Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,980,940 +C coding (1/363 nt)
coding (627/627 nt)		 araH ←
araH ←		 ABC‑type arabinose transport system permease component
ABC‑type arabinose transport system permease component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,980,9391.C100.0% 654.0 / NA 210A210G (GCC→GGC) araHABC‑type arabinose transport system permease component
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (118/92);  total (118/92)

Only 100 of 238 total aligned reads displayed.

CCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGT  >  NC_000913/1980847‑1981026
                                                                                             |                                                                                       
ccAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCgg                                                                                          >  1:2619876/1‑93 (MQ=255)
  aGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cc                                                                                       >  1:4838617/1‑92 (MQ=255)
   gAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cct                                                                                      >  2:2430102/1‑91 (MQ=255)
   gAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cct                                                                                      >  1:5281668/1‑91 (MQ=255)
   gAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cct                                                                                      >  1:452582/1‑91 (MQ=255)
    aataatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cctc                                                                                     <  2:4777098/93‑4 (MQ=255)
     ataatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cctct                                                                                    >  1:141505/1‑89 (MQ=255)
     ataatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑cctct                                                                                    >  1:5187294/1‑89 (MQ=255)
       aatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTc                                                                                   <  2:1051827/93‑1 (MQ=255)
       aatTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTc                                                                                   <  1:6484437/93‑1 (MQ=255)
         ttCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGt                                                                                 >  1:7795263/1‑93 (MQ=255)
          tCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGtt                                                                                <  2:3144419/93‑1 (MQ=255)
           ccGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTc                                                                               >  2:518454/1‑93 (MQ=255)
                tATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGcc                                                                          >  2:791164/1‑93 (MQ=255)
                tATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGcc                                                                          >  2:3508013/1‑93 (MQ=255)
                  tCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCaa                                                                        >  1:2135710/1‑93 (MQ=255)
                  ccGCTGATACCAGGCCTGAGAAAACAAAGATAATAATTTGGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCaa                                                                        <  2:6158025/92‑1 (MQ=255)
                   cGCTGATGCCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACACCCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAAt                                                                       <  2:4927400/93‑1 (MQ=255)
                    gCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATc                                                                      <  2:3563774/93‑1 (MQ=255)
                       gATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCTCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGcc                                                                   <  1:949956/93‑1 (MQ=255)
                       gATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGcc                                                                   >  1:603351/1‑93 (MQ=255)
                        aTACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCa                                                                  <  1:1201783/93‑1 (MQ=255)
                        aTACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCa                                                                  >  2:428440/1‑93 (MQ=255)
                         tACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAg                                                                 >  1:5905551/1‑93 (MQ=255)
                          aCCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAgg                                                                <  2:5000872/93‑1 (MQ=255)
                           ccAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAggg                                                               <  2:393173/93‑1 (MQ=255)
                           ccAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCCGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAggg                                                               >  2:523458/1‑93 (MQ=255)
                            cAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAgggg                                                              >  1:37875/1‑92 (MQ=255)
                            cAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGgt                                                              <  1:764614/93‑1 (MQ=255)
                            cAGGCCTGAGAGAACAAAGATAATAATTGTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGgt                                                              <  2:1977040/93‑1 (MQ=255)
                            cAGGCCGGAGAGACAAAAGATAATAATTTTGGTGAGACCAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGgt                                                              <  1:6254495/93‑1 (MQ=255)
                              ggCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAggcgct                                                            >  1:1052765/1‑89 (MQ=255)
                              ggCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGgtgt                                                            >  1:2437921/1‑93 (MQ=255)
                              ggCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGgtgt                                                            <  2:7370318/93‑1 (MQ=255)
                                ccTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTa                                                          >  2:2654494/1‑93 (MQ=255)
                                 cTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTAc                                                         >  1:1718394/1‑93 (MQ=255)
                                 cTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGCGTTAc                                                         >  1:6801266/1‑93 (MQ=255)
                                  tGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACg                                                        >  2:177155/1‑93 (MQ=255)
