Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,963,691 G→A A175A (GCC→GCT)  flhB ← FlhB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,963,6910GA100.0% 691.3 / NA 192A175A (GCC→GCT) flhBFlhB
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (98/94);  total (98/94)

Only 100 of 194 total aligned reads displayed.

TCCCACCATTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCGGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCTTTAAG  >  NC_000913/1963601‑1963780
                                                                                          |                                                                                         
tCCCACCATTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGc                                                                                         >  2:4249187/1‑93 (MQ=255)
    accaTTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATc                                                                                     >  2:7881359/1‑93 (MQ=255)
      caTGGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCGACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCaa                                                                                   <  2:4020297/93‑1 (MQ=255)
       aTTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAg                                                                                  >  2:708485/1‑93 (MQ=255)
       aTTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAAACCATCGAATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAg                                                                                  <  1:7001954/93‑1 (MQ=255)
        ttGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAgc                                                                                 <  2:870335/93‑1 (MQ=255)
        ttGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAgc                                                                                 >  1:970998/1‑93 (MQ=255)
        ttGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAgc                                                                                 <  1:1621535/93‑1 (MQ=255)
         tGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAgcg                                                                                <  1:6344046/93‑1 (MQ=255)
         tGGAATGACACCAAGAACCACCAGCAGTGCGCATAGCCCTACCAAATCCATTGCATTACCCATGGCGGTCATCGGAGACTCAGCCATCAAgcc                                                                                >  2:6588805/1‑92 (MQ=255)
            aaTGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGcat                                                                             >  2:111385/1‑93 (MQ=255)
            aaTGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGcat                                                                             <  1:212396/93‑1 (MQ=255)
             aTGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGcatc                                                                            >  2:6084261/1‑93 (MQ=255)
             aTGACACCAAGCACAACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGAGcatc                                                                            >  2:2891431/1‑93 (MQ=255)
              tGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGcatca                                                                           >  2:2513668/1‑93 (MQ=255)
              tGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGcatca                                                                           <  1:2995532/93‑1 (MQ=255)
              tGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGcatca                                                                           >  2:3786779/1‑93 (MQ=255)
                acacCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCatcatc                                                                         <  1:4271594/93‑1 (MQ=255)
                acacCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCatcatc                                                                         <  1:5907876/93‑1 (MQ=255)
                acacCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCatcatc                                                                         <  1:3613262/93‑1 (MQ=255)
                acacCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCatcatc                                                                         <  2:4345858/93‑1 (MQ=255)
                  acCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTg                                                                       >  1:6190620/1‑93 (MQ=255)
                  acCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTg                                                                       <  2:674272/93‑1 (MQ=255)
                   ccAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGc                                                                      <  1:6647007/93‑1 (MQ=255)
                    cAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCg                                                                     <  1:2052895/93‑1 (MQ=255)
                    cAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCg                                                                     <  1:1856845/93‑1 (MQ=255)
                     aaGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCgg                                                                    >  2:4981890/1‑93 (MQ=255)
                       gCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGcc                                                                  >  1:5578376/1‑93 (MQ=255)
                        caccacCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCa                                                                 <  1:7374531/93‑1 (MQ=255)
                        caccacCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCa                                                                 <  1:1732555/93‑1 (MQ=255)
                         accaccAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAg                                                                >  1:4555761/1‑93 (MQ=255)
                         accaccAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAg                                                                >  1:43660/1‑93 (MQ=255)
                            gccaGCAGTGCGCAAAGCCCTACCAAATCCATCGCATTACCCATGGCGGAAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGa                                                             <  2:3893791/92‑1 (MQ=255)
                            accaGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGa                                                             <  1:5427693/93‑1 (MQ=255)
                             ccaGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGCCTCAGCCATCAAGCGCATCATCTGCGGCCAGTGAt                                                            >  2:5278263/1‑93 (MQ=255)
                             ccaGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGAt                                                            >  1:2341352/1‑93 (MQ=255)
                             ccaGCAGTGCACATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGAt                                                            >  1:1688626/1‑93 (MQ=255)
                              cagcagTGCGCAAAGCCCTACCAAATCAATCGAATACCCAATGGC‑GTTATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGc                                                          <  1:3763997/93‑1 (MQ=255)
                               agcagTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGc                                                          <  1:917727/93‑1 (MQ=255)
                                gcagTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGcc                                                         >  2:5005610/1‑93 (MQ=255)
