Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,983,543 |
(C)5→4 |
coding (609/990 nt) |
araF ← |
L‑arabinose‑binding periplasmic protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,983,539 | 0 | C | . | 96.7%
| 912.3
/ 15.6
| 215 | coding (613/990 nt) | araF | L‑arabinose‑binding periplasmic protein |
| Reads supporting (aligned to +/- strand): ref base C (2/5); new base . (87/121); total (89/126) |
| Fisher's exact test for biased strand distribution p-value = 7.02e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.79e-01 |
Only 100 of 237 total aligned reads displayed.
GCCGCCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTA > NC_000913/1983447‑1983627
|
gccgccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGc < 2:6725625/93‑1 (MQ=255)
ccgccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGcc < 1:3038206/93‑1 (MQ=255)
cgccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTCGCAGCGTCAAATTccc > 2:4238705/1‑93 (MQ=255)
gccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGcccc > 1:5594361/1‑93 (MQ=255)
gccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGcccc < 2:7415820/93‑1 (MQ=255)
gccCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGcccc < 1:2170839/93‑1 (MQ=255)
ccAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGccccgg < 1:1076491/93‑3 (MQ=255)
aGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCggga < 2:3832211/93‑2 (MQ=255)
gcGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGt < 2:1315178/92‑1 (MQ=255)
cGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTc < 2:594127/93‑1 (MQ=255)
cGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTc > 1:5858999/1‑93 (MQ=255)
cGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTc < 1:5027055/93‑1 (MQ=255)
cGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTc > 1:3691215/1‑93 (MQ=255)
gTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGt < 2:7145533/93‑1 (MQ=255)
tGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGtt > 2:4539199/1‑93 (MQ=255)
tGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGa < 1:6310567/93‑1 (MQ=255)
tGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGa < 2:2949307/93‑1 (MQ=255)
gTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGAt > 1:7814968/1‑93 (MQ=255)
gTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTg > 1:2356493/1‑93 (MQ=255)
ttCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGTAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTgg > 1:7002526/1‑93 (MQ=255)
cATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggta < 2:6589941/93‑1 (MQ=255)
cATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggta < 2:3520945/93‑1 (MQ=255)
aTACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggtag < 2:2079038/93‑1 (MQ=255)
aTACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggtag < 1:1404192/93‑1 (MQ=255)
tACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggtagg < 1:285670/93‑1 (MQ=255)
tACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggtagg > 1:3082343/1‑93 (MQ=255)
aCCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggtaggt > 2:3401046/1‑93 (MQ=255)
ccGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTggtaggta > 2:1179090/1‑93 (MQ=255)
cgacgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTAc < 2:4939464/93‑1 (MQ=255)
gacgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTAcc < 1:476556/93‑1 (MQ=255)
acgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCt < 2:1598643/93‑1 (MQ=255)
acgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCt < 1:1245833/93‑1 (MQ=255)
acgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCt > 1:3192284/1‑93 (MQ=255)
acgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCt < 1:1958766/93‑1 (MQ=255)
acgaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCt < 1:1700487/93‑1 (MQ=255)
taccAGCCAATGTTTAACTTCCGGATTTTGAACCAGCATTGAGTTGGCAGCGTCAATTG‑CCCCTGGATGTCGTTAGATTTTGTTGGTACCTGa > 2:7035845/4‑93 (MQ=255)
gaTCAGCCAATGTTTGACTTCCGGATGTTTAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGa < 1:1840951/93‑1 (MQ=255)
gaTCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGa > 1:6003381/1‑93 (MQ=255)
tCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATa > 1:7289772/1‑93 (MQ=255)
tCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATa > 2:3989773/1‑93 (MQ=255)
aGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATaaa > 2:3266438/1‑93 (MQ=255)
aGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATaaa > 2:1665500/1‑93 (MQ=255)
cAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAttt < 2:5211132/93‑1 (MQ=255)
cAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAAttt > 1:3099569/1‑93 (MQ=255)
aTGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGt < 1:6749696/93‑1 (MQ=255)
aTGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGt < 1:6486069/93‑1 (MQ=255)
aTGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGt < 1:6290063/93‑1 (MQ=255)
tGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGtt > 2:2643547/1‑93 (MQ=255)
tGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGtt > 2:3125903/1‑93 (MQ=255)
tGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGtt > 2:560255/1‑93 (MQ=255)
tttAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGtttt < 1:4142214/93‑1 (MQ=255)
tttAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGtttt < 1:794512/93‑1 (MQ=255)
tttAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGtttt < 2:2273276/93‑1 (MQ=255)
ttAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGttttt < 2:3984193/93‑1 (MQ=255)
tAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTc > 2:2197384/1‑93 (MQ=255)
tAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTc < 1:3359077/93‑1 (MQ=255)
aaCTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTcc < 2:349399/93‑1 (MQ=255)
aCTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCg < 2:7867461/93‑1 (MQ=255)
cTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCgg > 1:5626472/1‑93 (MQ=255)
tCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGa < 2:744658/93‑1 (MQ=255)
ccGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGaa < 2:6083193/93‑1 (MQ=255)
ccGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGaa < 2:7276660/93‑1 (MQ=255)
ccGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGaa < 2:5312705/93‑1 (MQ=255)
ccGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGaa > 1:3246834/1‑93 (MQ=255)
ggATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATc < 2:2140874/93‑1 (MQ=255)
ggATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATc < 2:6506267/93‑1 (MQ=255)
gATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATcc < 1:3977658/93‑1 (MQ=255)
gATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATcc < 2:636308/93‑1 (MQ=255)
gATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATcc < 2:4470146/93‑1 (MQ=255)
attttGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCg < 2:3262891/90‑1 (MQ=255)
aTGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCg < 2:5022101/93‑1 (MQ=255)
gTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGc < 2:7605377/93‑1 (MQ=255)
gTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGc < 2:222718/93‑1 (MQ=255)
ttGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGcc > 2:1532043/1‑93 (MQ=255)
gAACCAGCATTGAGTGGGTAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGc < 1:2682146/93‑1 (MQ=255)
ccAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCttt < 1:5464563/93‑1 (MQ=255)
ccAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTGGGTAGGTACCTGATAAATTTGTTTTTCCGGAAATCCGGCCGCttt < 2:4717552/93‑1 (MQ=255)
aGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCa < 2:1410052/93‑1 (MQ=255)
aGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCa < 1:4342758/93‑1 (MQ=255)
aGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCa < 2:2998248/93‑1 (MQ=255)
aGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCa > 2:7733807/1‑93 (MQ=255)
cATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAgc < 1:4183992/93‑1 (MQ=255)
cATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAgc < 1:5408289/93‑1 (MQ=255)
aTTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAgcg > 1:2622406/1‑93 (MQ=255)
aTTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAgcg > 1:3918164/1‑93 (MQ=255)
tGAGTGGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCa < 2:719586/93‑1 (MQ=255)
aGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATc < 1:7396409/93‑1 (MQ=255)
tGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCAt > 2:6048784/1‑93 (MQ=255)
ggCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATa < 2:5427149/93‑1 (MQ=255)
gCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAg > 2:6904144/1‑93 (MQ=255)
aGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGAt < 1:5775858/93‑1 (MQ=255)
aGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGAt < 1:3774636/93‑1 (MQ=255)
gCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATc > 2:1057450/1‑93 (MQ=255)
gCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATc < 2:2801133/93‑1 (MQ=255)
cGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATcc < 1:5801126/93‑1 (MQ=255)
gTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATccc > 2:7936063/1‑93 (MQ=255)
gTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGGACCTGATAAATTTGTTTTTCCGGGAACCCGGACGCTTTCCGCCCATCCATAGATccc > 2:5944790/1‑93 (MQ=255)
tCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCg > 2:4628097/1‑93 (MQ=255)
aaaTG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCgta > 2:5720768/1‑93 (MQ=255)
aaaTG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCgta < 2:867599/93‑1 (MQ=255)
|
GCCGCCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTA > NC_000913/1983447‑1983627
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGCGG > NC_000913/1983450‑1983636
|
GCCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCG < SRR4302543.2190287/94‑1 (MQ=60)
CCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCGGG < SRR4302543.1086168/94‑1 (MQ=60)
CAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGGGTTGGCAGCGTCAAATG‑CCCCGGGA > SRR4302543.2701863/1‑94 (MQ=60)
AGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGAT < SRR4302543.6408242/94‑1 (MQ=60)
ACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTC > SRR4302543.5912332/1‑94 (MQ=60)
ACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTC > SRR4302543.3723654/1‑94 (MQ=60)
CGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCG < SRR4302543.5072806/94‑1 (MQ=60)
GGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGT > SRR4302543.5922485/1‑94 (MQ=60)
GGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGT > SRR4302543.3341067/1‑94 (MQ=60)
GCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAG < SRR4302543.4007713/94‑1 (MQ=60)
CTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGA < SRR4302543.5578659/94‑1 (MQ=60)
CTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGA > SRR4302543.2043413/1‑94 (MQ=60)
CTGCCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGA < SRR4302543.3246754/94‑1 (MQ=60)
TGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGAT > SRR4302543.5760775/1‑94 (MQ=60)
TGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGAT < SRR4302543.4189691/94‑1 (MQ=60)
TGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGAT > SRR4302543.7888612/1‑94 (MQ=60)
TGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGAT < SRR4302543.6369918/94‑1 (MQ=60)
CGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTG > SRR4302543.2377864/1‑94 (MQ=60)
CGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTG > SRR4302543.2377865/1‑94 (MQ=60)
GTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGTAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGG > SRR4302543.7068970/1‑94 (MQ=60)
GTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGG > SRR4302543.6085042/1‑94 (MQ=60)
GTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGG > SRR4302543.1395604/1‑94 (MQ=60)
TTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGT < SRR4302543.1830840/94‑1 (MQ=60)
CATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAG < SRR4302543.7044550/94‑1 (MQ=60)
CATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAG < SRR4302543.6889579/94‑1 (MQ=60)
CATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAG < SRR4302543.7424376/94‑1 (MQ=60)
CATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAG < SRR4302543.3548111/94‑1 (MQ=60)
ATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCCAATG‑CCCCGGGATGTCGTTAGATTTGGTAGG > SRR4302543.3110060/1‑94 (MQ=60)
ATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGG > SRR4302543.3110061/1‑94 (MQ=60)
ATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGG < SRR4302543.437129/94‑1 (MQ=60)
ATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGG > SRR4302543.7560715/1‑94 (MQ=60)
ATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGG < SRR4302543.1416869/94‑1 (MQ=60)
TACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGT < SRR4302543.288210/94‑1 (MQ=60)
CGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACC < SRR4302543.2649808/94‑1 (MQ=60)
GACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCT > SRR4302543.7206520/1‑94 (MQ=60)
GACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCT < SRR4302543.480960/94‑1 (MQ=60)
GACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCT > SRR4302543.3221061/1‑94 (MQ=60)
GCGATCAGCCAATGTTTAACTTCCGTATGTTGAACCAGGATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTG < SRR4302543.3860588/94‑1 (MQ=60)
ACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTG < SRR4302543.1715723/94‑1 (MQ=60)
ACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTG < SRR4302543.1257017/94‑1 (MQ=60)
ACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTG < SRR4302543.1976337/94‑1 (MQ=60)
CGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGA > SRR4302543.6058585/1‑94 (MQ=60)
GATCAGCCAATGTTTGACTTCCGGATGTTTAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGAT < SRR4302543.1857512/94‑1 (MQ=60)
ATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATA > SRR4302543.7360136/1‑94 (MQ=60)
ATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATA > SRR4302543.1562089/1‑94 (MQ=60)
TCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAA > SRR4302543.3789258/1‑94 (MQ=60)
TCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGAAGCGGCAAAAG‑CCCCGGGGGGTCGTTAATTTTGGTAGTTACCTTATAA > SRR4302543.1562090/1‑94 (MQ=46)
GCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATT < SRR4302543.5890731/94‑1 (MQ=60)
CCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTAGCTGATAAATTT > SRR4302543.3127449/1‑94 (MQ=60)
CCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTT > SRR4302543.3127450/1‑94 (MQ=60)
CAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTG > SRR4302543.6603922/1‑94 (MQ=60)
ATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTT < SRR4302543.6349293/94‑1 (MQ=60)
ATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTT < SRR4302543.6813439/94‑1 (MQ=60)
ATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTT < SRR4302543.6547180/94‑1 (MQ=60)
GTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTT > SRR4302543.3893927/1‑94 (MQ=60)
TTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTT < SRR4302543.4179625/94‑1 (MQ=60)
TTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTT < SRR4302543.801494/94‑1 (MQ=60)
TTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTT < SRR4302543.2611864/94‑1 (MQ=60)
TTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTT < SRR4302543.5400173/94‑1 (MQ=60)
TTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTC < SRR4302543.4221404/94‑1 (MQ=60)
TAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCC < SRR4302543.5818590/94‑1 (MQ=60)
TAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCC < SRR4302543.3389290/94‑1 (MQ=60)
AACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCG < SRR4302543.1114571/94‑1 (MQ=60)
ACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGG > SRR4302543.5677745/1‑94 (MQ=60)
TCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAA > SRR4302543.3276191/1‑94 (MQ=60)
CCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAAT < SRR4302543.2935856/94‑1 (MQ=60)
GGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCC > SRR4302543.6362403/1‑94 (MQ=60)
GATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCG < SRR4302543.4012932/94‑1 (MQ=60)
GTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCC < SRR4302543.5043066/94‑1 (MQ=60)
GTTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCC < SRR4302543.5468348/94‑1 (MQ=60)
GGTGAACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCC < SRR4302543.5043065/94‑1 (MQ=60)
GAACCAGCATTGAGTGGGTAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCT < SRR4302543.2706453/94‑1 (MQ=60)
ACCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTT < SRR4302543.1905895/94‑1 (MQ=60)
CCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTC > SRR4302543.86152/1‑94 (MQ=60)
CCAGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTC < SRR4302543.5514082/94‑1 (MQ=60)
AGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAG < SRR4302543.7792147/94‑1 (MQ=60)
AGCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAG < SRR4302543.4382144/94‑1 (MQ=60)
GCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGC > SRR4302543.3718775/1‑94 (MQ=60)
GCATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGC < SRR4302543.7980952/94‑1 (MQ=60)
CATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCG > SRR4302543.2646155/1‑94 (MQ=60)
CATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCG > SRR4302543.3952745/1‑94 (MQ=60)
CATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCG < SRR4302543.4221908/94‑1 (MQ=60)
CATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCG < SRR4302543.5457461/94‑1 (MQ=60)
ATTGAGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGC > SRR4302543.6486285/1‑94 (MQ=60)
AGTTGGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCC < SRR4302543.7467436/94‑1 (MQ=60)
GGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAG > SRR4302543.6058295/1‑94 (MQ=60)
GGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAG < SRR4302543.583504/94‑1 (MQ=60)
GGCAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAG < SRR4302543.3216751/94‑1 (MQ=60)
CAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGAT < SRR4302543.4642837/94‑1 (MQ=60)
CAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGAT < SRR4302543.3146183/94‑1 (MQ=60)
CAGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGAT < SRR4302543.282496/94‑1 (MQ=60)
AGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATC < SRR4302543.3807875/94‑1 (MQ=60)
AGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATC < SRR4302543.4119569/94‑1 (MQ=60)
AGCGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATC < SRR4302543.5828436/94‑1 (MQ=60)
CGTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCC < SRR4302543.5853892/94‑1 (MQ=60)
GTCAAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCG < SRR4302543.198644/94‑1 (MQ=60)
AAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAG > SRR4302543.4933880/1‑94 (MQ=60)
AAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAG < SRR4302543.5595299/94‑1 (MQ=60)
AAATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAG < SRR4302543.565390/94‑1 (MQ=60)
AATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGT > SRR4302543.3942740/1‑94 (MQ=60)
ATG‑CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTA < SRR4302543.453456/94‑1 (MQ=60)
tgCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTAC < SRR4302543.6319016/92‑1 (MQ=60)
GCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACG < SRR4302543.5791279/94‑1 (MQ=60)
CCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATGCCGTAGTACGG > SRR4302543.7897336/1‑94 (MQ=60)
CCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGC < SRR4302543.7231121/94‑1 (MQ=60)
CCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGC > SRR4302543.2970560/1‑94 (MQ=60)
CCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGC > SRR4302543.4770085/1‑94 (MQ=60)
CCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGC > SRR4302543.3622460/1‑94 (MQ=60)
CCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGCG > SRR4302543.6429297/1‑94 (MQ=60)
CGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGCGG > SRR4302543.3429355/1‑94 (MQ=60)
CGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGCGG > SRR4302543.5108439/1‑94 (MQ=60)
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GCCCAGCACGGTGCTGTCGTTCATACCGACGATCAGCCAATGTTTAACTTCCGGATGTTGAACCAGCATTGAGTTGGCAGCGTCAAATGCCCCCGGGATGTCGTTAGATTTGGTAGGTACCTGATAAATTTGTTTTTCCGGGAATCCGGCCGCTTTCAGCGCATCCATAGATCCCGTAGTACGGCGG > NC_000913/1983450‑1983636
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
