Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F36 I0 R1 141 81.4 2739672 97.2% 2662961 142.9

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCA  >  NC_000913/2173218‑2173509
                                                                                                                                                 |                                                                                                                                                  
CAGATTAACACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATAACCCGGCGCACAATCAGCAATAAAAATGGTGACTGGGATAAAAATCAGGCTTCCCGATACCA‑‑CCGCCGT                                                                                                                                              >  NB501016:230:HFVJLAFXY:1:11312:1121:18259/1‑150 (MQ=60)
  GGTTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATG                                                                                                                                           >  NB501016:230:HFVJLAFXY:2:11105:15884:10413/1‑151 (MQ=60)
   ATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGT                                                                                                                                          <  NB501016:230:HFVJLAFXY:3:11601:5149:10796/151‑1 (MQ=60)
       CCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCC                                                                                                                                      >  NB501016:230:HFVJLAFXY:2:21109:10723:18832/1‑151 (MQ=60)
         ACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGC                                                                                                                                    <  NB501016:230:HFVJLAFXY:1:21209:17026:16643/151‑1 (MQ=60)
             TCCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCCCCTGCTTACCCGGAACACAAACAGCAATTAAAATGCCGAGAGCGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGC                                                                                                                                 >  NB501016:230:HFVJLAFXY:1:21311:24257:4611/1‑150 (MQ=60)
               CACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCACC                                                                                                                              >  NB501016:230:HFVJLAFXY:3:21507:13978:7187/1‑151 (MQ=60)
                    CGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACACACAGCAATTAAAATGGTGAGTGGGATAAAACTCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGG                                                                                                                         <  NB501016:230:HFVJLAFXY:2:21305:24967:2251/151‑1 (MQ=60)
                           CATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACATCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGG                                                                                                                  <  NB501016:230:HFVJLAFXY:1:11207:23239:12064/151‑1 (MQ=60)
                                 CACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAAGGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATC                                                                                                            <  NB501016:230:HFVJLAFXY:3:11406:20431:15543/151‑1 (MQ=60)
                                  ACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCA                                                                                                           <  NB501016:230:HFVJLAFXY:1:21209:9669:17022/151‑1 (MQ=60)
                                  ACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATC                                                                                                            >  NB501016:230:HFVJLAFXY:2:21306:15169:13942/1‑150 (MQ=60)
                                    GAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCA                                                                                                                                   <  NB501016:230:HFVJLAFXY:2:11301:7999:9960/125‑1 (MQ=60)
                                         AGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTC                                                                                                    >  NB501016:230:HFVJLAFXY:3:21609:21438:12648/1‑151 (MQ=60)
                                          GCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCC                                                                                                   <  NB501016:230:HFVJLAFXY:1:21311:18455:15095/151‑1 (MQ=60)
                                            CGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG                                                                                                 <  NB501016:230:HFVJLAFXY:3:21610:5260:14576/151‑1 (MQ=60)
                                               TGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACC                                                                                              >  NB501016:230:HFVJLAFXY:2:11308:21289:3437/1‑151 (MQ=60)
                                                      AAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAAC                                                                                       >  NB501016:230:HFVJLAFXY:3:11504:23832:4973/1‑151 (MQ=60)
                                                         ATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTC                                                                                    <  NB501016:230:HFVJLAFXY:4:11403:17513:18762/151‑1 (MQ=60)
                                                            GCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATA‑‑ACACCGCCGTATGTCCCAGCAGCAACGACGGA                                                                                                                        >  NB501016:230:HFVJLAFXY:2:21106:26436:5848/1‑112 (MQ=60)
                                                                          CCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACG                                                                   <  NB501016:230:HFVJLAFXY:4:11402:5161:4439/151‑1 (MQ=60)
                                                                                         CACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATAAAGGCCAATCAGGACCTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGAT                                                    >  NB501016:230:HFVJLAFXY:1:21306:4249:16949/1‑151 (MQ=60)
                                                                                                AGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCTCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTT                                             <  NB501016:230:HFVJLAFXY:4:11509:8790:10313/151‑1 (MQ=60)
                                                                                                 GCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGACCTCCTGACCGCCGACCTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTT                                             >  NB501016:230:HFVJLAFXY:2:11204:12508:4100/1‑150 (MQ=60)
                                                                                                            GGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATG                                 >  NB501016:230:HFVJLAFXY:4:11512:20921:16759/1‑151 (MQ=60)
                                                                                                                 GTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGG                            <  NB501016:230:HFVJLAFXY:2:11110:25528:9364/151‑1 (MQ=60)
                                                                                                                   GGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTT                          >  NB501016:230:HFVJLAFXY:4:11602:20206:12051/1‑151 (MQ=60)
                                                                                                                    GGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTT                         >  NB501016:230:HFVJLAFXY:2:21110:18071:11507/1‑151 (MQ=60)
                                                                                                                      ATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTA                                                         >  NB501016:230:HFVJLAFXY:4:11605:15898:15746/1‑117 (MQ=60)
                                                                                                                        AAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATC                     <  NB501016:230:HFVJLAFXY:4:11603:21245:15676/151‑1 (MQ=60)
                                                                                                                              CAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACTAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGG                            <  NB501016:230:HFVJLAFXY:3:21610:24449:20014/138‑1 (MQ=60)
                                                                                                                                      CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAAT                      <  NB501016:230:HFVJLAFXY:2:21203:7622:9364/136‑1 (MQ=60)
                                                                                                                                              ccaCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAAAGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCA  >  NB501016:230:HFVJLAFXY:3:21410:8945:1900/4‑150 (MQ=60)
                                                                                                                                                ACCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGT               >  NB501016:230:HFVJLAFXY:1:11206:19619:2131/1‑135 (MQ=60)
                                                                                                                                                 |                                                                                                                                                  
CAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCA  >  NC_000913/2173218‑2173509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