                                gcagTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGcc                                                         >  2:340822/1‑93 (MQ=255)
                                   gTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCaga                                                      <  1:7799280/93‑1 (MQ=255)
                                     gcgcATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAgaga                                                    >  1:3241530/1‑93 (MQ=255)
                                           aGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAAc                                              >  2:6912353/1‑93 (MQ=255)
                                            gCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAAcc                                             >  1:3805185/1‑93 (MQ=255)
                                               cTACCAAATCCATCGCATTACCCATGGCGGTCATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAACCCCCg                                          >  1:6565858/1‑93 (MQ=255)
                                               cTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCg                                          >  2:5156266/1‑93 (MQ=255)
                                               cTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCg                                          >  2:3254445/1‑93 (MQ=255)
                                                tACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGt                                         >  1:3420265/1‑93 (MQ=255)
                                                caCCAAATCCATCGCATTACCCATGGCGGTAATCTGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGt                                         <  1:1110526/92‑1 (MQ=255)
                                                caCCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGt                                         <  1:5719900/92‑1 (MQ=255)
                                                 aCCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTc                                        >  1:554013/1‑93 (MQ=255)
                                                 aCCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTc                                        <  1:7863334/93‑1 (MQ=255)
                                                  ccAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCa                                       >  1:4581462/1‑93 (MQ=255)
                                                  ccAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCa                                       >  2:3353536/1‑93 (MQ=255)
                                                  ccAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCa                                       >  1:53104/1‑93 (MQ=255)
                                                   cAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCAc                                      >  1:2523479/1‑93 (MQ=255)
                                                    aaaTCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACg                                     >  2:2051630/1‑93 (MQ=255)
                                                    aaaTCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACg                                     >  1:3892137/1‑93 (MQ=255)
                                                     aaTCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGc                                    <  1:271051/93‑1 (MQ=255)
                                                     aaTCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGc                                    <  2:2303899/93‑1 (MQ=255)
                                                     aaTCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGc                                    <  2:1433439/93‑1 (MQ=255)
                                                        ccATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGGCAGGGATGCCAGAGAAAAAACCCCGTCACGCTGc                                 >  2:6675787/1‑93 (MQ=255)
                                                        ccATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGc                                 >  1:1195066/1‑93 (MQ=255)
                                                         cATCGCATTACCCATGGCGGTAATCGGAGACGCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGcc                                <  1:1306043/93‑1 (MQ=255)
                                                          aTCGCATTACCCATTGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACACCGTCACGCTGCCa                               >  1:3227374/1‑93 (MQ=255)
                                                            cGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAAc                             <  1:4644718/93‑1 (MQ=255)
                                                            cGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAAc                             <  2:610847/93‑1 (MQ=255)
                                                            cGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAAc                             >  2:7688458/1‑93 (MQ=255)
                                                             gCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAAcc                            <  2:3013605/93‑1 (MQ=255)
                                                               aTTCCCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAg                          <  1:1420306/93‑1 (MQ=255)
                                                               aTTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAg                          >  1:58383/1‑93 (MQ=255)
                                                               aTTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAg                          >  1:4143468/1‑93 (MQ=255)
                                                               aTTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAg                          <  2:2192896/93‑1 (MQ=255)
                                                               aTTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAg                          <  1:7405904/93‑1 (MQ=255)
                                                                ttACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAgg                         >  2:4434187/1‑93 (MQ=255)
                                                                  aCCCATTGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCCGCCAACCAGGAt                       <  2:4947284/93‑1 (MQ=255)
                                                                  aCCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGAt                       <  1:6862081/93‑1 (MQ=255)
                                                                  aCCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCCGCCAACCAGGAt                       <  2:7484384/93‑1 (MQ=255)
                                                                   cccATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATg                      >  1:7926215/1‑93 (MQ=255)
                                                                    ccATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATgg                     >  2:6174990/1‑93 (MQ=255)
                                                                    ccATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATgg                     >  1:4975135/1‑93 (MQ=255)
                                                                    ccATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATgg                     >  2:32900/1‑93 (MQ=255)
                                                                     cATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGt                    <  2:5413706/93‑1 (MQ=255)
                                                                      aTGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGtt                   >  2:6456028/1‑93 (MQ=255)
