Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,028,023	A→G	I155V (ATT→GTT)	yedA →	putative transmembrane subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,028,023	0	A	G	100.0%	605.8 / NA	189	I155V (ATT→GTT)	yedA	putative transmembrane subunit
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (77/112); total (77/112)

Only 100 of 195 total aligned reads displayed.

GAATGGGTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGATTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATGGCGGGTGCGATTGA  >  NC_000913/2027933‑2028111

 aaTGGGTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGttt                                                                                       >  2:1124103/1‑93 (MQ=255)

  aTGGGTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGtttt                                                                                      <  2:2952134/93‑1 (MQ=255)

   tgggtgggTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTa                                                                                     >  2:4633896/1‑93 (MQ=255)

    gggtgggtATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTaa                                                                                    >  1:3622706/1‑93 (MQ=255)

     ggtgggtATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAAt                                                                                   >  1:4790897/1‑93 (MQ=255)

     ggtgggtATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAAt                                                                                   <  2:3740626/93‑1 (MQ=255)

     ggtgggtATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAAt                                                                                   <  1:7773507/93‑1 (MQ=255)

      gtgggtATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATc                                                                                  <  2:625030/93‑1 (MQ=255)

       tgggtATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCg                                                                                 >  1:327304/1‑93 (MQ=255)

       tgggtATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCg                                                                                 >  1:55018/1‑93 (MQ=255)

         ggtATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGc                                                                               >  2:4568130/1‑93 (MQ=255)

           tATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTc                                                                             <  1:4622011/93‑1 (MQ=255)

             ttGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCgg                                                                           >  1:3725519/1‑92 (MQ=255)

             ttGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGa                                                                           >  1:5205543/1‑93 (MQ=255)

                ccATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGAttg                                                                        >  1:5621383/1‑92 (MQ=255)

                ccATTGGGATGGCCGGAATCATCATGCTCAATAGCGGGGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGATTTAATCGGCTCGGTTa                                                                        >  2:5091124/1‑93 (MQ=255)

                 cATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAg                                                                       >  2:3159755/1‑93 (MQ=255)

                 cATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAg                                                                       >  2:2525820/1‑93 (MQ=255)

                 cATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAg                                                                       >  2:1498245/1‑93 (MQ=255)

                 cATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCCGTTAg                                                                       >  1:6563558/1‑93 (MQ=255)

                 cATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCCGTTAg                                                                       >  2:6774012/1‑93 (MQ=255)

                  cttGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGc                                                                      <  1:6283689/92‑1 (MQ=255)

                  aTTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGc                                                                      <  1:3370221/93‑1 (MQ=255)

                  aTTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGc                                                                      >  1:3007432/1‑93 (MQ=255)

                  aTTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGc                                                                      >  1:7593969/1‑93 (MQ=255)

                  aTTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGc                                                                      <  2:6132669/93‑1 (MQ=255)

                   ttGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCt                                                                     <  1:2118094/93‑1 (MQ=255)

                    tGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTg                                                                    >  1:4420833/1‑93 (MQ=255)

                      ggCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTggg                                                                  <  2:831358/93‑1 (MQ=255)

                      ggCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTggg                                                                  <  1:3545797/93‑1 (MQ=255)

                         ttGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCGGGGGGt                                                               >  1:1959039/1‑93 (MQ=255)

                          tGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGtt                                                              >  1:3455759/1‑93 (MQ=255)

                          tGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGtt                                                              <  2:4790506/93‑1 (MQ=255)

                           gCCGGTATCTTCATGCTCAATCGCGGTGGACGTTTGGGCGGCCATCCGTGGGGCGCGTTTCTGGTTTTACTCGGATCGATTAGCTGGGCGttt                                                             <  1:6030272/93‑1 (MQ=255)

                           gCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGttt                                                             <  2:1234417/93‑1 (MQ=255)

                           gCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGttt                                                             <  2:4436720/93‑1 (MQ=255)

                           gCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGttt                                                             <  1:3689970/93‑1 (MQ=255)

                            ccGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTg                                                            <  1:7475346/93‑1 (MQ=255)

                             cGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTgg                                                           <  1:2472349/93‑1 (MQ=255)

