Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F1 I2 R1	78	65.3	3016648	94.6%	2853749	111.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,485,541	C→T	G93D (GGT→GAT)	yhfA ←	OsmC family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,485,541	0	C	T	100.0%	309.8 / NA	88	G93D (GGT→GAT)	yhfA	OsmC family protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (42/46); total (42/46)

AGTTAAGTCACGCGGCAACCACTTCATACGAGTGAGTAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGACCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCTTTTTGCAGGATCGAAACCACATCGATGGCA  >  NC_000913/3485407‑3485675

aGTTAAGTCACGCGGCAACCACTTCATACGAGTGAGTAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGt                                                                                                                                    <  2:249160/139‑1 (MQ=255)

  ttAAGTCACGCGGCAACCACTTCATACGAGTGAGTAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCTATCGGTGa                                                                                                                                  <  1:981207/139‑1 (MQ=255)

  ttAAGTCACGCGGCAACCACTTCATACGAGTGAGTAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGa                                                                                                                                  <  2:687705/139‑1 (MQ=255)

  ttAAGTCACGCGGCAACCACTTCATACGAGTGAGTAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGa                                                                                                                                  <  1:1383900/139‑1 (MQ=255)

       tCACGCGGCAACCACTTCATACGAGTGAGTAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATa                                                                                                                             >  2:1099946/1‑139 (MQ=255)

         aCGCGGCAACCACTTCATACGAGTGAGTAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATaaa                                                                                                                           <  2:1231879/139‑1 (MQ=255)

           gcgGCAACCACTTCATACGAGTGAGTAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAAt                                                                                                                         >  2:1250393/1‑139 (MQ=255)

           gcgGCAACCACTTCATACGAGTGAGTAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAAt                                                                                                                         <  2:460869/139‑1 (MQ=255)

           gcgGCAACCACTTCATACGAGTGAGTAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAAt                                                                                                                         <  2:566491/139‑1 (MQ=255)

           gcgGCAACCACTTCATACGAGTGAGTAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAAt                                                                                                                         <  1:1448078/139‑1 (MQ=255)

            cgGCAACCACTTCATACGAGTGAGTAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATg                                                                                                                        >  2:219606/1‑139 (MQ=255)

            cgGCAACCACTTCATACGAGTGAGTAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATg                                                                                                                        <  1:219606/139‑1 (MQ=255)

            cgGCAACCACTTCATACGAGTGAGTAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATg                                                                                                                        >  2:1413082/1‑139 (MQ=255)

                    aCTTCATACGAGTGAGTAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTaa                                                                                                                <  2:794591/139‑1 (MQ=255)

                    aCTTCATACGAGTGAGTAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTaa                                                                                                                <  1:197423/139‑1 (MQ=255)

                       tCATACGAGTGAGTAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAAtgt                                                                                                             >  2:765301/1‑139 (MQ=255)

                        cATACGAGTGAGTAATATTCACCGCTTTTTCCAGCATCAACGCCACTGCACAATACTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAAtgtg                                                                                                            >  2:823969/1‑139 (MQ=255)

                                  agtAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGa                                                                                                                    <  1:168292/121‑1 (MQ=255)

                                  agtAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGa                                                                                                                    >  2:168292/1‑121 (MQ=255)

                                  agtAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAgg                                                                                                  >  1:1450083/1‑139 (MQ=255)

                                    tAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCg                                                                                                >  1:229321/1‑139 (MQ=255)

                                            aCCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTaa                                                                                                                >  1:322220/1‑115 (MQ=255)

                                            aCCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTaa                                                                                                                <  2:322220/115‑1 (MQ=255)

                                            aCCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCct                                                                                        >  2:272919/1‑139 (MQ=255)

                                              cGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCctct                                                                                      >  2:1154792/1‑139 (MQ=255)

                                                   tttCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTctcg                                                                                 >  2:349279/1‑139 (MQ=255)

