Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F75 I0 R1 89 94.9 3159934 98.0% 3096735 144.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCAT  >  NC_000913/2173214‑2173510
                                                                                                                                                     |                                                                                                                                                   
GGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCGC                                                                                                                                                    >  NB501016:230:HFVJLAFXY:1:11202:6484:9574/1‑151 (MQ=60)
            CACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAG                                                                                                                                      <  NB501016:230:HFVJLAFXY:3:21602:10637:15900/151‑1 (MQ=60)
                   CACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAAC                                                                                                                               >  NB501016:230:HFVJLAFXY:2:21209:22253:18853/1‑151 (MQ=60)
                     CGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAG‑ACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCC                                                                                                                            <  NB501016:230:HFVJLAFXY:3:21507:8828:7038/151‑1 (MQ=60)
                          ACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGAT                                                                                                                        >  NB501016:230:HFVJLAFXY:4:21503:20831:1520/1‑151 (MQ=60)
                            CGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATC                                                                                                                       >  NB501016:230:HFVJLAFXY:2:11107:12893:8196/1‑150 (MQ=60)
                              CCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAG                                                                                                                    <  NB501016:230:HFVJLAFXY:3:11608:13403:10357/151‑1 (MQ=60)
                               CATCGCCACGAAGAAGCCGATGGTGGCAAGATCTCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGGAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGGCGTATGTCCCAGCAGCAACGCCGGATCAAGG                                                                                                                   <  NB501016:230:HFVJLAFXY:3:21510:9606:16321/151‑1 (MQ=60)
                               CATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGG                                                                                                                   <  NB501016:230:HFVJLAFXY:1:11305:8358:12803/151‑1 (MQ=60)
                               CATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGG                                                                                                                   >  NB501016:230:HFVJLAFXY:1:11206:15518:3991/1‑151 (MQ=60)
                                      ACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCATATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCA                                                                                                            <  NB501016:230:HFVJLAFXY:3:21601:20974:2513/151‑1 (MQ=60)
                                       CGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCCGCCCCCGATTACCCGGCCCCCAAACAGCAAGTAAAATGGTGAGTGGGAAAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATC                                                                                                             >  NB501016:230:HFVJLAFXY:3:21403:22731:5044/1‑149 (MQ=60)
                                        GAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGTACACAAACAGCAATTAAAATGTTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCTTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGG                                                                                                          <  NB501016:230:HFVJLAFXY:3:21506:15211:17705/151‑1 (MQ=60)
                                         AAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAAC                                                                                                                               >  NB501016:230:HFVJLAFXY:2:11101:9850:17692/1‑129 (MQ=60)
                                             AGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTC                                                                                                     >  NB501016:230:HFVJLAFXY:4:11612:6381:4181/1‑151 (MQ=60)
                                                     GTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGC                                                                                             >  NB501016:230:HFVJLAFXY:2:11205:24172:11001/1‑151 (MQ=60)
                                                          AAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAG                                                                                                           <  NB501016:230:HFVJLAFXY:4:11510:15709:14097/132‑1 (MQ=60)
                                                           AGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACG                                                                                       >  NB501016:230:HFVJLAFXY:3:21511:23508:12989/1‑151 (MQ=60)
                                                                 CCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCT                                                                                 >  NB501016:230:HFVJLAFXY:1:21309:18049:8687/1‑151 (MQ=60)
                                                                  CAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTG                                                                                <  NB501016:230:HFVJLAFXY:2:21210:11561:15662/151‑1 (MQ=60)
                                                                    AACGGCAGCAACTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTA                                                                              <  NB501016:230:HFVJLAFXY:3:21505:5904:8010/151‑1 (MQ=60)
                                                                        GCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACG                                                                          <  NB501016:230:HFVJLAFXY:2:11302:18869:4551/151‑1 (MQ=60)
                                                                           GCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGACCTCCTGACCGCCGAACTTCGCCTGTAAACGACT                                                                       >  NB501016:230:HFVJLAFXY:2:11110:21673:11004/1‑151 (MQ=60)
                                                                            CACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTA                                                                      <  NB501016:230:HFVJLAFXY:2:21204:26006:13416/151‑1 (MQ=60)
