Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	102,844	A→G	Q204Q (CAA→CAG)	ddlB →	D‑alanine‑D‑alanine ligase B

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	102,844	0	A	G	99.6%	849.3 / ‑5.4	269	Q204Q (CAA→CAG)	ddlB	D‑alanine‑D‑alanine ligase B
Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (134/134); total (134/135)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.68e-01

Only 100 of 279 total aligned reads displayed.

TGAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAACCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAGA  >  NC_000913/102754‑102933

tGAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGcc                                                                                         <  1:1842255/93‑1 (MQ=255)

tGAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGcc                                                                                         <  1:2663618/93‑1 (MQ=255)

 gaagaaGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCg                                                                                        >  1:1582812/1‑93 (MQ=255)

  aagaagTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGt                                                                                       >  2:4212039/1‑93 (MQ=255)

   agaagTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTc                                                                                      >  1:5721893/1‑93 (MQ=255)

    gaagTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTcc                                                                                     >  2:7352542/1‑93 (MQ=255)

    gaagTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGG‑TGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCg                                                                                    >  2:3439893/1‑93 (MQ=255)

     aagTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCg                                                                                    <  2:4849144/93‑1 (MQ=255)

        tATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGaa                                                                                 >  1:285959/1‑93 (MQ=255)

          ttgattgaAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAAcc                                                                               <  2:1583032/93‑1 (MQ=255)

          ttgattgaAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAAcc                                                                               >  2:5917386/1‑93 (MQ=255)

           tgattgaAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCt                                                                              <  1:616311/93‑1 (MQ=255)

           agattaaAAAACTGATAAGTGGGCCGGAGATCGCGGTGACGATATTCGGTGAAGAAATTTTACCGTAAATACTTATTCAGCCGTCCGGAACCt                                                                              <  2:204017/92‑1 (MQ=255)

            gattgaAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCtt                                                                             >  2:2975374/1‑93 (MQ=255)

            gattgaAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCtt                                                                             >  2:4574457/1‑93 (MQ=255)

            gattgaAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCtt                                                                             >  1:6289672/1‑93 (MQ=255)

             attgaAAAATGGCTAAGTGGGCCGGGGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTc                                                                            >  2:7400825/1‑93 (MQ=255)

             attgaAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTc                                                                            <  2:3824406/93‑1 (MQ=255)

             attgaAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTc                                                                            <  1:2460594/93‑1 (MQ=255)

              ttgaAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCt                                                                           <  1:1928775/93‑1 (MQ=255)

               tgaAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTa                                                                          >  2:115941/1‑93 (MQ=255)

                gaAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTAt                                                                         <  1:3777670/93‑1 (MQ=255)

                gaAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTAt                                                                         <  1:3320246/93‑1 (MQ=255)

                 aaaaaTGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATg                                                                        >  2:6161160/1‑93 (MQ=255)

                  aaaaTGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGa                                                                       <  1:6818128/93‑1 (MQ=255)

                   aaaTGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGAt                                                                      >  2:1694361/1‑93 (MQ=255)

                   aaaTGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGAt                                                                      <  2:5640545/93‑1 (MQ=255)

                    aaTGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGAtt                                                                     >  1:3827696/1‑93 (MQ=255)

                      gggCTATGTGGGCCGGAGTACGCGGTGGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCGGTCCAAAACCTTCTATGATAAt                                                                   <  2:7035030/92‑1 (MQ=255)

                      aggCTTAGTGGGGCGGGGTTCACGGTTGAGATCCTCGGTGAAGAAATTTTACCGTCAATACGTATTCAACCGTCCGGAACCTTCTATGATTAt                                                                   <  1:2578268/92‑1 (MQ=255)

                        gCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGa                                                                 <  2:2492355/93‑1 (MQ=255)

                        gCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGa                                                                 >  1:1750419/1‑93 (MQ=255)

                          tAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAgg                                                               <  1:2726323/93‑1 (MQ=255)

                          tAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAgg                                                               <  1:1278608/93‑1 (MQ=255)

                          tAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAgc                                                               >  1:7674825/1‑92 (MQ=255)

                           aaGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGc                                                              <  2:2278174/93‑1 (MQ=255)

                           aaGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGc                                                              >  2:6427964/1‑93 (MQ=255)

                            aGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCg                                                             >  2:3519768/1‑93 (MQ=255)

                            aGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCg                                                             >  1:5190420/1‑93 (MQ=255)