                             cGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTgg                                                           <  1:4682860/93‑1 (MQ=255)

                             cGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTgg                                                           >  1:1008888/1‑93 (MQ=255)

                              ggAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGc                                                          >  1:4071502/1‑93 (MQ=255)

                               gAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCt                                                         >  1:6648615/1‑93 (MQ=255)

                                aaTCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTc                                                        <  2:1790708/93‑1 (MQ=255)

                                 atcatcATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCa                                                       <  2:7618450/93‑1 (MQ=255)

                                  tcatcaTGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAg                                                      >  2:3505943/1‑93 (MQ=255)

                                  tcatcaTGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAg                                                      >  2:5238990/1‑93 (MQ=255)

                                  tcatcaTGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGGTTTAATCGGCTCGATTAGCTGGGAGTTTTGCTCAg                                                      >  1:4498887/1‑93 (MQ=255)

                                   catcatGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGt                                                     >  1:5673079/1‑93 (MQ=255)

                                     tcatGCTCAATAGCGGGGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGGTTGGGTCAGttt                                                   >  2:2594737/1‑93 (MQ=255)

                                      catGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTa                                                  <  1:2509144/93‑1 (MQ=255)

                                      catGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTa                                                  <  1:3052023/93‑1 (MQ=255)

                                      catGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTa                                                  <  2:4408527/93‑1 (MQ=255)

                                      catGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTa                                                  <  2:3981176/93‑1 (MQ=255)

                                      catGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTa                                                  <  2:7180859/93‑1 (MQ=255)

                                      catGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTa                                                  <  2:7670951/93‑1 (MQ=255)

                                       atGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCCGTTTAt                                                 >  2:6460569/1‑93 (MQ=255)

                                       atGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTAt                                                 >  1:6308440/1‑93 (MQ=255)

                                       atGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTAt                                                 <  1:6852027/93‑1 (MQ=255)

                                        tGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATg                                                <  2:6034131/93‑1 (MQ=255)

                                        tGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATg                                                >  2:962371/1‑93 (MQ=255)

                                        tGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTATAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATg                                                <  2:559890/93‑1 (MQ=255)

                                          cTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGc                                              <  1:1735098/93‑1 (MQ=255)

                                            cAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGGGTTTGGGTCAGTTTATGGCTc                                            >  1:6047672/1‑93 (MQ=255)

                                            cAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTc                                            >  1:4945942/1‑93 (MQ=255)

                                            cAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTc                                            <  1:7738547/93‑1 (MQ=255)

                                             aaTAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTcg                                           <  2:2890393/93‑1 (MQ=255)

                                             aaTAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTCTGGCTCAGTTTATGGCTcc                                           >  1:6532073/1‑92 (MQ=255)

                                              aTAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTccc                                          >  2:3902842/1‑91 (MQ=255)

                                                aGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTccccc                                        >  2:5662329/1‑89 (MQ=255)

                                                 gCGGTGGAAATTTAAGCGGCAATTCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCa                                       <  2:4307151/93‑1 (MQ=255)

                                                   ggTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCccgcccc                                     >  2:6691188/1‑90 (MQ=255)

                                                     tGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCAttac                                   <  1:5791978/93‑1 (MQ=255)

                                                      ggAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCAttacc                                  <  2:3013666/93‑1 (MQ=255)

                                                      ggAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCAttacc                                  <  2:6169183/93‑1 (MQ=255)

                                                          aTTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCAttaccttac                              <  2:6962785/93‑1 (MQ=255)

                                                          aTTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCAttaccttac                              <  2:4130840/93‑1 (MQ=255)

                                                           tttAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCAttaccttacc                             <  1:5854954/93‑1 (MQ=255)

                                                           tttAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCAttaccttacc                             <  2:3278390/93‑1 (MQ=255)

                                                               aGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTa                         <  1:4273850/93‑1 (MQ=255)

                                                                 cGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAgg                       <  1:6931309/93‑1 (MQ=255)

                                                                 cGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAgg                       <  2:2336232/93‑1 (MQ=255)

                                                                 cGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAgg                       <  2:5880360/93‑1 (MQ=255)

                                                                  ggCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAggg                      <  2:2086379/93‑1 (MQ=255)

                                                                   gCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGga                     <  1:5152159/93‑1 (MQ=255)

