Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F72 I0 R1
|
97 |
97.5 |
3322672 |
98.0% |
3256218 |
140.9 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAG > NC_000913/2173216‑2173507
|
AACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCG > NB501016:230:HFVJLAFXY:4:11408:14778:2673/1‑151 (MQ=60)
TTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTATAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTC < NB501016:230:HFVJLAFXY:4:21602:15703:9992/150‑1 (MQ=60)
CCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCC > NB501016:230:HFVJLAFXY:4:21602:15064:18093/1‑151 (MQ=60)
CGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATATAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGC > NB501016:230:HFVJLAFXY:1:11101:7900:15761/1‑151 (MQ=60)
CGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCA < NB501016:230:HFVJLAFXY:4:11411:5016:4205/151‑1 (MQ=60)
actggagttccagacgtgtgctcttccgatcTCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGG < NB501016:230:HFVJLAFXY:1:21307:5598:17478/120‑1 (MQ=60)
CATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGG < NB501016:230:HFVJLAFXY:4:21409:18840:3069/151‑1 (MQ=60)
GCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCA > NB501016:230:HFVJLAFXY:4:11412:24671:12612/1‑150 (MQ=60)
AGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCA < NB501016:230:HFVJLAFXY:4:11606:4709:20172/117‑1 (MQ=60)
CGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATC > NB501016:230:HFVJLAFXY:4:21508:10484:16157/1‑140 (MQ=60)
GGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCG < NB501016:230:HFVJLAFXY:3:11408:7359:19310/151‑1 (MQ=60)
AAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGCTGAGTGGGATAAAAATCAGGCTAGCCGATACCA‑‑CCGCCGTATGTTCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAC < NB501016:230:HFVJLAFXY:1:11311:10558:15814/143‑1 (MQ=60)
AACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTA < NB501016:230:HFVJLAFXY:4:21506:11567:9644/151‑1 (MQ=60)
CACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTA < NB501016:230:HFVJLAFXY:1:11109:25171:15990/151‑1 (MQ=60)
CCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCA > NB501016:230:HFVJLAFXY:4:11511:22013:13322/1‑101 (MQ=60)
TGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGagatcggaagagcacacgtcttgaactccagtcaccgctcattatctcg > NB501016:230:HFVJLAFXY:4:11510:11095:4386/1‑102 (MQ=60)
TGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACG > NB501016:230:HFVJLAFXY:4:21610:5939:19882/1‑149 (MQ=60)
ACCCGGCACACCAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGC < NB501016:230:HFVJLAFXY:2:21109:4797:17017/151‑1 (MQ=60)
CACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGAT > NB501016:230:HFVJLAFXY:2:21210:21664:2235/1‑151 (MQ=60)
CACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAAC < NB501016:230:HFVJLAFXY:4:11412:8976:18959/101‑1 (MQ=60)
ACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATG < NB501016:230:HFVJLAFXY:1:11310:5011:18579/151‑1 (MQ=60)
ACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATG < NB501016:230:HFVJLAFXY:1:21303:22348:15592/151‑1 (MQ=60)
CAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCAGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGCCCAATCAGGAACTCCTGACCGACGAACTTCGCCTGTAACCGACTACCAGCCTCCTTAGCGATGG > NB501016:230:HFVJLAFXY:3:11411:3953:6561/1‑151 (MQ=60)
AAACAGCAATTAAAATGGTGAGTGTGATAAAAATCAGTCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGG < NB501016:230:HFVJLAFXY:2:21207:20608:20147/151‑1 (MQ=60)
AACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGC > NB501016:230:HFVJLAFXY:3:11601:17410:7886/1‑151 (MQ=60)
ACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCG > NB501016:230:HFVJLAFXY:3:21603:21175:1227/1‑151 (MQ=60)
CAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGT > NB501016:230:HFVJLAFXY:4:11605:20827:6923/1‑151 (MQ=60)
GCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTACCAGCAGCAACGCCGGATCAAGTCCATTCAGGAACTCCTGACCCCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGCCGTT > NB501016:230:HFVJLAFXY:3:11603:17548:11841/1‑150 (MQ=60)
CAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCTATACAA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTACTGACCGCCGAACTTCGCCTGTAAACGACTACGAGACTGCTTAGCGATGGGCGTTA > NB501016:230:HFVJLAFXY:3:11505:8346:15268/1‑150 (MQ=60)
ATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAC < NB501016:230:HFVJLAFXY:2:21305:26392:7930/151‑1 (MQ=60)
ATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAC > NB501016:230:HFVJLAFXY:4:21402:3780:16208/1‑151 (MQ=60)
AAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGAAACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCAT > NB501016:230:HFVJLAFXY:2:11301:3429:15677/1‑151 (MQ=60)
ATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCA < NB501016:230:HFVJLAFXY:4:21409:23638:17181/151‑1 (MQ=60)
GGTGCGTGGGATAAAAATCCGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCTATCAGGAACTCCTGACCGCCGAACTGCGCCGGTAAACGACTACGAGCCTGCTTAGCGAAGGGCGTTAAACCATCCATG < NB501016:230:HFVJLAFXY:3:11510:24441:19573/151‑1 (MQ=60)
GAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGAT < NB501016:230:HFVJLAFXY:3:11504:22427:9924/150‑1 (MQ=60)
GTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGG < NB501016:230:HFVJLAFXY:2:21312:21812:6023/151‑1 (MQ=60)
GTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGG > NB501016:230:HFVJLAFXY:2:21305:11411:15027/1‑151 (MQ=60)
GGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTT > NB501016:230:HFVJLAFXY:1:11106:20441:6848/1‑151 (MQ=60)
AAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCACCGCCGGATCAAGGCCAATCAGGAGCTCCTGACCGCCGAACTTCGCCTGTAAACGCCTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCAGGATGGGTTTAATC > NB501016:230:HFVJLAFXY:1:21105:18478:8573/1‑151 (MQ=60)
AAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATC < NB501016:230:HFVJLAFXY:2:21212:10920:11808/151‑1 (MQ=60)
AAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAC < NB501016:230:HFVJLAFXY:1:11104:10286:17598/131‑1 (MQ=60)
AAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGC > NB501016:230:HFVJLAFXY:3:21608:20941:18406/1‑123 (MQ=60)
AGGCTTGCCGATACCA‑‑CCGCCGTATGACCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTG < NB501016:230:HFVJLAFXY:4:11607:5184:19173/151‑1 (MQ=60)
TGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCAT < NB501016:230:HFVJLAFXY:2:11205:19606:6610/150‑1 (MQ=60)
GATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGCTGGGTTTAATCACCCGTGGCATTAGC > NB501016:230:HFVJLAFXY:1:21112:16673:15455/1‑150 (MQ=60)
ATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAG < NB501016:230:HFVJLAFXY:4:11510:2267:7413/151‑1 (MQ=60)
ataccaCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGC > NB501016:230:HFVJLAFXY:2:21205:4470:15378/7‑149 (MQ=60)
CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGG > NB501016:230:HFVJLAFXY:4:21601:22760:20107/1‑35 (MQ=60)
|
AACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAG > NC_000913/2173216‑2173507
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
