Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F9 I0 R1
|
177 |
96.4 |
2178490 |
87.4% |
1904000 |
226.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,909,229 |
A→C |
18.5% |
G146G (GGT→GGG) |
pyrG ← |
CTP synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,909,229 | 0 | A | C | 18.5%
| 132.4
/ 6.3
| 70 | G146G (GGT→GGG) | pyrG | CTP synthetase |
| Reads supporting (aligned to +/- strand): ref base A (31/24); new base C (3/12); total (34/36) |
| Fisher's exact test for biased strand distribution p-value = 1.87e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGCAATCTTCGCACGTTCGTTCGCCGGAACAGCGCGATCTGAACGACAAATCAGGATGTCAGGCTGGATACCGATGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGA‑CCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACGCTCGTAGTGCCCCAGGTCCAGGTCGGTTTCA > NC_000913/2908992‑2909466
|
tGCAATCTTCGCACGTTCGTTCGCCGGAACAGCGCGATCTGAACGACAAATCAGGATGTCAGGCTGGATGCCGATGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCa > 1:808096/1‑238 (MQ=255)
tGCAATCTTCGCACGTTCGTTCGCCGGAACAGCGCGATCTGAACGACAAATCAGGATGTCAGGCTGGATACCGATGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAAAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTCCGGGGAACGGCAAGGATTCGATATCa > 1:34501/1‑238 (MQ=255)
tGCAATCTTCGCACGTTCGTTCGCCGGAACAGCGCGATCTGAACGACAAATCAGGATGTCAGGCTGGATACCGATGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGGGCATAAACAGAGTGTGCTCCCGGCCAATTTCAACAGCCATCTGGCGAATCGCCTCGAGGAACGGCAAGAATTCGAAAacac > 2:167238/1‑239 (MQ=255)
tCTTCGCACGTTCGTTCGCCGGAACAGCGCGATCTGAACGACAAATCAGGATGTCAGGCTGGATACCGATGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGCCAGGGGCATAAACAGAGGGTGCTCACGGCCAATTTCAACAGCCACCTGGCGAATCGCTTCGAGGAAAGGCAAGGATTCGATAACACCt > 2:1005796/1‑236 (MQ=255)
gCACGTTCGTTCGCCGGAACAGCGCGATCTGAACGACAAATCAGGATGTCAGGCTGGATACCGATGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGGGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGGCGGGATTCGATATCaaaaaaggtacc > 2:916545/1‑228 (MQ=255)
ccgttcgttCCCCGGAACAGCGCGATCTGAACGACAAATCGGGATGTCAGGCTGGATACCGAGGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTAccgc < 1:167238/238‑1 (MQ=255)
tcttgccccGTAACCGCGGTATCTGAACGAAAATTCAGGGTGTCAGGCTGGATCCCGAGGGGGAGCATCTTTTTTACAGGGGTCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGGGCATAAACAGAGTGTGCTCACGGCAAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCCCCTACTGTACCGCCGAt < 2:319546/232‑1 (MQ=255)
cgttcgCCGGAACAGCGCGATCTGAACGACAAATCAGGATGTCAGGCTGGATACCGATGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGGGACTCGATTCAGGGAACGGCAAGGATTCGATATCCCCCACTGTAccgccgtct > 2:684581/1‑236 (MQ=255)
cgttcgCCGGAACAGCGCGATCTGAACGACAAATCAGGATGTCAGGCTGGATACCGATGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGAtt > 1:732996/1‑239 (MQ=255)
tcgcgggttCTGAACAAAAAAGCAGGGTGGAAGGTTGGAATCCTGTGGAGATCGAGTTTTTTACAGGGTGCGGATGTGGTTTGGTTTTGTCTACCCATGGCGCTGCCTGGTACGTCGCCAGGGCCAGGTGCAAAAACGGAGTGGGCTCCCGGTCAATTTCAACAGCCATCTGGGAATTCGTTTCTAGGAACGGTAAGGATTCGATATCACCAACTGTACCGCCGATTTCTACCAGtact < 2:736382/231‑1 (MQ=255)
cgcgATCTGAACGACAAATCAGGATGTCAGGCTGGATACCGATGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGGGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGCATCGCTTCGGGGAACGGCAAGGATTCGAAATACCCCACTGTACCCCCGATTTTTACAAggcgaacg > 2:977924/1‑232 (MQ=255)
cgcgATCTGAACGACAAATCAGGATGTCAGGCTGGATACCGATGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGAAAACACCAACTGTACCGCCCATTTCTACCAgacatac > 2:488668/1‑232 (MQ=255)
cgcgATCTGAACGACAAATCAGGATGTCAGGCTGGATACCGATGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTGGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGACAGTGCTCCCGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGGGGAACGGCAAGGACTCGGTATCACCAACCGAACCCCCGATTTCTACCaagacaaaa > 2:14211/1‑231 (MQ=255)
