 1:383638/1‑139 (MQ=255)
cACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGc < 1:1124994/139‑1 (MQ=255)
cACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGc > 2:944769/1‑139 (MQ=255)
cTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGa > 2:1072521/1‑139 (MQ=255)
cccccATGCAATTCGGCAATCTCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGatat < 2:585524/139‑1 (MQ=255)
cccccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTcc > 1:305114/1‑77 (MQ=255)
cccccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTcc < 2:305114/77‑1 (MQ=255)
cccccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCa > 2:339983/1‑83 (MQ=255)
cccccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCa < 1:339983/83‑1 (MQ=255)
cccccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAgg < 1:273696/107‑1 (MQ=255)
cccccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAgg > 2:273696/1‑107 (MQ=255)
cccccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGatat < 1:70950/139‑1 (MQ=255)
cccccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGatat < 1:288056/139‑1 (MQ=255)
cccccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGatat < 2:383638/139‑1 (MQ=255)
cccccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGatat > 2:143693/1‑139 (MQ=255)
cccccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGatat < 2:316278/139‑1 (MQ=255)
ccccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATc < 1:214904/139‑1 (MQ=255)
ccccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATc < 2:149406/139‑1 (MQ=255)
ccccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATc < 1:459343/139‑1 (MQ=255)
ccccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATc < 1:143693/139‑1 (MQ=255)
ccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATc < 2:294313/137‑1 (MQ=255)
ccATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATc > 1:294313/1‑137 (MQ=255)
aTGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTgatatcgc < 2:503146/134‑8 (MQ=255)
aTGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTgatatcgc > 1:503146/1‑127 (MQ=255)
tGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAatat > 1:931008/1‑139 (MQ=255)
tGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAatat < 2:966211/139‑1 (MQ=255)
cAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAAtttt > 2:757701/1‑111 (MQ=255)
cAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAAtttt < 1:757701/111‑1 (MQ=255)
cAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATc > 1:734550/1‑132 (MQ=255)
cAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATc < 2:734550/132‑1 (MQ=255)
ttCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTTAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATc < 1:667730/129‑1 (MQ=255)
ttCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTTAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATc > 2:667730/1‑129 (MQ=255)
ttCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGa < 2:682593/139‑1 (MQ=255)
ttCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGa > 2:313543/1‑139 (MQ=255)
ttCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGa > 1:1014412/1‑139 (MQ=255)
ggCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAg < 2:964533/139‑1 (MQ=255)
aaTCGCTTTGACTAAAGAAAGGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTg < 1:313543/139‑1 (MQ=255)
agaaagGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGaaaa < 1:783746/139‑1 (MQ=255)
aaagGCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACt < 2:248083/139‑1 (MQ=255)
ggCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCa > 1:35535/1‑46 (MQ=255)
ggCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCa < 2:35535/46‑1 (MQ=255)
ggCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTTAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTaa < 2:793316/111‑1 (MQ=255)
ggCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAAtttt < 2:397528/82‑1 (MQ=255)
ggCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAAtttt > 1:397528/1‑82 (MQ=255)
ggCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGatat > 1:996720/1‑102 (MQ=255)
ggCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGatat < 2:996720/102‑1 (MQ=255)
ggCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTaa > 1:793316/1‑111 (MQ=255)
ggCCTAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGt > 1:743932/1‑139 (MQ=255)
tAGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTtata > 1:386355/1‑139 (MQ=255)
aGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATc < 2:276223/98‑1 (MQ=255)
aGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATc > 1:276223/1‑98 (MQ=255)
aGTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTatat > 2:84252/1‑139 (MQ=255)
gTCCCCGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATg > 1:475210/1‑139 (MQ=255)
|
TACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGGAAGAGTTTTTCAGGCTCATTAATTTTCGTTCCAGGGCTGGCGATATCAATATTAAGATAGCTGTTGGTATCAAGAAAACTGGTTATATG > NC_000913/2036779‑2037042
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