                                  tGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACg                                                        >  2:1664973/1‑93 (MQ=255)
                                     gagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGAcc                                                     >  1:5558126/1‑93 (MQ=255)
                                     gagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGAcc                                                     >  2:570837/1‑93 (MQ=255)
                                      agaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCa                                                    >  2:478188/1‑93 (MQ=255)
                                       gaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaa                                                   >  2:5345242/1‑93 (MQ=255)
                                        aaCAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaaa                                                  <  2:3010706/93‑1 (MQ=255)
                                        aaCAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaaa                                                  <  1:4989351/93‑1 (MQ=255)
                                         aCAAAGATAATAATTTTGGTGCGCACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAg                                                 <  2:4322697/93‑1 (MQ=255)
                                         aCAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAg                                                 >  1:3492864/1‑93 (MQ=255)
                                         aCAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAg                                                 <  1:3999485/93‑1 (MQ=255)
                                         aCAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAg                                                 >  1:802002/1‑93 (MQ=255)
                                           aaaGATAATAATTTTGGTGCGAACAGCCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggt                                               <  1:7350465/93‑1 (MQ=255)
                                           aaaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggt                                               <  2:4429709/93‑1 (MQ=255)
                                           aaaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggt                                               <  2:1483366/93‑1 (MQ=255)
                                           aaaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggg                                               >  2:7404855/1‑92 (MQ=255)
                                            aaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtg                                              <  1:2481052/93‑1 (MQ=255)
                                            aaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtg                                              >  1:1110221/1‑93 (MQ=255)
                                            aaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtg                                              <  1:7149845/93‑1 (MQ=255)
                                            aaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtg                                              <  1:5980076/93‑1 (MQ=255)
                                             aGATAATAATTTTGGTGCGAACAACCGGTACGCCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtgg                                             <  1:7355910/93‑1 (MQ=255)
                                              gATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtggt                                            >  1:1836681/1‑93 (MQ=255)
                                               ataataATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGtt                                           <  2:5595252/93‑1 (MQ=255)
                                               ataataATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGtt                                           >  2:4114058/1‑93 (MQ=255)
                                                taataaTTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGttt                                          <  1:440876/93‑1 (MQ=255)
                                                taataaTTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGttt                                          >  1:7593085/1‑93 (MQ=255)
                                                  ataatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTa                                        <  2:395893/93‑1 (MQ=255)
                                                   aaatTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTAt                                       <  1:2406001/92‑1 (MQ=255)
                                                     atTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTc                                     >  2:2202509/1‑93 (MQ=255)
                                                      ttttGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAATGGTGGTTTTATTca                                    >  2:7841472/1‑93 (MQ=255)
                                                      ttttGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTca                                    >  1:6141693/1‑93 (MQ=255)
                                                        ttGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcagc                                  <  2:6469321/93‑1 (MQ=255)
                                                        ttGGTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcagc                                  >  2:710725/1‑93 (MQ=255)
                                                          ggTGCGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcagcag                                <  1:2831889/93‑1 (MQ=255)
                                                              cGAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCaaa                            >  1:2962778/1‑93 (MQ=255)
                                                               gAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAAc                           <  1:2958074/93‑1 (MQ=255)
                                                               gAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAAc                           >  1:6207673/1‑93 (MQ=255)
                                                               gAACAACCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAAc                           >  2:2220779/1‑93 (MQ=255)
                                                                aaccacCGGTACACCCGCCAGCCGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAAcc                          <  1:5156603/93‑1 (MQ=255)
                                                                aacaacCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCCGCAGCAAAcc                          >  2:6754366/1‑93 (MQ=255)
                                                                 acaacCGGTACCCCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCa                         <  2:6073837/93‑1 (MQ=255)
                                                                  caacCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCaa                        >  2:6280205/1‑93 (MQ=255)
                                                                   aacCGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCaaa                       >  1:5661588/1‑93 (MQ=255)
                                                                     ccGGCACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGa                     <  1:2385419/93‑1 (MQ=255)
                                                                      cGGTACCCCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGAt                    <  1:1286423/93‑1 (MQ=255)