gctaTCTAAACGACAAATCAGGATGTCAGGCTGGATCCCGATGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGtact < 1:122370/232‑1 (MQ=255)
gcgATCTGAACGACAAATCGGGCTGTCAGGCTGGATCCCGAGGGAGGCAAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGACATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGtact < 1:997892/235‑1 (MQ=255)
tCTGAACGACAAATCAGGATGTCAGGCTGGATACCGATGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTCCTGGACCGCCGATTTCTTCCAGTACGACGTCCTg > 1:872132/1‑239 (MQ=255)
tGAAAGAAAAAGCGGGTTGTCGGGGTGGATGCCGATGGAGAGCCGCTTTTTTACGGGGTGCTGAGTCGGTTTGGTTTTGACTCCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGGGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGAc < 2:808096/239‑1 (MQ=255)
gACAAATCAGGTTTTCAGGGTGGATACCGAGGGAGAGCAGCTTTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCCCCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCg < 2:139034/239‑1 (MQ=255)
aaaTCAGGATGTCAGGCTGGATACCGATGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGCACGGCAAGGATTCGCTATCACCTACTGTACCGCCGATTTCTACACGTACTACGTCATGACCTTCAcc > 1:1046863/1‑238 (MQ=255)
cAGGATGTCAGGCTGGATACCGATGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCACCGTCAGGTGCATACACAGAGTGTGCTCACGGCCAACTTCAACAGCCATCTGGAGAAACGCTTCGAGGAAAGGCCAGGAATCGACATCCACACCTGTACCCCCGCTTTACACCAGCACAACATCCAGACCTTCCCCACCtt > 2:2972/1‑239 (MQ=255)
ggcAGGTTGGATACCGATGGAGGGCAGCTTTTTTACAGAGTTCTGAGTCGGTTTGGTTTTGAC‑TCACCGAACCCTGCCATGAACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCCCGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCa < 1:576075/236‑1 (MQ=255)
ggggggggATACCGGTGGAGGGCCGCCTTTTTACAGGGGTCTGAGTCGGTTTGGTTTTGACTTCACCAGGCGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCCCCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCAcg < 1:371566/233‑1 (MQ=255)
cctgCTGGATACCGTTGGAGAACCTCTTTTTGACAGGGTGCTGGGGCGGTTTGTGTTTGACTCCACCAGCCGCCGCCATGTACGGCCCCAGCGGCAGGGGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCAcg < 2:830850/236‑1 (MQ=255)
cAGGCTGGATACCGATGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCCCCAGACGCTGCCATGTCCGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCAcg < 1:1005796/239‑1 (MQ=255)
cAGGCTGGATACCGATGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTTTACCGCCGATTTCTACCAGTACATAGGCATACCCCTCGCCACCTTCCAGCAc > 2:129548/1‑238 (MQ=255)
aGGTTGGATACCGATGGAGGGCAGCTTTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCCCCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCAcg < 1:916545/238‑1 (MQ=255)
ggttGGTTACCGGGGGAGGGCAGTTTTTTTAAAGGGGGCGGGGTGGGTTTGGTTTTGACTTCACCAGACGCTGCCAGGTACGGCACAAGCGTCAGGTGCATAAACAGGGTGTGTCCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCATGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCAcgcg < 2:43513/236‑1 (MQ=255)
gATACCGATGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCCTGACCTTCGCCACCTTCCCACACGCGCCCtt > 2:720907/1‑239 (MQ=255)
aTGGAGAGCAGCTTTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCCCCTACTGTACCGCCGATTTCTAc < 1:146300/188‑1 (MQ=255)
aTGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTAc > 2:146300/1‑188 (MQ=255)
aTGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCtt < 1:551561/208‑1 (MQ=255)
aTGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCtt > 2:551561/1‑208 (MQ=255)
gagaGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCATAACTACGGCATGACCTTCGCCACCTTCCAGCACGCCCCCTTTGATTGCGtt > 2:305218/1‑239 (MQ=255)
gagaGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATCTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGCTTTCTACCAGTACTACGTCCTGACCTTCGCCCCCTTCCAGCACGCGCCCTTTGATTGCGtt > 2:1046502/1‑239 (MQ=255)
cagcTCTTTTACAGGGTGCTGGGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCCCCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTAATTGCGTTAGTg < 1:45654/238‑1 (MQ=255)
cagcTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGGACCGCCGCTTTCTACCAGTACTACGGCATGACCTTCCCCACCTTCCAGCACACGCCCTTTGATTGCGTTAATGa > 2:144191/1‑239 (MQ=255)
agcTCTTTTGAGGGGTGCGGGGTGGGTTTGGTTTTGACTTCCCCCGGCGCTGCAATGTCCGGCACAGGCGGCAGGTGCATAAACAGTGTGTCCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTg < 2:989125/237‑1 (MQ=255)
tctTTTACTGATTGCTGAGTCGGTTTGGGTTTGACTTCTCCAGACGGTGCCTTTTACGGCACCCGCGTCAGGTGCTTAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTTCCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGAt < 1:692069/224‑1 (MQ=255)
tctTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCCCCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGAtgtg < 1:874466/239‑1 (MQ=255)
gTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACGGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCAAGCGCCCTTTGTTTGCGTTAGTAATTTGGGGAATaa > 2:410210/1‑236 (MQ=255)
gTGCTGAGGTGGTTAGGTTTTGACTTCACCAGACTCGCCCATGTGCGCCACCAGTGTCAGGTGCATAAACGGGGTGTGATCCAGGCCAATTTCAACAGCCATTTGGCGAATCGCTTCGAGGAACGGAAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATa < 1:684581/235‑1 (MQ=255)
gctggttggttttggtttTGACTTCCCCAGACCGGGCCATGGACGGCCCCAGGTTGAGGGGCATAAACAGGGGGTGCCCACAGACAATTTCACCCACCATCTGGCGAACCGCTTCGGGGAACGGCAAGGATTCGATATCCCCTACTGTACCGGCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTg < 2:680180/228‑1 (MQ=255)
gCTGAGTCGGTTTGGTTTTGCCTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGGGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTTTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTg < 1:816193/238‑1 (MQ=255)
tgggtttggtttTGCCTTCCCCAGACGCTGCCATGTACGGCACCAGCGTAAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGt < 1:305218/236‑1 (MQ=255)
gtttggtttTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTCCTGTACCGCCGGTTTCTACCAGAACTACGGCATGACCTTCCCCACCTTCCAGCCCGCCCCCTTTGATTGCGTTAGTGCTGGGCGGAAAAACACGCAC‑GGGTgg > 2:262455/1‑237 (MQ=255)
gtttggtttTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACAGCAAGGATTCGATATCACCTACTGTACCGCCGCTTTCTACCAGTACTACGTCCTGACCTTGCCCAACTTCCCGCACCGGCTCCTTGCTTGCGTTGGGGATTTGCGGGATAACCCGGAC‑GGGTggc > 2:241945/1‑237 (MQ=255)
cGCTGCCATGTACGGCCCCAGCGGCAGGTTCATAAACAGAGGGTGCCCACGGCCAATTCCAACAGCCATCTGGCGAATCTCTTCGAGGAACGGCAAGGATTCGATATCCCCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCACCgcggc < 1:129548/236‑1 (MQ=255)
gTACGGCCCAAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATCCCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCa < 1:1046502/239‑1 (MQ=255)
gTACGGACCCAGCGTCAGGTGCAAAAACAGAGTGGGCTCACGGCCAATTTCAACAGCCCTTTGGCGAATCGCTCCGAGGAACGGCAAGGATTCGATATCCCCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCa < 1:488668/239‑1 (MQ=255)
tACGGCCCCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCCCCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAg < 1:806444/239‑1 (MQ=255)
cACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGAt > 2:204613/1‑177 (MQ=255)
cACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGAt < 1:204613/177‑1 (MQ=255)
cACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGt > 1:107421/1‑239 (MQ=255)
cACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCACCGCGCGGTTCTTTACGCAGAACg > 1:261109/1‑238 (MQ=255)
aCCAGCGTCAGGTGCATAAACAGAGGGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGt < 1:291825/238‑1 (MQ=255)
gCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCagag < 1:247627/239‑1 (MQ=255)
aGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGt > 2:946819/1‑188 (MQ=255)
aGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGt < 1:946819/188‑1 (MQ=255)
tGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTCCGCAGAACGTCAGAGTAGAtcg > 1:834733/1‑236 (MQ=255)
ctaaaaCGGGGTGTGCCACCGGCCAATTTCCACCGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCCCCCACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGA‑c < 2:842300/236‑1 (MQ=255)
agTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGCGTGGAAAGGA‑CCCGTGGTGa > 1:958580/1‑239 (MQ=255)
gtgtGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCACCGCGGCGGTCTTTACGCAGAACGTCAGATTAGATACGA‑CCCGGGGTGaa > 1:480620/1‑239 (MQ=255)
tgtgCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCACGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGA‑CCCGGGGTGAAg > 1:284982/1‑239 (MQ=255)
gtgCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGCGGTAGTCACCGCGGCGTTCTTTACGCCGAACGTCCGAGAGGATACGG‑CCCGGGGGGAAgg > 2:983770/1‑238 (MQ=255)
ctaaCGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGGCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTTCGTTGGAGATGTTCGGAATAATC‑GTACAGGTTGGGCCGAGGTAGTCACCGCCGCGTTTTTTTTCCAGACGGTCAGACTAGA‑ACGATCCAGTGGGGAAggtgt > 2:850220/4‑239 (MQ=255)
cTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAGGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCAcg < 2:83860/124‑1 (MQ=255)
cTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCAcg > 1:83860/1‑124 (MQ=255)
ggcataaTTACAACCCCCGTCGGGGGACTCGCGTTGAGGAGCGGGAAGGATTCACTTTCCCCTACTGGCCCGCCGATTTCTACCAGTGCTACGTCATGACCGTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCGCCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGA‑CCCGTGGTGAAGTTGTTgcg < 2:34501/234‑1 (MQ=255)
cGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGGAGTCACCGCGGGGTTCTTTACGCAGAACGTCAGAGTAGATAAGA‑CCCGGGGTGAGATTGTTgcg > 2:624441/1‑239 (MQ=255)
aaCAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGCCAGAGCAGAGCAGA‑CCCGCGGGGACGTTTTTGcggcggggacctt > 2:46060/1‑232 (MQ=255)
cGAATCCTTTCGAGGAACGGCAAGGATTCGATACCCCCTACTTGCCCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGA‑CCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGa < 1:983770/238‑1 (MQ=255)
aaTCGCTTCGAGGAACGGCGAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTCCGGAATAACCTTCAC‑GGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGA‑CCCGCGGTGACGTTGTTGCGGGGGCCCAATTTTGTagacataaaa > 2:210051/1‑229 (MQ=255)
aaTCGCTTCGAGGAACGGCAAGAATTCGAGATCCCCTACCGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGA‑CCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGaaa < 1:318869/238‑1 (MQ=255)
cACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGA‑CCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACAAATGAAAAGCTCGTAGTGGCCCAGGTCACGGGCGGTTTCa > 1:374605/1‑239 (MQ=255)
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TGCAATCTTCGCACGTTCGTTCGCCGGAACAGCGCGATCTGAACGACAAATCAGGATGTCAGGCTGGATACCGATGGAGAGCAGCTCTTTTACAGAGTGCTGAGTCGGTTTGGTTTTGACTTCACCAGACGCTGCCATGTACGGCACCAGCGTCAGGTGCATAAACAGAGTGTGCTCACGGCCAATTTCAACAGCCATCTGGCGAATCGCTTCGAGGAACGGCAAGGATTCGATATCACCTACTGTACCGCCGATTTCTACCAGTACTACGTCATGACCTTCGCCACCTTCCAGCACGCGCTCTTTGATTGCGTTAGTGATGTGCGGAATAACCTGCAC‑GGTTGCGCCGAGGTAGTCACCGCGGCGTTCTTTACGCAGAACGTCAGAGTAGATACGA‑CCCGTGGTGAAGTTGTTGCGGCGGCTCATTTTGGTACGAATGAAACGCTCGTAGTGCCCCAGGTCCAGGTCGGTTTCA > NC_000913/2908992‑2909466
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
