Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I2 R1
|
78 |
65.3 |
3016648 |
94.6% |
2853749 |
111.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,189,993 |
A→G |
E38G (GAG→GGG) |
yqiH → |
putative periplasmic pilin chaperone |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,189,993 | 0 | A | G | 100.0%
| 324.7
/ NA
| 84 | E38G (GAG→GGG) | yqiH | putative periplasmic pilin chaperone |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (46/38); total (46/38) |
AATTAATTCAGGATGAAACTAATGCGCTACTTAAATACAAAGAATATCATTGCAGCAGGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGAGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGTGCGT > NC_000913/3189860‑3190126
|
aattaattCAGGATGAAACTAATGCGCTACTTAAATACAAAGAATATCATTGCAGCAGGAGTATTACTCTCCTGTAGGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAg > 2:1080023/1‑139 (MQ=255)
ggATGAAACTAATGCGCTACTTAAATACAAAGAATATCATTGCAGCAGGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGa < 1:1000821/139‑1 (MQ=255)
aaCTAATGCGCTACTTAAATACAAAGAATATCATTGCAGCAGGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCAtt > 2:1000215/1‑139 (MQ=255)
tAATGCGCTACTTAAATACAAAGAATATCATTGCAGCAGGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTaaa < 2:335338/139‑1 (MQ=255)
cTTAAATACAAAGAATATCATTGCAGCAGGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAAt > 2:937492/1‑139 (MQ=255)
aaGAATATCATTGCAGCAGGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTaaaa > 1:328856/1‑139 (MQ=255)
aaGAATATCATTGCAGCAGGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTaaaa > 1:1224460/1‑139 (MQ=255)
aaGAATATCATTGCAGCAGGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTaaaa > 1:1271278/1‑139 (MQ=255)
aaGAATATCATTGCAGCAGGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTaaaa > 2:725196/1‑139 (MQ=255)
aGAATATCATTGCAGCAGGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTaaaaa < 1:1091803/139‑1 (MQ=255)
acaatGCAGCAAGAATATTAATCTCCTTTATGAGCAGCATTGGCTTGGGTTCCATTAACCCGGATCGTTCCCCTAATAAAATTAATGGGTCAAGTAAAGGCGAAACAATAAAACCTACCAATCAAAGTAAAAACCTGcc < 2:264555/135‑1 (MQ=255)
gcagcaGGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATc < 1:1068793/139‑1 (MQ=255)
cagcagGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCt > 2:36633/1‑139 (MQ=255)
cagcagGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCt > 2:669531/1‑139 (MQ=255)
cagcagGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCt > 1:883574/1‑139 (MQ=255)
ggAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGccc < 1:669531/139‑1 (MQ=255)
tATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAAc < 1:1046431/139‑1 (MQ=255)
ctctCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGa < 1:725196/139‑1 (MQ=255)
tctcCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGAt < 1:1000215/139‑1 (MQ=255)
ctcCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATa > 2:842552/1‑139 (MQ=255)
tcCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATag > 2:1014058/1‑139 (MQ=255)
cTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGa < 1:762903/134‑1 (MQ=255)
cTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGa > 2:762903/1‑134 (MQ=255)
cTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATagaa > 2:467275/1‑139 (MQ=255)
tATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCg < 1:110027/74‑1 (MQ=255)
tATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCg > 2:110027/1‑74 (MQ=255)
tATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGcc > 2:1483846/1‑121 (MQ=255)
tATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGcc < 1:1483846/121‑1 (MQ=255)
tATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGa > 2:1178116/1‑131 (MQ=255)
tATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGa < 1:1178116/131‑1 (MQ=255)
tATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGAt > 1:1378895/1‑139 (MQ=255)
tATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGAt > 1:33572/1‑139 (MQ=255)
tGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATAc > 1:704922/1‑139 (MQ=255)
gcagcaTTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGa < 2:260527/126‑1 (MQ=255)
gcagcaTTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGa > 1:260527/1‑126 (MQ=255)
gcagcaTTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGaa < 2:1271278/139‑1 (MQ=255)
gcagcaTTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGaa < 1:1014058/139‑1 (MQ=255)
gcagcaTTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGaa > 1:1347269/1‑139 (MQ=255)
agcaTTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAg > 1:1331299/1‑139 (MQ=255)
agcaTTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAg > 1:1426455/1‑139 (MQ=255)
agcaTTGCCTGGGGAGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCAGTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAg > 1:916747/1‑139 (MQ=255)
caTTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGa > 2:1471625/1‑122 (MQ=255)
caTTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGa < 1:1471625/122‑1 (MQ=255)
ggTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATc > 1:1367409/1‑76 (MQ=255)
ggTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATc < 2:1367409/76‑1 (MQ=255)
ggTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACTTGcc < 1:1460925/92‑1 (MQ=255)
ggTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACTTGcc > 2:1460925/1‑92 (MQ=255)
ggTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATcgc > 1:1211822/1‑139 (MQ=255)
gTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATcgcg < 2:1331299/139‑1 (MQ=255)
tGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATc < 1:398784/95‑1 (MQ=255)
tGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATc > 2:398784/1‑95 (MQ=255)
ccATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGa > 2:623259/1‑139 (MQ=255)
ccATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGa > 1:900519/1‑139 (MQ=255)
ccATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGa > 1:1340618/1‑139 (MQ=255)
ccATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGa > 2:82995/1‑139 (MQ=255)
ccATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGa > 2:1108097/1‑139 (MQ=255)
catcatCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCa < 2:959674/72‑1 (MQ=255)
catcatCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCa > 1:959674/1‑72 (MQ=255)
catcatCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATc < 2:1300224/92‑1 (MQ=255)
catcatCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATc > 1:1300224/1‑92 (MQ=255)
catcatCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGAc > 2:1016326/1‑139 (MQ=255)
tcCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTAt < 2:1347269/139‑1 (MQ=255)
gATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCa < 2:1378895/139‑1 (MQ=255)
aTCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCAc < 2:1211822/139‑1 (MQ=255)
gTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGt < 2:328856/139‑1 (MQ=255)
gTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCAAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGt < 2:33572/139‑1 (MQ=255)
tACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAAc < 2:1311558/87‑1 (MQ=255)
tACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAAc > 1:1311558/1‑87 (MQ=255)
tACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGtt > 1:340930/1‑139 (MQ=255)
tACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGAGACTTTATTGTCACTGtt > 1:1013088/1‑139 (MQ=255)
aCCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGcc > 2:833701/1‑81 (MQ=255)
aCCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGcc < 1:833701/81‑1 (MQ=255)
aCCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCaaa > 1:1236690/1‑85 (MQ=255)
aCCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCaaa < 2:1236690/85‑1 (MQ=255)
aCCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTtc > 1:69181/1‑139 (MQ=255)
tATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCa > 1:1409034/1‑139 (MQ=255)
aTCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCaa > 1:10343/1‑139 (MQ=255)
tAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGt < 1:1016326/139‑1 (MQ=255)
tAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGt < 1:36633/139‑1 (MQ=255)
tAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGt < 1:937492/139‑1 (MQ=255)
tAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGt < 2:900519/139‑1 (MQ=255)
tAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGt < 2:1426455/139‑1 (MQ=255)
tAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGt < 2:1409034/139‑1 (MQ=255)
tAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGt < 2:1340618/139‑1 (MQ=255)
atgaatggGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTaaaaa < 1:867883/53‑1 (MQ=255)
atgaatggGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTaaaaa > 2:867883/1‑53 (MQ=255)
gaatggGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGTGCGt < 2:1224460/139‑1 (MQ=255)
aatggGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACa < 1:292636/72‑1 (MQ=255)
aatggGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACa > 2:292636/1‑72 (MQ=255)
aatggGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATa > 1:28784/1‑78 (MQ=255)
aatggGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATa < 2:28784/78‑1 (MQ=255)
atggGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCAc > 2:1097792/1‑118 (MQ=255)
atggGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCAc < 1:1097792/118‑1 (MQ=255)
|
AATTAATTCAGGATGAAACTAATGCGCTACTTAAATACAAAGAATATCATTGCAGCAGGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGAGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAATGGTGCGT > NC_000913/3189860‑3190126
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