                                                                    cAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGgat                    <  1:53122/93‑1 (MQ=255)

                                                                    cAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGgat                    <  1:523106/93‑1 (MQ=255)

                                                                    cAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGgat                    <  1:4261082/93‑1 (MQ=255)

                                                                     aaTCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGgatg                   <  2:4085424/93‑1 (MQ=255)

                                                                      aTCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGgatga                  <  1:7280330/93‑1 (MQ=255)

                                                                      aTCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGgatga                  <  1:7128308/93‑1 (MQ=255)

                                                                      aTCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCCCGCCCTTCCTTTCCTCTTGGgaggg                  >  1:720835/1‑90 (MQ=255)

                                                                       tCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGgatgat                 <  1:6182464/93‑1 (MQ=255)

                                                                       tCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGgatgat                 <  1:2023520/93‑1 (MQ=255)

                                                                        ccGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGatgatg                <  1:2368983/93‑1 (MQ=255)

                                                                        ccGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGatgatg                <  2:5319276/93‑1 (MQ=255)

                                                                            ggggCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATGGCgg            <  2:5260973/93‑1 (MQ=255)

                                                                               gcgcGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGCCTCGCGCATTCCCTTTCCTGTAGGGATGATGGCGGGTg         <  2:963488/93‑1 (MQ=255)

                                                                                   gATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATGGCGGGTGCGAt     <  1:1050445/93‑1 (MQ=255)

                                                                                    aTTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATGGCGGGTGCGAtt    <  1:962323/93‑1 (MQ=255)

GAATGGGTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGATTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATGGCGGGTGCGATTGA  >  NC_000913/2027933‑2028111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGGAATGGGTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGATTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATGGCGGGTGCGATTGAGATGC  >  NC_000913/2027931‑2028116

TGGAATGGGTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGT                                                                                              <  SRR4302543.4226263/94‑1 (MQ=60)

TGGAATGGGTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGT                                                                                              <  SRR4302543.6349097/94‑1 (MQ=60)

 GGAATGGGTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTT                                                                                             <  SRR4302543.5840660/94‑1 (MQ=60)

   AATGGGTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTT                                                                                           >  SRR4302543.6843834/1‑94 (MQ=60)

   AATGGGTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGCGGCGCGCTTCTGGTTTT                                                                                           >  SRR4302543.7545901/1‑94 (MQ=60)

     TGGGTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAA                                                                                         >  SRR4302543.3654627/1‑94 (MQ=60)

      GGGTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAAT                                                                                        <  SRR4302543.3826188/94‑1 (MQ=60)

      GGGTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAAT                                                                                        >  SRR4302543.4834687/1‑94 (MQ=60)

      GGGTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAAT                                                                                        >  SRR4302543.5252823/1‑94 (MQ=60)

       GGTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATC                                                                                       <  SRR4302543.7846826/94‑1 (MQ=60)

       GGTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATC                                                                                       <  SRR4302543.7846825/94‑1 (MQ=60)

        GTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCG                                                                                      >  SRR4302543.330300/1‑94 (MQ=60)

        GTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCG                                                                                      >  SRR4302543.55505/1‑94 (MQ=60)

        GTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCG                                                                                      <  SRR4302543.35868/94‑1 (MQ=60)

             TATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCG                                                                                 <  SRR4302543.6302373/94‑1 (MQ=60)

             TATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCG                                                                                 <  SRR4302543.4664005/94‑1 (MQ=60)

              ATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGG                                                                                >  SRR4302543.3758279/1‑94 (MQ=60)

              ATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGA                                                                                >  SRR4302543.5252464/1‑94 (MQ=60)

              ATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGA                                                                                >  SRR4302543.7924031/1‑94 (MQ=60)

               TTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGAT                                                                               <  SRR4302543.6005606/94‑1 (MQ=60)

                 GCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTG                                                                             >  SRR4302543.5672612/1‑94 (MQ=60)

                 GCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATAGGCTCGATTA                                                                             >  SRR4302543.1765277/1‑94 (MQ=60)

                  CCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAG                                                                            >  SRR4302543.7725980/1‑94 (MQ=60)

                  CCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCCGTTAG                                                                            >  SRR4302543.6625318/1‑94 (MQ=60)