                             gTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGa                                                            <  2:3893676/93‑1 (MQ=255)

                                ggCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGt                                                         >  1:6988579/1‑93 (MQ=255)

                                 gCCGGATGTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTa                                                        <  1:2766745/93‑1 (MQ=255)

                                 gCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTa                                                        <  1:1790484/93‑1 (MQ=255)

                                 gCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTa                                                        >  2:823806/1‑93 (MQ=255)

                                  caggAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTAt                                                       <  1:5984839/91‑1 (MQ=255)

                                   cGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTAtc                                                      <  2:2550238/93‑1 (MQ=255)

                                   cGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTAtc                                                      <  1:5303752/93‑1 (MQ=255)

                                    ggAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTAtct                                                     >  2:3181021/1‑93 (MQ=255)

                                    ggAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTAtct                                                     >  1:7847049/1‑93 (MQ=255)

                                     gAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTAtctc                                                    >  1:472922/1‑93 (MQ=255)

                                     gAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTAtctc                                                    <  2:5065028/93‑1 (MQ=255)

                                      aGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTAtctct                                                   <  2:5502364/93‑1 (MQ=255)

                                        ttCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATctctct                                                 >  2:7861641/1‑93 (MQ=255)

                                         tCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCtg                                                <  2:7572583/93‑1 (MQ=255)

                                           aCGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCtgat                                              <  2:1279816/93‑1 (MQ=255)

                                             ggTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCtgatga                                            <  2:4491927/93‑1 (MQ=255)

                                             ggTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCtgatga                                            <  2:6658679/93‑1 (MQ=255)

                                              gTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATgag                                           >  1:6427454/1‑93 (MQ=255)

                                              gTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATgag                                           >  2:6238701/1‑93 (MQ=255)

                                              gTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATgag                                           <  1:7094533/93‑1 (MQ=255)

                                                  cGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGacac                                       <  1:4259741/93‑1 (MQ=255)

                                                      aCTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTa                                   >  2:3128331/1‑93 (MQ=255)

                                                       cTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTAt                                  >  1:4565317/1‑93 (MQ=255)

                                                       cTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTAt                                  >  1:1951798/1‑93 (MQ=255)

                                                        tCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTAtt                                 >  2:2932819/1‑93 (MQ=255)

                                                          ggTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTc                               <  1:6530022/93‑1 (MQ=255)

                                                           gTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCt                              <  1:2980167/93‑1 (MQ=255)

                                                           gTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCt                              <  2:4956565/93‑1 (MQ=255)

                                                           gTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCt                              >  1:146661/1‑93 (MQ=255)

                                                             gaagaaATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGc                            >  1:4230803/1‑93 (MQ=255)

                                                              aagaaATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGcc                           <  2:5566173/93‑1 (MQ=255)

                                                               agaaATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGccc                          >  2:7259131/1‑93 (MQ=255)

                                                                gaaATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGcccc                         >  2:7768926/1‑93 (MQ=255)

                                                                gaaATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGcccc                         >  2:6948539/1‑93 (MQ=255)

                                                                gaaATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGcccc                         >  1:5802122/1‑93 (MQ=255)

                                                                 aaaTTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCg                        >  1:7512243/1‑93 (MQ=255)

                                                                  aaTTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGc                       <  1:5077786/93‑1 (MQ=255)

                                                                   aTTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCa                      >  1:3585485/1‑93 (MQ=255)

                                                                   aTTGTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCa                      <  1:6320593/93‑1 (MQ=255)

                                                                    ttttACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAg                     >  2:5206930/1‑93 (MQ=255)

                                                                    ttttACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAg                     >  1:5494975/1‑93 (MQ=255)

                                                                         ccGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTg                <  1:6867459/93‑1 (MQ=255)

                                                                         ccGTCAATACGTATGCAGCCGTCCGGACCCTTCTATGATTATGAGGCTAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTg                <  2:6550667/93‑1 (MQ=255)

                                                                           gTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGa              <  1:7501787/93‑1 (MQ=255)

                                                                            tCAATACGTATTCAGCCGTCCGGAACCTTCTATGA‑TATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAg            >  1:5746362/1‑93 (MQ=255)

                                                                             cAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAg            <  2:5762122/93‑1 (MQ=255)

                                                                             cAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAg            >  1:3082648/1‑93 (MQ=255)

                                                                             cAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTACTGCCCCGCAGGTCTGGAAg            <  2:2409348/93‑1 (MQ=255)