                                                   tttCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTcgcg                                                                                 <  1:43697/139‑1 (MQ=255)

                                                        aGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGtt                                                                            <  1:272919/139‑1 (MQ=255)

                                                          cATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCa                                                                          <  2:359597/139‑1 (MQ=255)

                                                          cATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCa                                                                          >  2:1283201/1‑139 (MQ=255)

                                                               aCGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGt                                                                     <  2:392175/139‑1 (MQ=255)

                                                               aCGCCACTGAACAATACTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGt                                                                     <  1:823969/139‑1 (MQ=255)

                                                                        aaCAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTAc                                                            >  2:921531/1‑139 (MQ=255)

                                                                             tatTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCgtggtg                                                                                           >  2:1001511/1‑103 (MQ=255)

                                                                             tatTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCgtggtg                                                                                           <  1:1001511/103‑1 (MQ=255)

                                                                               tttCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACaa                                                     <  2:49642/139‑1 (MQ=255)

                                                                                ttCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTc                                                                    <  1:388944/123‑1 (MQ=255)

                                                                                ttCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTc                                                                    >  2:388944/1‑123 (MQ=255)

                                                                                 tctcGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATGAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATc                                                   <  1:1413082/139‑1 (MQ=255)

                                                                                  ctcGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATa                                                                                                                             <  2:959583/64‑1 (MQ=255)

                                                                                  ctcGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCg                                                  >  1:101803/1‑139 (MQ=255)

                                                                                  ctcGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGCGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCg                                                  >  1:296797/1‑139 (MQ=255)

                                                                                  ctcGGCAGAGAGATCAACCGCACGCGCAACCGCTGCATCTTTCAGGTAGCGATCGGTGACGAtg                                                                                                                             >  1:959583/1‑63 (MQ=255)

                                                                                    cGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTaa                                                                                                                >  1:518611/1‑75 (MQ=255)

                                                                                    cGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTaa                                                                                                                >  1:812457/1‑75 (MQ=255)

                                                                                    cGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTaa                                                                                                                <  2:812457/75‑1 (MQ=255)

                                                                                    cGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTaa                                                                                                                <  2:518611/75‑1 (MQ=255)

                                                                                       cAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGt                                                                                                                                    >  1:603457/1‑52 (MQ=255)

                                                                                       cAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGt                                                                                                                                    <  2:603457/52‑1 (MQ=255)

                                                                                       cAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATa                                                                                                                             <  1:1208545/59‑1 (MQ=255)

                                                                                       cAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATa                                                                                                                             >  2:1208545/1‑59 (MQ=255)

                                                                                       cAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTcgcg                                                                                 <  1:231892/103‑1 (MQ=255)

                                                                                       cAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTcgcg                                                                                 >  2:231892/1‑103 (MQ=255)

                                                                                                cAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACg                                    <  1:1283201/139‑1 (MQ=255)

                                                                                                 aaCCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGCGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGc                                   <  2:296797/139‑1 (MQ=255)

                                                                                                  aCCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGcc                                  <  1:805705/139‑1 (MQ=255)

                                                                                                   ccGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAgg                                                                                                  >  2:650444/1‑74 (MQ=255)

                                                                                                   ccGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAgg                                                                                                  <  1:650444/74‑1 (MQ=255)

                                                                                                     gCACGCGCGACCGGGGCGGCTTTCAGGTCGCTATCGGTGACGATAAAGTGAAGATTAATGTGCGTAAAAAGGCGTGGTACCTCGTGGCGGCGTTCAGGGGTCAGTTTGACGTCACAAGCGGAAACTTCCTGATGCCCtt                               >  2:1361867/1‑139 (MQ=255)

                                                                                                      cACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCaa                                                                  <  2:603130/103‑1 (MQ=255)

                                                                                                      cACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCaa                                                                  >  1:603130/1‑103 (MQ=255)