                                                                      aTGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGtt                   >  2:2703606/1‑93 (MQ=255)
                                                                       tGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGttt                  >  2:1698317/1‑93 (MQ=255)
                                                                         gCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTc                <  1:2451721/93‑1 (MQ=255)
                                                                            gTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCaaa             <  2:1271908/93‑1 (MQ=255)
                                                                             tAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCaaaa            <  2:1029760/93‑1 (MQ=255)
                                                                             tAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCaaaa            <  2:2413573/93‑1 (MQ=255)
                                                                               aTCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAAtt          >  1:1069657/1‑93 (MQ=255)
                                                                                tCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGGTTTCTAAATTg         >  2:3702907/1‑93 (MQ=255)
                                                                                  ggAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCt       <  2:5860839/93‑1 (MQ=255)
                                                                                  ggAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCt       <  2:721896/93‑1 (MQ=255)
                                                                                   gagaCTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCtt      <  1:5456846/93‑1 (MQ=255)
                                                                                    agaCTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCttt     <  2:4673583/93‑1 (MQ=255)
                                                                                      aCTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCTTTaa   <  2:1986684/93‑1 (MQ=255)
                                                                                      aCTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCTTTaa   <  2:510774/93‑1 (MQ=255)
                                                                                       cTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCTTTAAg  >  1:824397/1‑93 (MQ=255)
                                                                                          |                                                                                         
TCCCACCATTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCGGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCTTTAAG  >  NC_000913/1963601‑1963780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAATCCCACCATTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCGGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCTTTAAGCA  >  NC_000913/1963598‑1963782
                                                                                             |                                                                                           
AAATCCCACCATTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCA                                                                                             >  SRR4302543.3027081/1‑94 (MQ=60)
AAATCCCACCATTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCA                                                                                             <  SRR4302543.4874573/94‑1 (MQ=60)
AAATCCCACCATTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCA                                                                                             <  SRR4302543.5517580/94‑1 (MQ=60)
AAATCCCACCATTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCA                                                                                             >  SRR4302543.6040812/1‑94 (MQ=60)
 AATCCCACCATTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAG                                                                                            <  SRR4302543.3949495/94‑1 (MQ=60)
     CCACCATTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCAT                                                                                        >  SRR4302543.4655045/1‑94 (MQ=60)
     CCACCATTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCAC                                                                                        >  SRR4302543.4313824/1‑94 (MQ=60)
       ACCATTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCA                                                                                      <  SRR4302543.3538009/94‑1 (MQ=60)
       ACCATTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCA                                                                                      <  SRR4302543.4503653/94‑1 (MQ=60)
        CCATTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAA                                                                                     >  SRR4302543.8000888/1‑94 (MQ=60)
          ATTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGC                                                                                   >  SRR4302543.979536/1‑94 (MQ=60)
          ATTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAAACCATCGAATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGC                                                                                   <  SRR4302543.7068374/94‑1 (MQ=60)
           TTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCG                                                                                  <  SRR4302543.1635985/94‑1 (MQ=60)
           TTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCG                                                                                  >  SRR4302543.2106764/1‑94 (MQ=60)
            TGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGC                                                                                 <  SRR4302543.3666496/94‑1 (MQ=60)
            TGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGC                                                                                 <  SRR4302543.6403705/94‑1 (MQ=60)
             GGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCA                                                                                <  SRR4302543.589763/94‑1 (MQ=60)
               AATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATC                                                                              <  SRR4302543.214212/94‑1 (MQ=60)
                ATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCA                                                                             >  SRR4302543.70569/1‑94 (MQ=60)
                 TGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCAT                                                                            <  SRR4302543.3022709/94‑1 (MQ=60)
                   ACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCT                                                                          <  SRR4302543.3645121/94‑1 (MQ=60)
                   ACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCT                                                                          <  SRR4302543.5961804/94‑1 (MQ=60)
                   ACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCT                                                                          <  SRR4302543.4310412/94‑1 (MQ=60)
                    CACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTG                                                                         >  SRR4302543.6249104/1‑94 (MQ=60)
                     ACCAAGCACCGCCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGC                                                                        <  SRR4302543.414221/94‑1 (MQ=60)