                                                                              aaTACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGc           >  1:935328/1‑93 (MQ=255)

                                                                              aaTACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGc           >  2:276115/1‑93 (MQ=255)

                                                                              aaTACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGc           >  2:4327603/1‑93 (MQ=255)

                                                                                 aCGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTc        <  1:725420/93‑1 (MQ=255)

                                                                                  cGTATTGAGTCGTCTGGAACCTTCTATGATTATGAGGTGAAGTATCTCTGTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTca       <  1:5283259/93‑1 (MQ=255)

                                                                                  cGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTca       >  1:4948193/1‑93 (MQ=255)

                                                                                     aTTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACaa    <  1:5939021/93‑1 (MQ=255)

                                                                                      ttCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAag   >  2:3381868/1‑93 (MQ=255)

                                                                                      ttCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATATCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTcacacg   >  1:5923891/1‑91 (MQ=255)

                                                                                       tCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAaga  <  2:6843552/93‑1 (MQ=255)

                                                                                       tCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAaga  >  1:344670/1‑93 (MQ=255)

                                                                                       tCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAaga  <  2:5391121/93‑1 (MQ=255)

TGAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAACCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAGA  >  NC_000913/102754‑102933

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGATGAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAACCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAGAGGCC  >  NC_000913/102751‑102937

CGATGAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAG                                                                                               >  SRR4302543.3965563/1‑94 (MQ=60)

CGATGAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAC                                                                                               >  SRR4302543.1699054/1‑94 (MQ=60)

 GATGAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGC                                                                                              >  SRR4302543.2144802/1‑94 (MQ=60)

 GATGAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGC                                                                                              >  SRR4302543.1520045/1‑94 (MQ=60)

  ATGAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCC                                                                                             <  SRR4302543.3054721/94‑1 (MQ=60)

  ATGAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCC                                                                                             <  SRR4302543.3745739/94‑1 (MQ=60)

  ATGAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCC                                                                                             <  SRR4302543.2436534/94‑1 (MQ=60)

  ATGAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCC                                                                                             <  SRR4302543.5004310/94‑1 (MQ=60)

   TGAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCG                                                                                            <  SRR4302543.2687769/94‑1 (MQ=60)

   TGAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCG                                                                                            <  SRR4302543.1858826/94‑1 (MQ=60)

   TGAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCG                                                                                            >  SRR4302543.1596940/1‑94 (MQ=60)

   TGAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCG                                                                                            >  SRR4302543.542715/1‑94 (MQ=60)

    GAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGT                                                                                           >  SRR4302543.6508023/1‑94 (MQ=60)

    GAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGT                                                                                           >  SRR4302543.7624079/1‑94 (MQ=60)

     AAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTC                                                                                          >  SRR4302543.5774103/1‑94 (MQ=60)

     AAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTC                                                                                          >  SRR4302543.5774104/1‑94 (MQ=60)

     AAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTC                                                                                          >  SRR4302543.6042805/1‑94 (MQ=60)

      AGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCC                                                                                         <  SRR4302543.4295685/94‑1 (MQ=60)

         AGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGA                                                                                      >  SRR4302543.5847814/1‑94 (MQ=60)

          GTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAA                                                                                     >  SRR4302543.288502/1‑94 (MQ=60)

           TATTGATTGAAAAATGGCTAAGTGTGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAAC                                                                                    <  SRR4302543.5431538/94‑1 (MQ=60)

           TATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAAC                                                                                    <  SRR4302543.6021798/94‑1 (MQ=60)

            ATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACC                                                                                   <  SRR4302543.1913070/94‑1 (MQ=60)

             TTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCT                                                                                  <  SRR4302543.2792603/94‑1 (MQ=60)

             TTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCT                                                                                  >  SRR4302543.2747605/1‑94 (MQ=60)

             TTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCT                                                                                  <  SRR4302543.7638873/94‑1 (MQ=60)

              TGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTT                                                                                 <  SRR4302543.5090361/94‑1 (MQ=60)

              TGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTT                                                                                 <  SRR4302543.621948/94‑1 (MQ=60)

              TGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTT                                                                                 >  SRR4302543.6348901/1‑94 (MQ=60)

                ATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGACGGAAGTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCT                                                                               >  SRR4302543.3891457/1‑94 (MQ=60)

                ATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCT                                                                               <  SRR4302543.2482776/94‑1 (MQ=60)

                 TTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTA                                                                              <  SRR4302543.5839383/94‑1 (MQ=60)

