Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F1 I1 R1 71 51.6 2219666 95.9% 2128659 118.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,807,360 G→A G77S (GGC→AGC)  proX → glycine betaine/proline ABC transporter periplasmic binding protein, cold shock protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,807,3600GA100.0% 258.8 / NA 72G77S (GGC→AGC) proXglycine betaine/proline ABC transporter periplasmic binding protein, cold shock protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (36/36);  total (36/36)

TCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATA  >  NC_000913/2807227‑2807492
                                                                                                                                     |                                                                                                                                    
tCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGAt                                                                                                                                 <  2:293/139‑1 (MQ=255)
   aGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCa                                                                                                                              <  1:105865/139‑1 (MQ=255)
    gTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCaa                                                                                                                             >  2:134683/1‑139 (MQ=255)
              ccATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCAccgc                                                                                                                   >  1:4633/1‑139 (MQ=255)
                 tCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGt                                                                                                                >  1:594992/1‑139 (MQ=255)
                 tCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGt                                                                                                                >  2:570214/1‑139 (MQ=255)
                         gaaACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGa                                                                                                        <  1:244911/139‑1 (MQ=255)
                            aCCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCt                                                                                                                          <  2:47500/118‑1 (MQ=255)
                            aCCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCt                                                                                                                          >  1:47500/1‑118 (MQ=255)
                              cTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCa                                                                                                   <  1:305100/139‑1 (MQ=255)
                                 ccAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTg                                                                                                >  1:775740/1‑139 (MQ=255)
                                 ccAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTg                                                                                                >  2:712918/1‑139 (MQ=255)
                                 ccAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTg                                                                                                <  1:668999/139‑1 (MQ=255)
                                        ctgctgGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGaca                                                                                         <  1:468994/139‑1 (MQ=255)
                                               tCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTa                                                                                  <  2:645929/139‑1 (MQ=255)
                                                   tCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGaa                                                                              >  1:201612/1‑139 (MQ=255)
                                                   tCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGaa                                                                              >  1:387671/1‑139 (MQ=255)
                                                   tCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGCTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGaa                                                                              >  1:733858/1‑139 (MQ=255)
                                                      tGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGaa                                                                                                             >  1:632785/1‑105 (MQ=255)
                                                      tGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGaa                                                                                                             <  2:632785/105‑1 (MQ=255)
                                                        cgcTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCa                                                                                                   <  1:785673/113‑1 (MQ=255)
                                                        cgcTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCa                                                                                                   >  2:785673/1‑113 (MQ=255)
                                                        cgcTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGac                                                                                          >  2:79202/1‑122 (MQ=255)
                                                        cgcTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGac                                                                                          <  1:79202/122‑1 (MQ=255)
                                                         gcTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGcc                                                                        >  1:303258/1‑139 (MQ=255)
                                                                  aTTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGAt                                                               <  1:756087/139‑1 (MQ=255)
                                                                   ttAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATa                                                              <  2:303258/139‑1 (MQ=255)
                                                                    tAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCAt                                                                                             >  2:255848/1‑107 (MQ=255)
                                                                    tAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCAt                                                                                             <  1:255848/107‑1 (MQ=255)
                                                                            aCCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAAc                                                                                                                            <  2:515362/68‑1 (MQ=255)
                                                                            aCCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAAc                                                                                                                            >  1:515362/1‑68 (MQ=255)
                                                                                tCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAg                                                                             >  1:844624/1‑111 (MQ=255)
                                                                                tCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAg                                                                             <  2:844624/111‑1 (MQ=255)
                                                                                tCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCg                                                 >  1:465035/1‑139 (MQ=255)
                                                                                 caacaaACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCAc                                                                                                  <  2:419412/89‑1 (MQ=255)
                                                                                 caacaaACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCAc                                                                                                  >  1:419412/1‑89 (MQ=255)
                                                                                 caacaaACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGt                                                <  1:12601/139‑1 (MQ=255)
                                                                                  aacaaACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGacaac                                                                                       <  1:609122/99‑1 (MQ=255)
                                                                                  aacaaACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGacaac                                                                                       >  2:609122/1‑99 (MQ=255)
                                                                                          cAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTa                                       >  1:1102262/1‑139 (MQ=255)
                                                                                            gCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTAtt                                     >  1:102629/1‑139 (MQ=255)
                                                                                                       tACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGgcg                          <  1:145455/139‑1 (MQ=255)
                                                                                                        aCAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTg                                                                                                               <  2:632458/53‑1 (MQ=255)
                                                                                                        aCAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTg                                                                                                               >  1:632458/1‑53 (MQ=255)
                                                                                                          aaCGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGgcg                          >  2:844147/1‑136 (MQ=255)
                                                                                                          aaCGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGgcg                          <  1:844147/136‑1 (MQ=255)
                                                                                                           aCGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGc                      <  2:201612/139‑1 (MQ=255)
                                                                                                           aCGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGc                      <  1:570214/139‑1 (MQ=255)
                                                                                                           aCGTTGGCTACACCTCACTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGc                      <  1:230306/139‑1 (MQ=255)
                                                                                                            cGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCg                                                                       <  1:609566/89‑1 (MQ=255)
                                                                                                            cGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCg                                                                       >  2:609566/1‑89 (MQ=255)
                                                                                                            cGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGca                     <  2:102629/139‑1 (MQ=255)
                                                                                                            cGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGca                     <  2:62683/139‑1 (MQ=255)
                                                                                                            cGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGca                     <  2:733858/139‑1 (MQ=255)
                                                                                                            cGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGca                     <  1:134683/139‑1 (MQ=255)
                                                                                                            cGTTGGCTACACCTCGCTGGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGca                     >  1:617395/1‑139 (MQ=255)
                                                                                                              ttGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGcaca                   >  2:166899/1‑139 (MQ=255)
                                                                                                              ttGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGcaca                   >  1:112502/1‑139 (MQ=255)
                                                                                                              ttGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGca                     <  2:80333/137‑1 (MQ=255)
                                                                                                              ttGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGca                     >  1:80333/1‑137 (MQ=255)
                                                                                                               tGGCTACACCTCGCTTGCTTCCAGGGATGCAACCTTCACCGCCGTGAACTGTACGCCACTGCATGACAACATGTACCAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAg                  >  2:679872/1‑139 (MQ=255)
                                                                                                               tGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGaca                                                                                         >  1:547737/1‑68 (MQ=255)
                                                                                                               tGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGaca                                                                                         <  2:547737/68‑1 (MQ=255)
                                                                                                               tGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGc                      >  2:966035/1‑135 (MQ=255)
                                                                                                               tGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGc                      <  1:966035/135‑1 (MQ=255)
                                                                                                                           gcttgcttCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGaca                                                                                         >  1:1077383/1‑56 (MQ=255)
                                                                                                                           gcttgcttCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGaca                                                                                         <  2:1077383/56‑1 (MQ=255)
                                                                                                                           gcttgcttCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAgggg                                         <  2:640875/104‑1 (MQ=255)
                                                                                                                           gcttgcttCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAgggg                                         >  1:640875/1‑104 (MQ=255)
                                                                                                                           gcttgcttCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAg                                            >  2:1021129/1‑101 (MQ=255)
                                                                                                                           gcttgcttCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAg                                            <  1:1021129/101‑1 (MQ=255)
                                                                                                                               gcttCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATa  >  1:294193/1‑139 (MQ=255)
                                                                                                                                     |                                                                                                                                    
TCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATA  >  NC_000913/2807227‑2807492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A