                     ACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGC                                                                        <  SRR4302543.98314/94‑1 (MQ=60)
                      CCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCG                                                                       <  SRR4302543.6709747/94‑1 (MQ=60)
                       CAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGG                                                                      <  SRR4302543.2071270/94‑1 (MQ=60)
                       CAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGG                                                                      <  SRR4302543.1873536/94‑1 (MQ=60)
                         AGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCC                                                                    >  SRR4302543.5629159/1‑94 (MQ=60)
                           CACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAG                                                                  >  SRR4302543.4597241/1‑94 (MQ=60)
                           CACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAG                                                                  <  SRR4302543.3803428/94‑1 (MQ=60)
                           CACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAG                                                                  >  SRR4302543.44063/1‑94 (MQ=60)
                           CACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAG                                                                  <  SRR4302543.7445426/94‑1 (MQ=60)
                           CACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAG                                                                  <  SRR4302543.7445425/94‑1 (MQ=60)
                           CACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAG                                                                  <  SRR4302543.1747998/94‑1 (MQ=60)
                            ACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCCGT                                                                 >  SRR4302543.1746229/1‑94 (MQ=60)
                               CCCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGAT                                                              <  SRR4302543.7880390/94‑1 (MQ=60)
                               ACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGAT                                                              >  SRR4302543.2362593/1‑94 (MQ=60)
                               ACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGAT                                                              <  SRR4302543.5477017/94‑1 (MQ=60)
                               ACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGAT                                                              >  SRR4302543.7980517/1‑94 (MQ=60)
                               ACCAGCAGTGCACATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGAT                                                              >  SRR4302543.1703786/1‑94 (MQ=60)
                                CCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATG                                                             >  SRR4302543.1776662/1‑94 (MQ=60)
                                CCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATG                                                             <  SRR4302543.6334703/94‑1 (MQ=60)
                                 CAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGC                                                            <  SRR4302543.1463047/94‑1 (MQ=60)
                                 CAGCAGTGCGCAAAGCCCTACCAAATCAATCGAATACCCAATGGC‑GTTATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCC                                                           <  SRR4302543.3797126/94‑1 (MQ=48)
                                  AGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCC                                                           <  SRR4302543.925766/94‑1 (MQ=60)
                                    CAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAG                                                         <  SRR4302543.525828/94‑1 (MQ=60)
                                      GTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAG                                                       <  SRR4302543.7872778/94‑1 (MQ=60)
                                       TGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGA                                                      >  SRR4302543.3270850/1‑94 (MQ=60)
                                          GCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAA                                                   <  SRR4302543.3882650/94‑1 (MQ=60)
                                           CATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAA                                                  <  SRR4302543.2023581/94‑1 (MQ=60)
                                              AGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACC                                               >  SRR4302543.3838721/1‑94 (MQ=60)
                                                CCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCC                                             <  SRR4302543.5499759/94‑1 (MQ=60)
                                                 CCTACCAAATCCATCGCATTACCCATGGCGGTCATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAACCCCCG                                            >  SRR4302543.6627643/1‑94 (MQ=60)
                                                  CTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGT                                           >  SRR4302543.3450875/1‑94 (MQ=60)
                                                   TACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTC                                          >  SRR4302543.559103/1‑94 (MQ=60)
                                                   CACCAAATCCATCGCATTACCCATGGCGGTAATCTGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTC                                          <  SRR4302543.1120548/94‑1 (MQ=60)
                                                   CACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATTCCAGAGAAAAAACCCCGTC                                          <  SRR4302543.5798361/94‑1 (MQ=60)
                                                   CACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTC                                          <  SRR4302543.5772093/94‑1 (MQ=60)
                                                    ACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCA                                         >  SRR4302543.6732029/1‑94 (MQ=60)
                                                    ACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCA                                         >  SRR4302543.53574/1‑94 (MQ=60)
                                                    ACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCA                                         >  SRR4302543.4623094/1‑94 (MQ=60)
                                                    ACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCA                                         <  SRR4302543.7937387/94‑1 (MQ=60)
                                                     CCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCAC                                        >  SRR4302543.2546422/1‑94 (MQ=60)
                                                      CAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACG                                       >  SRR4302543.3926500/1‑94 (MQ=60)
                                                        AATCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCT                                     <  SRR4302543.273436/94‑1 (MQ=60)
                                                          TCCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGC                                   >  SRR4302543.1205841/1‑94 (MQ=60)