                  CCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCCATTAG                                                                            >  SRR4302543.6625319/1‑94 (MQ=60)

                   CATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGC                                                                           >  SRR4302543.3034673/1‑94 (MQ=60)

                   CATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGC                                                                           >  SRR4302543.7666116/1‑94 (MQ=60)

                    CTTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCT                                                                          <  SRR4302543.6342889/94‑1 (MQ=60)

                    ATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCT                                                                          <  SRR4302543.3400494/94‑1 (MQ=60)

                    ATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCT                                                                          <  SRR4302543.2301978/94‑1 (MQ=60)

                    ATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCT                                                                          <  SRR4302543.3492726/94‑1 (MQ=60)

                     TTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTG                                                                         >  SRR4302543.4460900/1‑94 (MQ=60)

                     TTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTG                                                                         <  SRR4302543.2137055/94‑1 (MQ=60)

                      TGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGG                                                                        <  SRR4302543.7058206/94‑1 (MQ=60)

                        GGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGC                                                                      <  SRR4302543.3577280/94‑1 (MQ=60)

                         GCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCG                                                                     <  SRR4302543.4579503/94‑1 (MQ=60)

                          CTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCGGGGGGT                                                                    >  SRR4302543.1976611/1‑94 (MQ=60)

                           TTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTT                                                                   >  SRR4302543.3486705/1‑94 (MQ=60)

                            TGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTT                                                                  <  SRR4302543.337554/94‑1 (MQ=60)

                            TGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTT                                                                  >  SRR4302543.6604325/1‑94 (MQ=60)

                             GCCGGTATCTTCATGCTCAATCGCGGTGGACGTTTGGGCGGCCATCCGTGGGGCGCGTTTCTGGTTTTACTCGGATCGATTAGCTGGGCGTTTG                                                                 <  SRR4302543.6086675/94‑1 (MQ=23)

                             GCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTG                                                                 <  SRR4302543.3722401/94‑1 (MQ=60)

                             GCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTG                                                                 <  SRR4302543.3722402/94‑1 (MQ=60)

                             GCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTG                                                                 >  SRR4302543.4833799/1‑94 (MQ=60)

                             GCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTG                                                                 <  SRR4302543.5675723/94‑1 (MQ=60)

                              CCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGG                                                                <  SRR4302543.7546921/94‑1 (MQ=60)

                              CCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGG                                                                >  SRR4302543.1017812/1‑94 (MQ=60)

                               CGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGC                                                               >  SRR4302543.6936471/1‑94 (MQ=60)

                               CGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGC                                                               <  SRR4302543.4725568/94‑1 (MQ=60)

                               CGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGC                                                               <  SRR4302543.2494675/94‑1 (MQ=60)

                               CGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGC                                                               >  SRR4302543.4107977/1‑94 (MQ=60)

                                GGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCT                                                              >  SRR4302543.4904162/1‑94 (MQ=60)

                                GGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCT                                                              >  SRR4302543.6711373/1‑94 (MQ=60)

                                   ATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAG                                                           >  SRR4302543.3460361/1‑94 (MQ=60)

                                   ATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGGTTTAATCGGCTCGATTAGCTGGGAGTTTTGCTCAG                                                           >  SRR4302543.4539778/1‑94 (MQ=60)

                                    TCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGT                                                          >  SRR4302543.5724858/1‑94 (MQ=60)

                                      ATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTT                                                        <  SRR4302543.5462785/94‑1 (MQ=60)

                                        CATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTAT                                                      <  SRR4302543.4240312/94‑1 (MQ=60)

                                        CATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTAT                                                      >  SRR4302543.6367767/1‑94 (MQ=60)

                                        CATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTAT                                                      <  SRR4302543.2531924/94‑1 (MQ=60)

                                        CATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTAT                                                      <  SRR4302543.3228166/94‑1 (MQ=60)

                                        CATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTAT                                                      <  SRR4302543.3079515/94‑1 (MQ=60)

                                        CATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTAT                                                      <  SRR4302543.5874450/94‑1 (MQ=60)

                                        CATGCTCAAGAGCGGTGGAAATTCAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTAT                                                      <  SRR4302543.2531922/94‑1 (MQ=60)

                                         ATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATG                                                     <  SRR4302543.6916654/94‑1 (MQ=60)