                                                                      cGGTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGAt                    <  1:2787033/93‑1 (MQ=255)
                                                                       ggTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATa                   >  1:1917574/1‑93 (MQ=255)
                                                                       ggTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATa                   <  1:2920434/93‑1 (MQ=255)
                                                                        gTACACCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATaa                  >  2:1721993/1‑93 (MQ=255)
                                                                          ccccccGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATc                <  2:491619/90‑1 (MQ=255)
                                                                           cccccGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCa               <  1:3175113/91‑1 (MQ=255)
                                                                            acCCGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAg              >  1:7899862/1‑93 (MQ=255)
                                                                              ccGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGac            <  2:1835926/93‑1 (MQ=255)
                                                                               cGCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGaca           <  2:7688487/93‑1 (MQ=255)
                                                                                gCCAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGacac          >  2:4524687/1‑93 (MQ=255)
                                                                                 ccAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAcg         >  1:2573366/1‑93 (MQ=255)
                                                                                  cAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAcgc        <  1:3360795/93‑1 (MQ=255)
                                                                                  cAGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAcgc        <  2:6598289/93‑1 (MQ=255)
                                                                                   aGACGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAcgcg       >  2:5383476/1‑93 (MQ=255)
                                                                                     aCGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGAc     <  1:4294940/93‑1 (MQ=255)
                                                                                     aCGCGCGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGAc     >  2:1282914/1‑93 (MQ=255)
                                                                                       gcgcgGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACgg   <  1:4365077/93‑1 (MQ=255)
                                                                                        cgcgGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGt  >  1:1534125/1‑93 (MQ=255)
                                                                                             |                                                                                       
CCAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCGG‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGT  >  NC_000913/1980847‑1981026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAG  >  NC_000913/1980848‑1981033
                                                                                              |                                                                                             
CAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑CC                                                                                              >  SRR4302543.4882744/1‑94 (MQ=60)
 AGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑Cct                                                                                             >  SRR4302543.5329331/1‑92 (MQ=60)
 AGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑Cct                                                                                             >  SRR4302543.5794591/1‑92 (MQ=60)
 AGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑Cct                                                                                             >  SRR4302543.1823449/1‑92 (MQ=60)
 AGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑Cct                                                                                             >  SRR4302543.456801/1‑92 (MQ=60)
 AGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑Cct                                                                                             >  SRR4302543.4443202/1‑92 (MQ=60)
  GAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑Cctc                                                                                            >  SRR4302543.7999209/1‑91 (MQ=60)
   AATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCT                                                                                            >  SRR4302543.142741/1‑94 (MQ=60)
   AATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCT                                                                                            >  SRR4302543.5234089/1‑94 (MQ=60)
   AATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCT                                                                                            >  SRR4302543.2410077/1‑94 (MQ=60)
    ATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTT                                                                                           >  SRR4302543.6875864/1‑94 (MQ=60)
    ATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTT                                                                                           >  SRR4302543.3830990/1‑94 (MQ=60)
      AATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCG                                                                                         <  SRR4302543.6545533/94‑1 (MQ=60)
      AATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCG                                                                                         <  SRR4302543.4379374/94‑1 (MQ=60)
       ATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGT                                                                                        >  SRR4302543.7514792/1‑94 (MQ=60)
       ATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGT                                                                                        >  SRR4302543.7868719/1‑94 (MQ=60)
            GGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCG                                                                                   <  SRR4302543.3439946/94‑1 (MQ=60)
             GCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGC                                                                                  >  SRR4302543.5005972/1‑94 (MQ=60)
              CTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCC                                                                                 >  SRR4302543.5980180/1‑94 (MQ=60)
                ATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAA                                                                               >  SRR4302543.2154818/1‑94 (MQ=60)
                   GCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCG                                                                            >  SRR4302543.2558586/1‑94 (MQ=60)
