Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I2 R1
|
78 |
65.3 |
3016648 |
94.6% |
2853749 |
111.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,607,418 |
C→T |
A323V (GCC→GTC) |
zntA → |
zinc, cobalt and lead efflux system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,607,418 | 0 | C | T | 100.0%
| 152.6
/ NA
| 44 | A323V (GCC→GTC) | zntA | zinc, cobalt and lead efflux system |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (24/20); total (24/20) |
TCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGCCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGCGGTTTATCGACCGTTTCAGCCGTATCTATACGCCCGCGATTATGGCCGTCGCTCTGCTGGTGACGCTGGT > NC_000913/3607326‑3607553
|
tCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGTTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAagag > 2:602321/1‑139 (MQ=255)
gAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCACCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTcgcg < 1:261324/139‑1 (MQ=255)
gcgcgcAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCg > 1:181126/1‑99 (MQ=255)
gcgcgcAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCg < 2:181126/99‑1 (MQ=255)
cgcAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTccc > 1:95422/1‑139 (MQ=255)
ggCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGc < 1:549666/139‑1 (MQ=255)
gTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGCGGTTTATCg < 1:170547/139‑1 (MQ=255)
cccTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCg < 1:1431585/78‑1 (MQ=255)
cccTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCg > 2:1431585/1‑78 (MQ=255)
gctgGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGCAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGc < 1:998295/124‑1 (MQ=255)
gctgGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCAtt > 2:467403/1‑120 (MQ=255)
gctgGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCAtt < 1:467403/120‑1 (MQ=255)
gctgGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGc > 2:998295/1‑124 (MQ=255)
gTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGCGGTTTATCGACCGTTTCAg < 1:1026911/139‑1 (MQ=255)
tGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTcgcg < 2:495504/107‑1 (MQ=255)
tGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTcgcg > 1:495504/1‑107 (MQ=255)
gatgtgtataagaGACAGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGCGGTTTATCGACCGTTTCAGc < 2:920861/127‑1 (MQ=255)
gCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGCGGTTTATCGACCGTTTCAGcc < 1:602321/139‑1 (MQ=255)
tCTGGTGACGTTGGAAGTGCTGTCAGACCCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTcgcg > 2:899042/1‑89 (MQ=255)
tCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTcgcg > 2:935745/1‑89 (MQ=255)
tCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTcgcg < 1:899042/89‑1 (MQ=255)
tCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTcgcg < 1:935745/89‑1 (MQ=255)
tCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGCGGTTTATCGACCGTTTCAGCCGTATCTATACGCCcgcg > 1:1494274/1‑139 (MQ=255)
tCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGCGGTTTATCGACCATTTCAGCCGTATCTATACGCCcgcg > 2:917328/1‑139 (MQ=255)
cTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGa < 2:607674/58‑1 (MQ=255)
cTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGa > 1:607674/1‑58 (MQ=255)
cTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGTGGTTTATCGACCGTTTCAg < 1:1004516/119‑1 (MQ=255)
cTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGCGGTTTATCGACCGTTTCAg > 2:1004516/1‑119 (MQ=255)
cTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGCGGTTTATCGACCGTTTCAGCCGTATCTATACGCCCGCGa > 1:259978/1‑139 (MQ=255)
cTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGCGGTTTATCGACCGTTTCAGCCGTATCTATACGCCCGCGa > 2:216368/1‑139 (MQ=255)
tGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGa < 1:334931/97‑1 (MQ=255)
tGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGa > 2:334931/1‑97 (MQ=255)
ggTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAaga > 2:269235/1‑78 (MQ=255)
ggTGACGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAaga < 1:269235/78‑1 (MQ=255)
cGTTGGAAGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGCGGTTTATCGACCGTTTCAGCCGTATCTATACGCCCGCGATTATGGc > 1:488706/1‑139 (MQ=255)
aaGTGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGCGGTTTATCGACCGTTTCAGCCGTATCTATACGCCCGCGATTATGGCCGTCGc > 2:772736/1‑139 (MQ=255)
tGCTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGCGGTTTATCGACCGTTTCAGCCGTATCTATACGCCCGCGATTATGGCCGTCGctct < 1:772736/139‑1 (MQ=255)
cTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAGCTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGc < 2:41340/82‑1 (MQ=255)
cTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGc > 1:41340/1‑82 (MQ=255)
cTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGCGGTTTATCGACCGTTTCAGCCGt > 2:698681/1‑105 (MQ=255)
cTGTCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGCGGTTTATCGACCGTTTCAGCCGt < 1:698681/105‑1 (MQ=255)
tCAGAACCGGGAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGCGGTTTATCGACCGTTTCAGCCGTATCTATACGCCCGCGATTATGGCCGTCGCTCTGCTgg > 2:642854/1‑139 (MQ=255)
ggAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGCGGTTTATCGACCGTTTCAGCCGTATCTATACGCCCGCGATTATGGCCGTCGCTCTGCTGGTGACGCTgg > 1:682120/1‑139 (MQ=255)
gAGTCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGCGGTTTATCGACCGTTTCAGCCGTATCTATACGCCCGCGATTATGGCCGTCGCTCTGCTGGTGACGCTGGt > 1:1314087/1‑139 (MQ=255)
|
TCCGGTGGAGCGCGCAACGGGCGATAAAGTCCCTGCTGGTGCCACCAGCGTAGACCGTCTGGTGACGTTGGAAGTGCTGTCAGAACCGGGAGCCAGCGCCATTGACCGGATTCTGAAACTGATCGAAGAAGCCGAAGAGCGTCGCGCTCCCATTGAGCGGTTTATCGACCGTTTCAGCCGTATCTATACGCCCGCGATTATGGCCGTCGCTCTGCTGGTGACGCTGGT > NC_000913/3607326‑3607553
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