                                                                                     ACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGC                                                             >  NB501016:230:HFVJLAFXY:2:21312:12708:4959/1‑151 (MQ=60)
                                                                                         GGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTT                                                           >  NB501016:230:HFVJLAFXY:4:21612:17133:11608/1‑149 (MQ=60)
                                                                                                AAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTATAAACGACTACGAGCCTGCTTAGCGATGGG                                                  <  NB501016:230:HFVJLAFXY:2:21305:2396:5150/151‑1 (MQ=60)
                                                                                                  ACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCG                                                <  NB501016:230:HFVJLAFXY:2:11110:2329:11509/151‑1 (MQ=60)
                                                                                                  ACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACAA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCT                                                                                                   >  NB501016:230:HFVJLAFXY:1:21301:16610:2965/1‑100 (MQ=60)
                                                                                                           AAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCAT                                       >  NB501016:230:HFVJLAFXY:4:21411:11505:3096/1‑151 (MQ=60)
                                                                                                           AAAATGGTCAGTGCGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACATCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCA                                        <  NB501016:230:HFVJLAFXY:1:21311:19367:4335/150‑1 (MQ=60)
                                                                                                             AATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGCACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGA                                                      >  NB501016:230:HFVJLAFXY:1:21309:23208:1180/1‑134 (MQ=60)
                                                                                                              ATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCA                                    <  NB501016:230:HFVJLAFXY:2:21108:3183:7405/151‑1 (MQ=60)
                                                                                                                GGTGAGTGGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATT                                  >  NB501016:230:HFVJLAFXY:1:21302:16067:14982/1‑151 (MQ=60)
                                                                                                                       GGGATAAAAATCAGGCTTGCCGATATCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTT                           <  NB501016:230:HFVJLAFXY:1:21304:26722:16223/151‑1 (MQ=60)
                                                                                                                       GGGATAAAAATCAGGCTTGCCGATATCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTT                           <  NB501016:230:HFVJLAFXY:1:21303:1289:16229/151‑1 (MQ=60)
                                                                                                                       GGGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGT                            <  NB501016:230:HFVJLAFXY:2:11312:18324:9170/150‑1 (MQ=60)
                                                                                                                        GGATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTG                                                                                                  >  NB501016:230:HFVJLAFXY:2:11106:17182:5632/1‑79 (MQ=60)
                                                                                                                          ATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAA                        <  NB501016:230:HFVJLAFXY:2:11309:3586:5429/151‑1 (MQ=60)
                                                                                                                          ATAAAAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTA                         >  NB501016:230:HFVJLAFXY:4:11409:8371:12973/1‑150 (MQ=60)
                                                                                                                              AAATCAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAC                    >  NB501016:230:HFVJLAFXY:4:21510:25640:10121/1‑151 (MQ=60)
                                                                                                                                  CAGGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGT                >  NB501016:230:HFVJLAFXY:2:21304:15194:12408/1‑151 (MQ=60)
                                                                                                                                    GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGG              <  NB501016:230:HFVJLAFXY:3:11608:24232:10742/151‑1 (MQ=60)
                                                                                                                                    GGCTTGCCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGG              <  NB501016:230:HFVJLAFXY:1:11212:9781:5623/151‑1 (MQ=60)
                                                                                                                                          CCGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAG        <  NB501016:230:HFVJLAFXY:4:11508:20845:1661/151‑1 (MQ=60)
                                                                                                                                           CGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGC       <  NB501016:230:HFVJLAFXY:2:21306:20584:12534/151‑1 (MQ=60)
                                                                                                                                           CGATACCA‑‑CCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGC       <  NB501016:230:HFVJLAFXY:4:11404:16540:17667/151‑1 (MQ=60)
                                                                                                                                                  ccaCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTACTCACCCGTGGCATTAGCAGCAT  >  NB501016:230:HFVJLAFXY:1:21111:11738:4522/4‑151 (MQ=60)
                                                                                                                                                  ccaCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACAACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCAT  >  NB501016:230:HFVJLAFXY:3:11407:20130:9189/4‑151 (MQ=60)
                                                                                                                                                     |                                                                                                                                                   
GGAACAGATTTCCACGATGCACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTAGCAGCAT  >  NC_000913/2173214‑2173510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