                   GCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCC                                                                            >  SRR4302543.1883037/1‑94 (MQ=60)
                     TGATACGAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCC                                                                          <  SRR4302543.4394895/94‑1 (MQ=60)
                     TGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCC                                                                          >  SRR4302543.608875/1‑94 (MQ=60)
                      GATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCTCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCA                                                                         <  SRR4302543.958254/94‑1 (MQ=60)
                       ATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAG                                                                        >  SRR4302543.5959451/1‑94 (MQ=60)
                       ATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAG                                                                        <  SRR4302543.2206142/94‑1 (MQ=60)
                       ATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAG                                                                        <  SRR4302543.1212603/94‑1 (MQ=60)
                       ATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAG                                                                        <  SRR4302543.2585170/94‑1 (MQ=60)
                        TACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGG                                                                       >  SRR4302543.1489691/1‑94 (MQ=60)
                          CCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGG                                                                     >  SRR4302543.38223/1‑94 (MQ=60)
                           CAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTG                                                                    <  SRR4302543.6313493/94‑1 (MQ=60)
                           CAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTG                                                                    <  SRR4302543.771344/94‑1 (MQ=60)
                           CAGGCCGGAGAGACAAAAGATAATAATTTTGGTGAGACCAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTG                                                                    <  SRR4302543.6313494/94‑1 (MQ=60)
                            AGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGcgct                                                                   >  SRR4302543.1062199/1‑90 (MQ=60)
                            AGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGT                                                                   >  SRR4302543.2459903/1‑94 (MQ=60)
                             GGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTT                                                                  <  SRR4302543.328333/94‑1 (MQ=60)
                               CCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTAC                                                                <  SRR4302543.2475836/94‑1 (MQ=60)
                               CCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTAC                                                                <  SRR4302543.2444539/94‑1 (MQ=60)
                               CCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTAC                                                                >  SRR4302543.1733740/1‑94 (MQ=60)
                               CCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGCGTTAC                                                                >  SRR4302543.6865485/1‑94 (MQ=60)
                                 TGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGA                                                              >  SRR4302543.6081778/1‑94 (MQ=60)
                                   AGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACC                                                            >  SRR4302543.5608674/1‑94 (MQ=60)
                                   AGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACA                                                            >  SRR4302543.5214307/1‑94 (MQ=60)
                                     AGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAA                                                          >  SRR4302543.78819/1‑94 (MQ=60)
                                     AGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAA                                                          <  SRR4302543.6247743/94‑1 (MQ=60)
                                      GAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAA                                                         >  SRR4302543.7749089/1‑94 (MQ=60)
                                       AACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAG                                                        >  SRR4302543.3524123/1‑94 (MQ=60)
                                       AACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAG                                                        <  SRR4302543.5034772/94‑1 (MQ=60)
                                       AACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAG                                                        >  SRR4302543.809056/1‑94 (MQ=60)
                                        ACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGG                                                       <  SRR4302543.4035149/94‑1 (MQ=60)
                                        ACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGG                                                       >  SRR4302543.2927100/1‑94 (MQ=60)
                                        ACAAAAATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGG                                                       <  SRR4302543.1592110/94‑1 (MQ=60)
                                         CAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGT                                                      >  SRR4302543.186227/1‑94 (MQ=60)
                                         CAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGT                                                      >  SRR4302543.3569003/1‑94 (MQ=60)
                                         CAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGT                                                      >  SRR4302543.4001509/1‑94 (MQ=60)
                                          AAAGATAATAATTTTGGTGCGAACAGCCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTG                                                     <  SRR4302543.7421170/94‑1 (MQ=60)
                                          AAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTG                                                     >  SRR4302543.7704168/1‑94 (MQ=60)
                                          AAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTG                                                     >  SRR4302543.757594/1‑94 (MQ=60)
                                          AAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTG                                                     >  SRR4302543.1120241/1‑94 (MQ=60)
                                          AAAGATAATAATTTGGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTG                                                     <  SRR4302543.7421171/94‑1 (MQ=60)
                                           AAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGG                                                    <  SRR4302543.5198339/94‑1 (MQ=60)
