Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F27 I0 R1
|
191 |
118.8 |
2757226 |
85.6% |
2360185 |
223.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,274,349 |
T→G |
21.8% |
G57G (GGT→GGG) |
yejB → |
microcin C ABC transporter permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,274,349 | 0 | T | G | 21.8%
| 148.8
/ 5.5
| 75 | G57G (GGT→GGG) | yejB | microcin C ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base T (14/39); new base G (15/5); total (31/44) |
| Fisher's exact test for biased strand distribution p-value = 3.18e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TACCTGGTGGTATGACGTCAATAAAGCGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGA‑GTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGC > NC_000913/2274115‑2274578
|
tACCTGGTGGTAGGACGTCAATAAAGCGGCCAAACTGCCTTCCGCCAGCAAACAGGGAGA‑GTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGtt < 1:1210311/238‑1 (MQ=255)
tggtggTATGACGTCAATAAAGCGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGA‑GTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGGCGCCATTGAGTTTGGTAATGCCGGGGTATTACCCGGCCCCGCCGGTGGAGGGGTTtgtg > 2:265613/1‑238 (MQ=255)
tggtggTATGACGTCAATAAAGCGGCCAAACTACCGTCCGCCAGCAAACAGGGAGA‑GTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGCCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGGGTATTACCCGGCGCAGGCGGTGAAGGGGTTCGTg > 1:1276042/1‑238 (MQ=255)
ggtATGACGTCAATAAAGCGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGA‑GTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGGGTTCTGg‑ccag > 1:1049429/1‑238 (MQ=255)
ccggtcaaaacgCGGCCAAACGGCCGTCCGCCAGAAAACAGGGGCA‑GTAGGTGGGTGCTTACCTGGTTCGCCGTCTGTTGCTGGGGATCCCAACATTGTGGGCGATTATCCCCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATgcg < 2:1071354/228‑1 (MQ=255)
gTCAATAAAGCGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGA‑GTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGGGAAGGGGTTCTGG‑CCAGCCATggcca > 1:315683/1‑235 (MQ=255)
aaaaaggCGGCCACCCTGCGTCCCGCCAAAAAACAGGGGGA‑TTAGATGGCCGCTTCCCTGTTTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCaaa < 2:73807/232‑1 (MQ=255)
aGCGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGA‑GTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGGGATCCCAACATTATGGGCGGTTATCACCCTCAAATTTTTCATCGTG‑CCAATTGCGCCTGGCGGTCCGGTCGACCAGGCCACCGCCGCCATTTAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGGGAAGGGGTT‑GTGTACAGCCAAGGGCAAACcgggg > 2:438656/1‑237 (MQ=255)
ccAAACTGCCGTCCGCCAGCAAACAGTGAGA‑GTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAACTTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGCGTATTACCCGGCGCAGGCGGTGAAAGGGTTCGTG‑CCAGCCACGAGCAAACGGGTGTCGGc > 1:287688/1‑239 (MQ=255)
ccAAACTGCCGTCCGCCAGCAAACAGGGAGA‑GTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGGGGTCCTG‑CCAGCCCAGCGCAAACGCGGGTccgg > 1:1196378/1‑236 (MQ=255)
gTCCGCCAGCAAACAGGGAGA‑GTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTTCCCGGCGCAGGCGGTGAAGGGGTTGGTG‑CCCGCCAGGCGCAAACGGGGGTGGGCAAAAACAGCg > 2:114314/1‑239 (MQ=255)
cccccccgaaaCAGGGGGGGGTAGTTGGGCCGTTACCGTATTCCCCGTTTGTTCGTGGTGGTCCCAACATTTTGGGCGATTATCCCCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGa < 2:1324729/231‑1 (MQ=255)
ccccccagaaaCTGGGGGG‑GTGGGTGGGCGTTTTCCTGTTTCGCCGGTTGTTTATGGTGAACCCAACATTATGGGGGATTTACCCCCACAACTTTTTTATCGTG‑AAAATTGCGCGTGGCGGGCGGGTCGACCCGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGAc < 2:766484/231‑1 (MQ=255)