                 TTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTA                                                                              <  SRR4302543.1946140/94‑1 (MQ=60)

                 TTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTA                                                                              >  SRR4302543.5028733/1‑94 (MQ=60)

                  TGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTAT                                                                             <  SRR4302543.4014881/94‑1 (MQ=60)

                   GAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATG                                                                            <  SRR4302543.3350206/94‑1 (MQ=60)

                   GAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATG                                                                            <  SRR4302543.3810928/94‑1 (MQ=60)

                    AAAAATGGCTAAGTGGGCCGGAGCTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGA                                                                           >  SRR4302543.5327503/1‑94 (MQ=60)

                     AAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGAT                                                                          >  SRR4302543.3787045/1‑94 (MQ=60)

                     AAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGAT                                                                          <  SRR4302543.6882496/94‑1 (MQ=60)

                     AAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGAT                                                                          <  SRR4302543.5738193/94‑1 (MQ=60)

                      AAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATT                                                                         >  SRR4302543.3861462/1‑94 (MQ=60)

                      AAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATT                                                                         <  SRR4302543.4938206/94‑1 (MQ=60)

                        ATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTAT                                                                       <  SRR4302543.6749128/94‑1 (MQ=60)

                        ATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTAT                                                                       <  SRR4302543.2954864/94‑1 (MQ=60)

                         AGGCTTAGTGGGGCGGGGTTCACGGTTGAGATCCTCGGTGAAGAAATTTTACCGTCAATACGTATTCAACCGTCCGGAACCTTCTATGATTATG                                                                      <  SRR4302543.2601754/94‑1 (MQ=60)

                          GGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGA                                                                     >  SRR4302543.1766052/1‑94 (MQ=60)

                          GGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGA                                                                     >  SRR4302543.520341/1‑94 (MQ=60)

                          GGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGA                                                                     <  SRR4302543.4449346/94‑1 (MQ=60)

                           GCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAG                                                                    <  SRR4302543.3419541/94‑1 (MQ=60)

                           GCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAG                                                                    <  SRR4302543.3238091/94‑1 (MQ=60)

                            CTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGC                                                                   >  SRR4302543.7747537/1‑94 (MQ=60)

                             TAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGC                                                                  <  SRR4302543.2751127/94‑1 (MQ=60)

                             TAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGC                                                                  <  SRR4302543.1290012/94‑1 (MQ=60)

                              AAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCG                                                                 >  SRR4302543.5237229/1‑94 (MQ=60)

                              AAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCG                                                                 <  SRR4302543.3502509/94‑1 (MQ=60)

                               AGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGA                                                                >  SRR4302543.658522/1‑94 (MQ=60)

                                 TGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAG                                                              <  SRR4302543.1536927/94‑1 (MQ=60)

                                  GGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGT                                                             >  SRR4302543.7054349/1‑94 (MQ=60)

                                  GGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGT                                                             <  SRR4302543.2787028/94‑1 (MQ=60)

                                  GGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGT                                                             >  SRR4302543.5914766/1‑94 (MQ=60)

                                    GCCGGATGTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTAT                                                           <  SRR4302543.2791924/94‑1 (MQ=60)

                                    GCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTAT                                                           <  SRR4302543.1806508/94‑1 (MQ=60)

                                    GCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTAT                                                           <  SRR4302543.6279288/94‑1 (MQ=60)

                                     CAGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATC                                                          <  SRR4302543.6039676/94‑1 (MQ=60)

                                      CGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCT                                                         >  SRR4302543.7921005/1‑94 (MQ=60)

                                      CGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCT                                                         >  SRR4302543.3901599/1‑94 (MQ=60)

                                      CGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCT                                                         <  SRR4302543.5351636/94‑1 (MQ=60)

                                      CGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCT                                                         <  SRR4302543.5351633/94‑1 (MQ=60)

                                       GGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTC                                                        >  SRR4302543.477299/1‑94 (MQ=60)

                                        GAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCT                                                       <  SRR4302543.2768203/94‑1 (MQ=60)

                                         AGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTC                                                      >  SRR4302543.1769763/1‑94 (MQ=60)

                                             CACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGAT                                                  <  SRR4302543.2696570/94‑1 (MQ=60)

                                             CACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGAT                                                  <  SRR4302543.7290805/94‑1 (MQ=60)

                                              ACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATG                                                 <  SRR4302543.3324937/94‑1 (MQ=60)

                                                GGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAG                                               >  SRR4302543.6488017/1‑94 (MQ=60)