                                                                                                      cACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCttt                              >  2:1381198/1‑139 (MQ=255)

                                                                                                      cACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCttt                              >  1:114943/1‑139 (MQ=255)

                                                                                                      cACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCttt                              >  2:1114524/1‑139 (MQ=255)

                                                                                                      cACGCGCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCAGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCttt                              >  2:504784/1‑139 (MQ=255)

                                                                                                        cgcgCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCg                                                                                                >  2:312731/1‑71 (MQ=255)

                                                                                                        cgcgCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCg                                                                                                <  1:312731/71‑1 (MQ=255)

                                                                                                        cgcgCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGa                                                 >  2:182933/1‑118 (MQ=255)

                                                                                                        cgcgCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGa                                                 <  1:182933/118‑1 (MQ=255)

                                                                                                        cgcgCAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCttttt                            >  2:654744/1‑139 (MQ=255)

                                                                                                         gcgcAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGAGAAAATGCAGATTAATGTGCGTAAACACGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCTTTTTg                           <  1:916008/139‑1 (MQ=255)

                                                                                                           gcAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCag                                                                         <  1:763627/91‑1 (MQ=255)

                                                                                                           gcAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCag                                                                         >  2:763627/1‑91 (MQ=255)

                                                                                                           gcAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCTTTTTGCa                         <  2:229321/139‑1 (MQ=255)

                                                                                                           gcAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCTTTTTGCa                         <  1:654744/139‑1 (MQ=255)

                                                                                                           gcAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCTTTTTGCa                         <  1:1114524/139‑1 (MQ=255)

                                                                                                           gcAACCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCTTTTTGCa                         <  2:114943/139‑1 (MQ=255)

                                                                                                              aCCGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCTTTTTGCAGGa                      >  2:1263551/1‑139 (MQ=255)

                                                                                                               ccGCTGCGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCTTTTTGCAGGAt                     <  1:1263551/139‑1 (MQ=255)

                                                                                                                     cGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAAtg                                                                                                              >  1:183055/1‑44 (MQ=255)

                                                                                                                     cGTCTTTCAGGTCGCGATCGGTGACGATAAAATGCAGATTAAtg                                                                                                              <  2:183055/44‑1 (MQ=255)

                                                                                                                         tttCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCTTTTTGCAGGATCGAAACcaca           >  2:379780/1‑139 (MQ=255)

                                                                                                                           tCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCagag                                                                       >  2:698027/1‑77 (MQ=255)

                                                                                                                           tCAGGTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCagag                                                                       <  1:698027/77‑1 (MQ=255)

                                                                                                                              ggTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCTTTTTGCAGGATCGAAACCACATCGAt      <  1:1250393/139‑1 (MQ=255)

                                                                                                                               gTCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCTTTTTGCAGGATCGAAACCACATCGATg     >  1:145647/1‑139 (MQ=255)

                                                                                                                                tCGCGATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCTTTTTGCAGGATCGAAACCACATCGATgg    >  2:147983/1‑139 (MQ=255)

                                                                                                                                  gcgATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCTTTTTGCAGGATCGAAACCACATCGATGGCa  <  1:765301/139‑1 (MQ=255)

                                                                                                                                  gcgATCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCTTTTTGCAGGATCGAAACCACATCGATGGCa  >  1:894139/1‑139 (MQ=255)

AGTTAAGTCACGCGGCAACCACTTCATACGAGTGAGTAATATTCACCGCTTTTTCCAGCATCAACGCCACTGAACAATATTTCTCGGCAGAGAGATCAACCGCACGCGCAACCGCTGCGTCTTTCAGGTCGCGACCGGTGACGATAAAATGCAGATTAATGTGCGTAAACAGGCGTGGTGCCTCTTCGCGGCGTTCAGAGGTCAATTTTACTTCACAATCGACCACATCCTGACGCCCTTTTTGCAGGATCGAAACCACATCGATGGCA  >  NC_000913/3485407‑3485675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A