cccccAGCAAAGGGGGGGA‑TTAGGTGGGGCTTTTCCTTATTCCCCGTCTGTTGCTGGGGATCCCAACATTATGGGCGATTATCCCCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGAc < 2:332369/236‑1 (MQ=255)
tggtGGGGGTTTCCCTGCTTCGCCTTTTTTTTCGGGTGCCCCCAACTTTATGGGCTATTTGCCCCATCAATTTTTTCATCGTG‑CAAATTGCGCCGGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGAcg < 2:599379/235‑1 (MQ=255)
aGATGGGGGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGAcg < 1:1353135/238‑1 (MQ=255)
gATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGGTTTCGGG‑CCAGCCAACCCCAAACCGGTGTCGGCAAAATACGGGACAGGAAATACCGggggggcggcg > 2:170513/1‑234 (MQ=255)
tGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCCTTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGACGGCGTTCGTG‑CCACCCCAGCGCAAACGGGGGTCGGGCATATCAGCGCCCGTAATTACCCTGGCGGACACggg > 2:255463/1‑238 (MQ=255)
gggCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGGGAAGGTGGTTGTG‑CCAGGCCTGCGCAAACGGGGGTCGGCCATATCAGCGCGAGGAATTACCGTGGGGGGCgggggt > 2:1162952/1‑237 (MQ=255)
gtccTTACCTGATTCGCCTTCTATTGCTGGTTATCCCAACATTATGGGCGATTATCACCATCAACTTGTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGAtt < 1:733349/235‑1 (MQ=255)
gcgcTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGAtt < 1:186243/238‑1 (MQ=255)
gcgcTTACCTGATTCGCCGTCTGGTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGAtt < 1:750381/238‑1 (MQ=255)
cTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGGTGCGGACGCGGATTAGa > 1:1065802/1‑238 (MQ=255)
cTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGGGTTCGTG‑CCCGCCATGCGCAAACGGGTGTGGGCAAAATCAGCGACAGTAATTACCGTGGCGGagccgggtttga > 1:1110620/1‑227 (MQ=255)
cTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGGGTTCGGG‑CCAGCCATGGGCAAACGGGGGTCGGCAATATCAGCGACCGTAATTACCGTGGCGGACCCGGGTTAGa > 1:917526/1‑238 (MQ=255)
aCCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGGGTCGGCAAAATCAGCGACAGTAATTACAGTGGCGGACGCGGAGTAGATCCa > 1:1128057/1‑239 (MQ=255)
aCCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGCGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGAAATTACCGTGGCGGACCCGGATTAGATCCa > 1:681140/1‑239 (MQ=255)
ccGTTTTTTTCTGGTGTTCCCAACATTTGGGGCGTTTATCCCCATCAACTTTTTCACCGGG‑CAAATTGCCCCTGGCGGGCCGGTCGACCGGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCg < 2:1276235/239‑1 (MQ=255)
gTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGGGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCCTGGCGGACCCGGATTAGAACCCGaaaccggttct > 1:430590/1‑230 (MQ=255)
tCTATTGCTTGTGATCCCAACAGTATGGGCGATTATCACCATTAACTTTTTCATCGTG‑CAAATTGCGCCGGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGccg < 1:886108/239‑3 (MQ=255)
ttgttacccccACTTTGTGGGCGATTATCACCCTCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACt < 2:244839/232‑1 (MQ=255)
gTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCCGGCGGTGAAGGGGTTCGTG‑CCAGCCCTGCGCCAACGGGGGTCGGCACTATCCGCCACAGGAATTACCGTGCGGGGCGCGGGTTTGATCCCAAAAGGATGGCTgagcgaaacc > 2:694189/1‑231 (MQ=255)
gttccccAACTTTTTGGGCGTTTATCCCCATCACTTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGGCCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCAt < 2:895753/235‑1 (MQ=255)
ggtCCCAACATTAGTGGCGATTATCCCCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCAt < 1:57686/236‑1 (MQ=255)
cccAACATTCTGGGCTATTATCACCATCAACTTTTGCATCGGG‑AAAATTGCCCGTGGCGGTCCGGTCGACCGGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCt < 1:530299/239‑1 (MQ=255)
tGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGGGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCAATCATCGCTACGGGTTTGa > 1:493159/1‑239 (MQ=255)
aTTATCCCCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCAATCGCCGACATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGc < 1:58590/238‑1 (MQ=255)
aTTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGGGTTCGGG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGCCAGAAATTACCGTGGGGGACGCGGGTTAGAGCCAGAAATGATGCCTGGGGTAACTCATCCCTCCGGTTTTGTAAAGcc > 2:900663/1‑239 (MQ=255)
ttATCCCCATCAACTTTTTCATCGTG‑CAAATTGCGCCGGGCGGTCCGGTCGACCGGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCg < 1:119934/239‑1 (MQ=255)
ttttcccacttaCTTTTTTTTCCTGCCAAATTGCCCTGGGCGGGCCGGTGCACCGGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCg < 2:729307/228‑1 (MQ=255)
aCCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGGTTAGATCCCGAAGGGATAGCCGAGATCACTCATCGCACCGGGTTTGGTAAACCGAA‑cc > 1:925118/1‑238 (MQ=255)
cAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACCGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGGAGTGATCGCTGGAATCACTCCTCGCTACGGGTTTGATAAGCCGAG‑CCACGaa > 1:18946/1‑238 (MQ=255)
aaCTTTTTCATCGTG‑CAATTTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACg < 1:1162952/239‑1 (MQ=255)
ttCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCCGCGACAGTAATTTCCGTGGCGGACGCGGGTTAGATCCCGAAAGGGTCGCTGAGGTCACCCAACCCCACGGGTTTGGTAAACCGATACCAC‑AACGGTACtt > 2:280299/1‑239 (MQ=255)
ccGTG‑GAAATTGCGCCTGGGGGTCCGGTCGAACCGGCCATCGCCGCCATTGATTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCaaa < 1:1202007/238‑1 (MQ=255)
atttGGGCCGGGCGGTCCGGTCGACCGGGCCATCGCCGCCATTGGGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGctct < 2:167134/237‑1 (MQ=255)
aaTTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGctct < 1:694189/239‑1 (MQ=255)
gggcCTGGGGGCCCGGTCGACCAGGCCATGGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGa < 1:280299/237‑1 (MQ=255)
gCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGACTACAt < 1:900663/238‑1 (MQ=255)
cgccAGGCCATGGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGAtt < 1:255463/236‑1 (MQ=255)
tCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGAtt < 2:280250/127‑1 (MQ=255)
tCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGAtt > 1:280250/1‑127 (MQ=255)
cccccgccATTGTGTTTGGTAATGGTGGGGGTTACCCCGTGGCAGGCGGTGAAGTGGGTCTGG‑CCGGCCAGGCGCAAACGGGGGGCGGGAATATCAGCGACAGTAATTACCTGGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGAACACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGc < 2:1223671/236‑1 (MQ=255)
cgccgcCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGGGTTCGGG‑CCAGCCATGCGCAAACGGGGGGCGGCAATATCAGCGGCAGTAATTACCGGGGCGGACCCGGATTAGGTCCAGAAAGGATCGCTGAGATCACCCATCGCCCCGGTTTTTGTAAGACGAT‑TCCCCAACGGTAATTCCAAATGCCCTGGGACTACAACCGCTTTTGGTTTGGGGGTAGcc > 2:634829/1‑239 (MQ=255)
gccgccATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGGGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGGCGCGGAGTAGATCCAGAAGGGATCGCTTAGATCACTCCTCGCTTCGGTTTTGGTAAACCGAT‑CCCCGAACCTTACTTCCAAATGGTCTGGGCCTACAAACCCTTTGAttttttggaaaaccc > 2:120763/1‑228 (MQ=255)
aTTGAGTTTGGGAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCAAGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGGCGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCg < 1:938578/239‑1 (MQ=255)
tttGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGGTTAAAGCCAGAAGTGATCCCTGGGATAACTCAACGCCACGGTTTTGGAAAGCCGCT‑CCCAGAACGTTACTTCAAAAGGGCCTGGGACAAAATCCCCTTTTATTTTGGGGTTAACCTtttttgaacgg > 2:1257699/1‑231 (MQ=255)
tttGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGGGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGAAGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTTGTAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGACTCAATCCGCTTTGATTTTTGCGTTAGCCTGTTTCCCaagg > 1:924358/1‑235 (MQ=255)
ttgTAATGCCGGGGTGTTCCCCGGCGGCGGGTGTGAAGGTGGTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCt < 2:493159/237‑1 (MQ=255)
tGGTAATGCCGGAGTATTTCCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCt < 1:114314/239‑1 (MQ=255)
tGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCaaaa < 1:298348/179‑1 (MQ=255)
gggtttttcccGGCGGAGGCGGTGAAGGGTGTCGTG‑CCCGCCAGGGGGAAACGGGTGTCGGCAATTTCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACg < 2:715666/231‑1 (MQ=255)
ttATTACCCGGGGCAGGGGGTGAAGGTGTTCGGG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGc < 1:3891/237‑1 (MQ=255)
gttttccccGGCGCGGGGGGTGAAGGGGTTCGGG‑CCAGCCAGGGGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGc < 2:924358/232‑1 (MQ=255)
gTATTCCCCGGCGCGGGGGGTGTAGGTTGTCGGG‑CCAGGCATGGGCAAACGGGTGGCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCTCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGTCGc < 2:287688/238‑1 (MQ=255)
gTATTACCGGGCGGGGGCGGTGAAGGGTGTCGTG‑CCAACCATGGCCAAACGGGTTTCGGAAATATCAGCGAAAGTAATTCCCGTGGCGGACGCGGATTAGATCCAGGAGGGAGCGCTGAGATCACGCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGc < 2:992145/238‑1 (MQ=255)
gTATTACCCGGGCCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGc < 1:446735/238‑1 (MQ=255)
gTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGctct < 2:1058203/178‑1 (MQ=255)
gTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGctct > 1:1058203/1‑178 (MQ=255)
ttccccGGGCCAGGCGGTGAAGGTGTTCGGG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGAt < 2:1067915/236‑1 (MQ=255)
gggccAGGCGGTGAAGGGGTTCGTG‑CCAGCCATGCGCAACCGGGTGTCAGCAAAAACAGCGACAGGAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGa < 1:1301729/235‑1 (MQ=255)
cgcAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCCAAATGCTCTGGGGCTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGGGCTGACGCTGATTTAAGACa > 1:1067915/1‑239 (MQ=255)
cgcAGGAGGCGAAGGTGGTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGAAGCGGATTAGATCCAGAAAGGATCGCTTAGATCACTCATCGCCACGGGTTTTAATAGCCGAT‑CACCGACAGTTACTTCACAAAGCTCTGGGACTACATCCGCTTTGATTTTGGGGTTAACCTTTTTTCCAGCGCCACGCGGCGGGAGCGGATTaaaaaaa > 2:1232401/1‑235 (MQ=255)
gggggAAGGTTTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGGGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTg < 2:1110620/234‑1 (MQ=255)
ggTTAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGc < 1:68601/238‑1 (MQ=255)
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TACCTGGTGGTATGACGTCAATAAAGCGGCCAAACTGCCGTCCGCCAGCAAACAGGGAGA‑GTAGATGGGCGCTTACCTGATTCGCCGTCTGTTGCTGGTGATCCCAACATTATGGGCGATTATCACCATCAACTTTTTCATCGTG‑CAAATTGCGCCTGGCGGTCCGGTCGACCAGGCCATCGCCGCCATTGAGTTTGGTAATGCCGGAGTATTACCCGGCGCAGGCGGTGAAGGTGTTCGTG‑CCAGCCATGCGCAAACGGGTGTCGGCAATATCAGCGACAGTAATTACCGTGGCGGACGCGGATTAGATCCAGAAGTGATCGCTGAGATCACTCATCGCTACGGTTTTGATAAGCCGAT‑CCACGAACGTTACTTCAAAATGCTCTGGGACTACATCCGCTTTGATTTTGGCGATAGCCTGTTTCGCAGCGCCTCGGTGCTGACGCTGATTAAAGACAGTCTGC > NC_000913/2274115‑2274578
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