                                           AAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGG                                                    <  SRR4302543.5198338/94‑1 (MQ=60)
                                           AAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGG                                                    >  SRR4302543.4502979/1‑94 (MQ=60)
                                           AAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGG                                                    <  SRR4302543.7219341/94‑1 (MQ=60)
                                           AAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGG                                                    <  SRR4302543.6034861/94‑1 (MQ=60)
                                           AAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGG                                                    <  SRR4302543.2503506/94‑1 (MQ=60)
                                            AGATAATAATTTTGGTGCGAACAACCGGTACGCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGT                                                   <  SRR4302543.7426668/94‑1 (MQ=60)
                                            AGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGT                                                   >  SRR4302543.1853208/1‑94 (MQ=60)
                                            AGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGT                                                   >  SRR4302543.6470605/1‑94 (MQ=60)
                                            AGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGT                                                   >  SRR4302543.7336961/1‑94 (MQ=60)
                                             GATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTT                                                  >  SRR4302543.2616548/1‑94 (MQ=60)
                                             GATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTT                                                  >  SRR4302543.3116205/1‑94 (MQ=60)
                                              ATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTT                                                 >  SRR4302543.7665225/1‑94 (MQ=60)
                                              ATAATAATTTTGGTGCGAACAACCGGTACACCCCCCAGACGCGGG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGCGTTACGCCCAAGGGTGGTTT                                                 >  SRR4302543.2382540/1‑94 (MQ=60)
                                               TAATAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTT                                                <  SRR4302543.445002/94‑1 (MQ=60)
                                               TAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTT                                                >  SRR4302543.4508523/1‑94 (MQ=60)
                                               TAATAATTTTGGTGCGAACAACCGGTACACCCGACAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTT                                                >  SRR4302543.4221912/1‑94 (MQ=60)
                                                AATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTA                                               >  SRR4302543.862184/1‑94 (MQ=60)
                                                  TAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATT                                             >  SRR4302543.2669577/1‑94 (MQ=60)
                                                  TAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATT                                             <  SRR4302543.2409572/94‑1 (MQ=60)
                                                  TAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATT                                             <  SRR4302543.1137938/94‑1 (MQ=60)
                                                  TAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATT                                             >  SRR4302543.2848489/1‑94 (MQ=60)
                                                  AAATTTTGGTGCGAACAACCGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATT                                             <  SRR4302543.2427753/94‑1 (MQ=60)
                                                   AATTGTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTC                                            <  SRR4302543.5460707/94‑1 (MQ=60)
                                                    ATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCA                                           >  SRR4302543.2959190/1‑94 (MQ=60)
                                                    ATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCA                                           >  SRR4302543.6199864/1‑94 (MQ=60)
                                                    ATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCA                                           <  SRR4302543.6504766/94‑1 (MQ=60)
                                                     TTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGGCAGGGTGTTACGACCAAAGGTGGTTTTATTCAG                                          <  SRR4302543.5866209/94‑1 (MQ=60)
                                                       TGGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCA                                        <  SRR4302543.7025831/94‑1 (MQ=60)
                                                        TGGTGCGAACAACCGGTACACCGGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAG                                       <  SRR4302543.2988674/94‑1 (MQ=60)
                                                         GGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGC                                      <  SRR4302543.2857796/94‑1 (MQ=60)
                                                         GGTGCGAACAACCGATCCACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGC                                      <  SRR4302543.874358/94‑1 (MQ=60)
                                                          GTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCA                                     <  SRR4302543.6101835/94‑1 (MQ=60)
                                                          GTGCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCA                                     >  SRR4302543.6182852/1‑94 (MQ=60)
                                                          GTGCGAACAACCGGTACACCCGACAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTTGTTTTATTCAGCAGCA                                     >  SRR4302543.6182850/1‑94 (MQ=60)
                                                            GCGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAA                                   >  SRR4302543.2989679/1‑94 (MQ=60)
                                                             CGAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAAC                                  >  SRR4302543.6266283/1‑94 (MQ=60)
                                                              GAACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACC                                 <  SRR4302543.2984927/94‑1 (MQ=60)
                                                               AACCACCGGTACACCCGCCAGCCGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCA                                <  SRR4302543.5203202/94‑1 (MQ=60)
                                                               AACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCA                                >  SRR4302543.137955/1‑94 (MQ=60)
                                                                ACAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAA                               <  SRR4302543.6582119/94‑1 (MQ=60)
                                                                 CAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAA                              >  SRR4302543.5713228/1‑94 (MQ=60)