                                                GGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAG                                               >  SRR4302543.4279208/1‑94 (MQ=60)

                                                GGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAG                                               <  SRR4302543.805016/94‑1 (MQ=60)

                                                 GTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGA                                              <  SRR4302543.7163427/94‑1 (MQ=60)

                                                   TGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACA                                            >  SRR4302543.2970220/1‑94 (MQ=60)

                                                     CGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACA                                          <  SRR4302543.4298422/94‑1 (MQ=60)

                                                     CGATACTCGGTGAAGAAATTTTAACGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACA                                          >  SRR4302543.431203/1‑94 (MQ=60)

                                                       ATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGT                                        <  SRR4302543.3672215/94‑1 (MQ=60)

                                                         ACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTAT                                      >  SRR4302543.4606857/1‑94 (MQ=60)

                                                         ACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTAT                                      >  SRR4302543.6885932/1‑94 (MQ=60)

                                                         ACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTAT                                      >  SRR4302543.1969303/1‑94 (MQ=60)

                                                          CTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATT                                     >  SRR4302543.7098369/1‑94 (MQ=60)

                                                          CTCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATT                                     <  SRR4302543.7581582/94‑1 (MQ=60)

                                                           TCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTT                                    <  SRR4302543.3450653/94‑1 (MQ=60)

                                                           TCGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTT                                    <  SRR4302543.605598/94‑1 (MQ=60)

                                                            CGGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTC                                   >  SRR4302543.2620278/1‑94 (MQ=60)

                                                             GGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCT                                  <  SRR4302543.5782796/94‑1 (MQ=60)

                                                             GGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCT                                  >  SRR4302543.2543694/1‑94 (MQ=60)

                                                             GGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCT                                  <  SRR4302543.6310715/94‑1 (MQ=60)

                                                             GGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCT                                  <  SRR4302543.1953309/94‑1 (MQ=60)

                                                             GGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCT                                  <  SRR4302543.1963484/94‑1 (MQ=60)

                                                             GGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCT                                  >  SRR4302543.147937/1‑94 (MQ=60)

                                                             GGTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCT                                  <  SRR4302543.6591506/94‑1 (MQ=60)

                                                              GTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTG                                 <  SRR4302543.3007233/94‑1 (MQ=60)

                                                              GTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTG                                 <  SRR4302543.3007232/94‑1 (MQ=60)

                                                              GTGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTG                                 <  SRR4302543.2498429/94‑1 (MQ=60)

                                                               TGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGC                                >  SRR4302543.843258/1‑94 (MQ=60)

                                                               TGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGC                                >  SRR4302543.4269179/1‑94 (MQ=60)

                                                               TGAAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGC                                >  SRR4302543.6810124/1‑94 (MQ=60)

                                                                 AAGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCC                              >  SRR4302543.2056311/1‑94 (MQ=60)

                                                                  AGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCC                             >  SRR4302543.5854892/1‑94 (MQ=60)

                                                                  AGAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCC                             >  SRR4302543.356621/1‑94 (MQ=60)

                                                                   GAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCG                            >  SRR4302543.1482277/1‑94 (MQ=60)

                                                                   GAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCG                            >  SRR4302543.7583999/1‑94 (MQ=60)

                                                                   GAAATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCG                            >  SRR4302543.7562977/1‑94 (MQ=60)

                                                                     AATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCA                          <  SRR4302543.5123855/94‑1 (MQ=60)

                                                                     AATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCA                          >  SRR4302543.3617157/1‑94 (MQ=60)

                                                                     AATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCA                          <  SRR4302543.6437821/94‑1 (MQ=60)

                                                                      ATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAG                         >  SRR4302543.5544817/1‑94 (MQ=60)

                                                                      ATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAG                         <  SRR4302543.6380028/94‑1 (MQ=60)

                                                                      ATTTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAG                         <  SRR4302543.1721453/94‑1 (MQ=60)

                                                                      ATTGTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAG                         <  SRR4302543.6380029/94‑1 (MQ=60)

                                                                        TTTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGATACAGTATTTCTGCCCCGCAGGT                       >  SRR4302543.7098682/1‑94 (MQ=60)

                                                                         TTACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTC                      >  SRR4302543.5254541/1‑94 (MQ=60)

                                                                          TACCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCT                     <  SRR4302543.7861100/94‑1 (MQ=60)

                                                                            CCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGG                   >  SRR4302543.7050773/1‑94 (MQ=60)

                                                                            CCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGG                   <  SRR4302543.6932149/94‑1 (MQ=60)