                                                           CCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCC                                  >  SRR4302543.3348487/1‑94 (MQ=60)
                                                           CCATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCC                                  >  SRR4302543.6610568/1‑94 (MQ=60)
                                                            CATCGCATTACCCATTGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACACCGTCACGCTGCCA                                 >  SRR4302543.3256555/1‑94 (MQ=60)
                                                            CATCGCATTACCCATGGCGGTAATCGGAGACGCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCA                                 <  SRR4302543.1317642/94‑1 (MQ=60)
                                                             ATCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAA                                <  SRR4302543.131112/94‑1 (MQ=60)
                                                              TCGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAAC                               <  SRR4302543.419618/94‑1 (MQ=60)
                                                               CGCATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACC                              <  SRR4302543.4686981/94‑1 (MQ=60)
                                                                 CATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAG                            >  SRR4302543.2530524/1‑94 (MQ=60)
                                                                 CATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAG                            >  SRR4302543.58897/1‑94 (MQ=60)
                                                                 CATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAG                            >  SRR4302543.4180896/1‑94 (MQ=60)
                                                                 CATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAG                            >  SRR4302543.6124975/1‑94 (MQ=60)
                                                                  ATTCCCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGG                           <  SRR4302543.1433161/94‑1 (MQ=60)
                                                                  ATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGG                           <  SRR4302543.7476979/94‑1 (MQ=60)
                                                                  ATTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGG                           <  SRR4302543.1640211/94‑1 (MQ=60)
                                                                   TTACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGA                          <  SRR4302543.4950452/94‑1 (MQ=60)
                                                                     ACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATG                        <  SRR4302543.6926747/94‑1 (MQ=60)
                                                                     ACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATG                        <  SRR4302543.6682683/94‑1 (MQ=60)
                                                                     ACCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATG                        >  SRR4302543.8000647/1‑94 (MQ=60)
                                                                      CCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGG                       >  SRR4302543.138286/1‑94 (MQ=60)
                                                                      CCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGG                       <  SRR4302543.5530156/94‑1 (MQ=60)
                                                                      CCCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGG                       >  SRR4302543.5020421/1‑94 (MQ=60)
                                                                       CCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGT                      <  SRR4302543.271612/94‑1 (MQ=60)
                                                                       CCATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGT                      >  SRR4302543.2216389/1‑94 (MQ=60)
                                                                         ATGGCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTT                    >  SRR4302543.7160428/1‑94 (MQ=60)
                                                                            GCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCA                 >  SRR4302543.895083/1‑94 (MQ=60)
                                                                            GCGGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCA                 <  SRR4302543.2473838/94‑1 (MQ=60)
                                                                              GGTAATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAA               >  SRR4302543.7633915/1‑94 (MQ=60)
                                                                                 AATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATT            >  SRR4302543.5434692/1‑94 (MQ=60)
                                                                                 AATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATT            >  SRR4302543.1079272/1‑94 (MQ=60)
                                                                                  ATCGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTG           >  SRR4302543.2383335/1‑94 (MQ=60)
                                                                                    CGGAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCGGCCAACCAGGATGGTTTTCAAAATTGCT         >  SRR4302543.2781777/1‑94 (MQ=60)
                                                                                      GAGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCTTT       <  SRR4302543.5506316/94‑1 (MQ=60)
                                                                                       AGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCTTTA      <  SRR4302543.1156482/94‑1 (MQ=60)
                                                                                       AGACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCTTTA      <  SRR4302543.3224728/94‑1 (MQ=60)
                                                                                        GACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCTTTAA     <  SRR4302543.5648163/94‑1 (MQ=60)
                                                                                         ACTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCTTTAAG    >  SRR4302543.831666/1‑94 (MQ=60)
                                                                                          CTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCTTTAAGC   >  SRR4302543.5671382/1‑94 (MQ=60)
                                                                                          CTCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCTTTAAGC   <  SRR4302543.4605563/94‑1 (MQ=60)
                                                                                           TCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCTTTAAGCA  <  SRR4302543.1224183/94‑1 (MQ=60)
                                                                                           TCAGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCTTTAAGCA  <  SRR4302543.435321/94‑1 (MQ=60)
                                                                                             |                                                                                           
AAATCCCACCATTGGAATGACACCAAGCACCACCAGCAGTGCGCATAGCCCTACCAAATCCATCGCATTACCCATGGCGGTAATCGGAGACTCGGCCATCAAGCGCATCATCTGCGGCCAGTGATGCCAGAGAAAAAACCCCGTCACGCTGCCAACCAGGATGGTTTTCAAAATTGCTTTAAGCA  >  NC_000913/1963598‑1963782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