                                                                 CAACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGCGTTACGACCAAAGGTGGTTTTCTTCAGCggcacacccag                              >  SRR4302543.126807/1‑83 (MQ=60)
                                                                  AACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAG                             >  SRR4302543.295171/1‑94 (MQ=60)
                                                                   ACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGA                            <  SRR4302543.2700034/94‑1 (MQ=60)
                                                                   ACCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGA                            >  SRR4302543.2087917/1‑94 (MQ=60)
                                                                    cgggcaccCCCGCCAGACGCGCGCC‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGAT                           <  SRR4302543.6078012/86‑1 (MQ=60)
                                                                    CCGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGAT                           <  SRR4302543.1599556/94‑1 (MQ=60)
                                                                    CCGGCACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGAT                           <  SRR4302543.2407016/94‑1 (MQ=60)
                                                                     CGGTACCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATA                          <  SRR4302543.1297891/94‑1 (MQ=60)
                                                                     CGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATA                          >  SRR4302543.1934862/1‑94 (MQ=60)
                                                                     CGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATA                          <  SRR4302543.2812465/94‑1 (MQ=60)
                                                                     CGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATA                          <  SRR4302543.5365724/94‑1 (MQ=60)
                                                                     CGGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATA                          >  SRR4302543.12688/1‑94 (MQ=60)
                                                                      GGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAA                         <  SRR4302543.2946969/94‑1 (MQ=60)
                                                                      GGTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAA                         >  SRR4302543.5238446/1‑94 (MQ=60)
                                                                       GTACACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAAT                        <  SRR4302543.4681399/94‑1 (MQ=60)
                                                                         ACACCCGCCAGACGCGCGCC‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCA                      <  SRR4302543.3639199/94‑1 (MQ=60)
                                                                          CCCCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAG                     <  SRR4302543.3203723/94‑1 (MQ=60)
                                                                          CACCCGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAG                     >  SRR4302543.7974124/1‑94 (MQ=60)
                                                                              CGCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACAC                 >  SRR4302543.7823797/1‑94 (MQ=60)
                                                                               GCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACG                >  SRR4302543.2596829/1‑94 (MQ=60)
                                                                               GCCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACG                <  SRR4302543.6988572/94‑1 (MQ=60)
                                                                                CCAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGC               <  SRR4302543.1100871/94‑1 (MQ=60)
                                                                                 CAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCG              <  SRR4302543.3391020/94‑1 (MQ=60)
                                                                                 CAGACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCG              <  SRR4302543.3391019/94‑1 (MQ=60)
                                                                                    ACGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACG           <  SRR4302543.4333983/94‑1 (MQ=60)
                                                                                     CGCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAAATAATCAGcaacgcaccgg          >  SRR4302543.6407884/1‑83 (MQ=60)
                                                                                      GCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGT         >  SRR4302543.1547869/1‑94 (MQ=60)
                                                                                      GCGCG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGT         <  SRR4302543.4404617/94‑1 (MQ=60)
                                                                                       gcggcgcCTCTTCGTTCCCGCCAATCGCCAGGGTTTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGT         <  SRR4302543.5670702/87‑1 (MQ=60)
                                                                                         CG‑GCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAG      >  SRR4302543.5256943/1‑94 (MQ=60)
                                                                                          G‑C‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCC    >  SRR4302543.6239930/1‑94 (MQ=60)
                                                                                          G‑C‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCC    >  SRR4302543.1009419/1‑94 (MQ=60)
                                                                                           ggcCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGC     <  SRR4302543.6144154/91‑1 (MQ=60)
                                                                                           ggcCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGC     <  SRR4302543.380318/91‑1 (MQ=60)
                                                                                              CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAG  >  SRR4302543.99071/1‑94 (MQ=60)
                                                                                              CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAG  >  SRR4302543.2557554/1‑94 (MQ=60)
                                                                                              CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAG  >  SRR4302543.4310858/1‑94 (MQ=60)
                                                                                              CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAG  >  SRR4302543.6786277/1‑94 (MQ=60)
                                                                                              |                                                                                             
CAGAATAATTCCGGCTATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCGCG‑G‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATAATCAGACACGCGACGGTGAGCCAG  >  NC_000913/1980848‑1981033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