                                                                            CCGTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGG                   >  SRR4302543.7528945/1‑94 (MQ=60)

                                                                             CGTCAATACGTATTCATCCGTCCGGAAGCGTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGA                  <  SRR4302543.2877681/94‑1 (MQ=60)

                                                                              GTCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAA                 <  SRR4302543.7573515/94‑1 (MQ=60)

                                                                              GTCAATACGTATTCAGCCGTCCGGAACCTTCTATGA‑TATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAG                >  SRR4302543.5798738/1‑94 (MQ=60)

                                                                               TCAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAG                >  SRR4302543.3110369/1‑94 (MQ=60)

                                                                                CAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACTGTATTTCTGCCCCGCAGGTCTGGAAGC               <  SRR4302543.1863753/94‑1 (MQ=60)

                                                                                CAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGC               <  SRR4302543.1665915/94‑1 (MQ=60)

                                                                                CAATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGC               >  SRR4302543.943500/1‑94 (MQ=60)

                                                                                 AATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCG              >  SRR4302543.478715/1‑94 (MQ=60)

                                                                                  ATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGT             <  SRR4302543.6013000/94‑1 (MQ=60)

                                                                                  ATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGT             <  SRR4302543.7767154/94‑1 (MQ=60)

                                                                                  ATACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGT             >  SRR4302543.5141540/1‑94 (MQ=60)

                                                                                    ACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCA           >  SRR4302543.7289342/1‑94 (MQ=60)

                                                                                    ACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCA           >  SRR4302543.4993253/1‑94 (MQ=60)

                                                                                    ACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCA           <  SRR4302543.731946/94‑1 (MQ=60)

                                                                                    ACGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTAA           >  SRR4302543.5986043/1‑94 (MQ=60)

                                                                                     CGTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCAC          >  SRR4302543.1767614/1‑94 (MQ=60)

                                                                                      GTATTCAGCTGTCCGGAACATTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACA         <  SRR4302543.6466346/94‑1 (MQ=60)

                                                                                      GTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACA         <  SRR4302543.693175/94‑1 (MQ=60)

                                                                                      GTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACA         >  SRR4302543.1807378/1‑94 (MQ=60)

                                                                                      GTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACA         >  SRR4302543.3819364/1‑94 (MQ=60)

                                                                                      GTATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACA         >  SRR4302543.4692288/1‑94 (MQ=60)

                                                                                        ATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAG       <  SRR4302543.1333572/94‑1 (MQ=60)

                                                                                        ATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAG       <  SRR4302543.5993360/94‑1 (MQ=60)

                                                                                        ATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAG       <  SRR4302543.5993355/94‑1 (MQ=60)

                                                                                        ATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAG       <  SRR4302543.5750135/94‑1 (MQ=60)

                                                                                        ATTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATATCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACACG       >  SRR4302543.5978020/1‑94 (MQ=60)

                                                                                         TTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAGA      >  SRR4302543.347858/1‑94 (MQ=60)

                                                                                         TTCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAGA      >  SRR4302543.983763/1‑94 (MQ=60)

                                                                                          TCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAGAG     <  SRR4302543.2240243/94‑1 (MQ=60)

                                                                                          TCAGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCCGGAAGCGTCACAAGAG     >  SRR4302543.2115345/1‑94 (MQ=60)

                                                                                            AGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAGAGGC   <  SRR4302543.514670/94‑1 (MQ=60)

                                                                                            AGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAGAGGC   >  SRR4302543.4099129/1‑94 (MQ=60)

                                                                                            AGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAGAGGC   >  SRR4302543.2686174/1‑94 (MQ=60)

                                                                                            AGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAGAGGC   >  SRR4302543.2577327/1‑94 (MQ=60)

                                                                                            AGCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAGAGGC   >  SRR4302543.1455353/1‑94 (MQ=60)

                                                                                             GCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAGAGGCC  <  SRR4302543.5149315/94‑1 (MQ=60)

                                                                                             GCCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAGAGGCC  <  SRR4302543.5149314/94‑1 (MQ=60)

CGATGAAGAAGTATTGATTGAAAAATGGCTAAGTGGGCCGGAGTTCACGGTTGCGATACTCGGTGAAGAAATTTTACCGTCAATACGTATTCAACCGTCCGGAACCTTCTATGATTATGAGGCGAAGTATCTCTCTGATGAGACACAGTATTTCTGCCCCGCAGGTCTGGAAGCGTCACAAGAGGCC  >  NC_000913/102751‑102937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`