                                         ATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATG                                                     >  SRR4302543.5317594/1‑94 (MQ=60)

                                            CTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTTGCTCAGTTTATGGCT                                                  >  SRR4302543.7323457/1‑94 (MQ=60)

                                            CTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCT                                                  >  SRR4302543.5668241/1‑94 (MQ=60)

                                            CTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCT                                                  <  SRR4302543.1750564/94‑1 (MQ=60)

                                             TCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGGGTTTGGGTCAGTTTATGGCTC                                                 >  SRR4302543.6104915/1‑94 (MQ=60)

                                             TCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTC                                                 >  SRR4302543.4990985/1‑94 (MQ=60)

                                              CAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCG                                                <  SRR4302543.7590401/94‑1 (MQ=60)

                                              CAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCG                                                <  SRR4302543.7811657/94‑1 (MQ=60)

                                              CAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCC                                                >  SRR4302543.5075648/1‑94 (MQ=60)

                                              CAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTCTGGCTCAGTTTATGGCTCC                                                >  SRR4302543.6593567/1‑94 (MQ=60)

                                               AATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGCTTAGCTGGGCGTTTGGCTCAGTTTATGGgtctc                                               >  SRR4302543.3735962/1‑89 (MQ=60)

                                               AATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCCC                                               >  SRR4302543.2750510/1‑94 (MQ=60)

                                                  AGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCTGTTAGCGGGGCGTTTGGCTCAGTTTTTGGCTCccgcg                                            >  SRR4302543.4505236/1‑89 (MQ=60)

                                                  AGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCcgccc                                            >  SRR4302543.3456948/1‑89 (MQ=60)

                                                  AGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCccccc                                            >  SRR4302543.6648183/1‑89 (MQ=60)

                                                   GCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCAT                                           <  SRR4302543.2007479/94‑1 (MQ=60)

                                                      GTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCccccccttc                                        >  SRR4302543.3546890/1‑85 (MQ=60)

                                                      GTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGGTTGGCTCAGTTTATtgctccctcccttc                                        >  SRR4302543.1968748/1‑80 (MQ=60)

                                                       TGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACC                                       <  SRR4302543.5844670/94‑1 (MQ=60)

                                                          AAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCccgcgcgtcacgt                                    >  SRR4302543.2636071/1‑81 (MQ=60)

                                                             TTTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCT                                 <  SRR4302543.5908247/94‑1 (MQ=60)

                                                              TTAAGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCcccccattcctcttccc                                >  SRR4302543.50759/1‑77 (MQ=60)

                                                                 atcgtcactcctgcGGGCGCGATGCTGGTTGTAATCGGCTCTATTAGCTGGGCCTTGTGCTCATGTTATGGCTCGCGCATTACCTTACCTGTAG                             <  SRR4302543.4312685/80‑1 (MQ=28)

                                                                 AGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAG                             <  SRR4302543.4312690/94‑1 (MQ=60)

                                                                 AGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAG                             <  SRR4302543.4312691/94‑1 (MQ=60)

                                                                 AGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAG                             <  SRR4302543.1440992/94‑1 (MQ=60)

                                                                 AGCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAG                             <  SRR4302543.7218201/94‑1 (MQ=60)

                                                                  GCGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGG                            <  SRR4302543.6345692/94‑1 (MQ=60)

                                                                   CGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCcccccctatcctttcttttggg                           >  SRR4302543.1206376/1‑72 (MQ=60)

                                                                   CGGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGG                           <  SRR4302543.6996506/94‑1 (MQ=60)

                                                                    GGCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGA                          <  SRR4302543.306402/94‑1 (MQ=60)

                                                                     GCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGAT                         <  SRR4302543.6087198/94‑1 (MQ=60)

                                                                     GCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGAT                         <  SRR4302543.5827029/94‑1 (MQ=60)

                                                                     GCAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGAT                         <  SRR4302543.5198722/94‑1 (MQ=60)

                                                                      CAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCccccccttcccttccctttggggtg                        >  SRR4302543.3836562/1‑69 (MQ=60)

                                                                      CAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATG                        <  SRR4302543.4299786/94‑1 (MQ=60)

                                                                      CAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATG                        <  SRR4302543.527953/94‑1 (MQ=60)

                                                                      CAATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATG                        <  SRR4302543.53592/94‑1 (MQ=60)

