Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F1 I1 R1
|
73 |
24.7 |
1166784 |
93.9% |
1095610 |
107.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,564,585 |
A→G |
G383G (GGT→GGC) |
dosP ← |
oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated, cold‑ and stationary phase‑induced bioflim regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,564,585 | 0 | A | G | 100.0%
| 93.1
/ NA
| 25 | G383G (GGT→GGC) | dosP | oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated, cold‑ and stationary phase‑induced bioflim regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (13/12); total (13/12) |
CACGCATAGCCAAGGCTATCAATCACATCCTGAATATGGTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGACCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTGACGGCTTTTTTCCTGTTCCAGCGCCAGCGCGGCCATATGCTGGCTGATATCTGCCACGCGTTCGATAAAGGCGCTGGTTTCTGCTCCTGACG > NC_000913/1564460‑1564718
|
cACGCATAGCCAAGGCTATCAATCACATCCTGAATATGGTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGAt < 1:544438/139‑1 (MQ=255)
acATAGCCAAGGCTATCAATCACATCCTGAATATGGTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCaa > 2:68571/2‑139 (MQ=255)
cAAGGCTATCAATCACATCCTGAATATGGTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGAt < 1:68571/139‑1 (MQ=255)
ggCTATCAATCACATCCTGAATATGGTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGa < 1:454195/138‑1 (MQ=255)
ggCTATCAATCACATCCTGAATATGGTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGa > 2:454195/1‑138 (MQ=255)
ccTGAATATGGTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTg > 2:244142/1‑139 (MQ=255)
gTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGAt > 2:56880/1‑101 (MQ=255)
gTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGAt < 1:56880/101‑1 (MQ=255)
gTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGa > 1:376690/1‑113 (MQ=255)
gTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGa < 2:376690/113‑1 (MQ=255)
acacCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAg < 2:159340/110‑1 (MQ=255)
acacCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAg > 1:159340/1‑110 (MQ=255)
aTGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCaa < 1:505227/94‑1 (MQ=255)
aTGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCaa > 2:505227/1‑94 (MQ=255)
tGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTGACGGCTTTTTTCCTGTTCCAGCGCCAGCGCGGCCATATGCTGGCTGat > 2:113404/1‑139 (MQ=255)
cAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTGACGGCTTTTTTCCTGTTCCAGCGCCAGCGCGGCCATATGCTGGCTGATATCTGCCACGCGTTCGATAAAg > 2:316254/1‑133 (MQ=255)
cAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTGACGGCTTTTTTCCTGTTCCAGCGCCAGCGCGGCCATATGCTGGCTGATATCTGCCACGCGTTCGATAAAg < 1:316254/133‑1 (MQ=255)
cAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTGACGGCTTTTTTCCTGTTCCAGCGCCAGCGCGGCCATATGCTGGCTGATATCTGCCACGCGTTCGATAAAGGCGCTg < 1:113404/139‑1 (MQ=255)
gTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAgtt < 2:450644/47‑1 (MQ=255)
gTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAgtt > 1:450644/1‑47 (MQ=255)
tGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTGACGGCTTTTTTCCTGTTCCAGCGCCAGCGCGGCCATATGCTGGCTGATATCTGCCACGCGTTCGATAAAGGCGCTGGTTTCTGc > 1:568183/1‑139 (MQ=255)
tGGCAGGCCGGTCATCGGATCAAATTGGATGAgttgtt < 2:21965/38‑1 (MQ=255)
tGGCAGGCCGGTCATCGGATCAAATTGGATGAgttgtt > 1:21965/1‑38 (MQ=255)
tGGCAGGCCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTGACGGCTTTTTTCCTGTTCCAGCGCCAGCGCGGCCATATGCTGGCTGATATCTGCCACGCGTTCGATAAAGGCGCTGGTTTCTGCTCCTGAc > 2:462941/1‑139 (MQ=255)
ggCAGGCCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTGACGGCTTTTTTCCTGTTCCAGCGCCAGCGCGGCCATATGCTGGCTGATATCTGCCACGCGTTCGATAAAGGCGCTGGTTTCTGCTCCTGACg < 1:244142/139‑1 (MQ=255)
|
CACGCATAGCCAAGGCTATCAATCACATCCTGAATATGGTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGACCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTGACGGCTTTTTTCCTGTTCCAGCGCCAGCGCGGCCATATGCTGGCTGATATCTGCCACGCGTTCGATAAAGGCGCTGGTTTCTGCTCCTGACG > NC_000913/1564460‑1564718
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
