Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F1 I1 R1 71 51.6 2219666 95.9% 2128659 118.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,970,427 (ACG)4→3 coding (295‑297/1131 nt) wecB → UDP‑N‑acetyl glucosamine‑2‑epimerase

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3970418 3970420 3 62 [0] [0] 62 wecB UDP‑N‑acetyl glucosamine‑2‑epimerase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3970421 =0 (0.000)62 (1.250) 44/218 0.1 100% coding (289/1131 nt) wecB UDP‑N‑acetyl glucosamine‑2‑epimerase
?NC_000913 = 3970417 0 (0.000)coding (285/1131 nt) wecB UDP‑N‑acetyl glucosamine‑2‑epimerase

GATK/CNVnator alignment

N/A