                                                                       AATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCccgcccttcctttcctcttgggaggg                       >  SRR4302543.727342/1‑68 (MQ=60)

                                                                        ATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCcccccttacctctcccctcggggggat                      >  SRR4302543.417476/1‑67 (MQ=60)

                                                                        ATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGAT                      <  SRR4302543.7350641/94‑1 (MQ=60)

                                                                        ATCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGAT                      <  SRR4302543.7197577/94‑1 (MQ=60)

                                                                         TCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCcccccccttccttcctcctggggaggag                     >  SRR4302543.6999247/1‑66 (MQ=60)

                                                                         TCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATG                     <  SRR4302543.2041708/94‑1 (MQ=60)

                                                                         TCCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATG                     <  SRR4302543.6240893/94‑1 (MQ=60)

                                                                          CCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCccgccctttccttcctcttcgggcggatg                    >  SRR4302543.593222/1‑65 (MQ=60)

                                                                          CCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCccgcccttccctttctctttgggtggtgg                    >  SRR4302543.7706410/1‑65 (MQ=60)

                                                                          CCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCccccgcttcccttcccctaaggggtgttg                    >  SRR4302543.638943/1‑65 (MQ=60)

                                                                          CCGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATGG                    <  SRR4302543.2390455/94‑1 (MQ=60)

                                                                          CCGTGGGGCGCGATTCTGGTTTTAATCGGCTCAATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATGG                    <  SRR4302543.5199764/94‑1 (MQ=60)

                                                                           CGTGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATGGC                   <  SRR4302543.4706237/94‑1 (MQ=60)

                                                                             TGGGGCGCGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCccccgttttccttccctgtggggggatggggg                 >  SRR4302543.3687278/1‑62 (MQ=60)

                                                                                    CGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCccgcctttccctttcctgcggggtggttggggggggggg          >  SRR4302543.1533048/1‑55 (MQ=60)

                                                                                    CGATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCcccgccttccctacctgcgggggggtttgggggtgggag          >  SRR4302543.5959669/1‑55 (MQ=60)

                                                                                     GATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATGGCGGGTGCGATT         <  SRR4302543.1059852/94‑1 (MQ=60)

                                                                                     GATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATGGCGGGTGCGATT         <  SRR4302543.6215391/94‑1 (MQ=60)

                                                                                     GATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATGGCGGGTGCGATT         <  SRR4302543.2053927/94‑1 (MQ=60)

                                                                                     GATTCTGGTTTTAATCGGCTCGATTAGCTGGGCCTTTGGCTCAGTTTATGGCTCcggtgctttattaacccaaggggtgggatcgggggcgcga         >  SRR4302543.4130443/1‑54 (MQ=60)

                                                                                      ATTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATGGCGGGTGCGATTG        <  SRR4302543.970768/94‑1 (MQ=60)

                                                                                       TTCTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCccccccttcccttccttttggggtgatgggggggggggcttg       >  SRR4302543.2024935/1‑52 (MQ=60)

                                                                                        TCTGGTTTTAATCTGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATGGCGGGTGCGATTGAG      <  SRR4302543.2422557/94‑1 (MQ=60)

                                                                                         CTGGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCCCGCCTTACCTTTCCTGTtggggggatgggggggggggttgggg     >  SRR4302543.7648109/1‑68 (MQ=60)

                                                                                           GGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATGGCGGGTGCGATTGAGATG   <  SRR4302543.7523671/94‑1 (MQ=60)

                                                                                           GGTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCCTATCTGTAGGGgggggggggggggggggtgggggg   >  SRR4302543.1523536/1‑70 (MQ=60)

                                                                                            GTTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCccgcgttaacttccccttatgggtggatggggggggggcttgggtgg  >  SRR4302543.7867274/1‑47 (MQ=60)

TGGAATGGGTGGGTATTGCCATTGGGCTTGCCGGAATCATCATGCTCAATAGCGGTGGAAATTTAAGCGGCAATCCGTGGGGCGCGATTCTGATTTTAATCGGCTCGATTAGCTGGGCGTTTGGCTCAGTTTATGGCTCGCGCATTACCTTACCTGTAGGGATGATGGCGGGTGCGATTGAGATGC  >  NC_000913/2027931‑2028116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`