Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,072,030 |
T→A |
C824S (TGC→AGC) |
b2000 → |
outer membrane fluffing protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,072,030 | 0 | T | A | 100.0%
| 706.0
/ NA
| 198 | C824S (TGC→AGC) | b2000 | outer membrane fluffing protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (95/103); total (95/103) |
Only 100 of 222 total aligned reads displayed.
GCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCTGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCG > NC_000913/2071940‑2072119
|
cgGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGcc < 1:4479511/93‑1 (MQ=255)
gggggTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCt > 2:246268/1‑93 (MQ=255)
gggTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTgg < 2:6897583/93‑1 (MQ=255)
ggTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGTCTggg > 1:5092476/1‑93 (MQ=255)
ggTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTggg > 1:3932488/1‑93 (MQ=255)
tataTGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCg > 1:1297370/1‑93 (MQ=255)
tatGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGa < 2:884406/93‑1 (MQ=255)
tatGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGa > 2:4035245/1‑93 (MQ=255)
tatGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGa < 2:4190949/93‑1 (MQ=255)
atGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGAt > 2:6953851/1‑93 (MQ=255)
tGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCATGGGCGGATa > 1:6796124/1‑93 (MQ=255)
ggTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATAc > 1:4575562/1‑93 (MQ=255)
ggTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATAc < 2:3813936/93‑1 (MQ=255)
gTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATAcc < 1:4783628/93‑1 (MQ=255)
gTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATAcc < 2:398805/93‑1 (MQ=255)
ctgctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGa > 2:6198860/1‑93 (MQ=255)
gctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAAt > 2:5340890/1‑93 (MQ=255)
ctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATc < 1:1520066/93‑1 (MQ=255)
tgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCt > 2:1003123/1‑93 (MQ=255)
tgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCt < 1:2844145/93‑1 (MQ=255)
ggCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTg > 2:1912639/1‑93 (MQ=255)
gCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTgg > 1:3614485/1‑93 (MQ=255)
gCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCAGGGATGATGACGGCAGCCTGGGCGGATACCTGAATCTgg > 1:3693534/1‑93 (MQ=255)
ccATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGt > 1:7669186/1‑93 (MQ=255)
cATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTa > 2:120717/1‑93 (MQ=255)
cATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTa < 1:1018428/93‑1 (MQ=255)
aTTCTTCCGTTGATGTTAAGGATGATGACGGCTGCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGATTCTGGTac > 2:1021793/1‑93 (MQ=255)
aTTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCNGNGCGGATACCTGNATCTGGGac > 1:4064017/1‑93 (MQ=255)
ttcttcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTaca > 2:605499/1‑93 (MQ=255)
ttcttcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTaca > 2:4683370/1‑93 (MQ=255)
cttcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTacaca > 2:1289824/1‑93 (MQ=255)
cttcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTacaca > 1:7520165/1‑93 (MQ=255)
ttcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGGTGCCGGCAGCCTGGGCGGATACCTGAATCTGGTacacac > 2:7384967/1‑93 (MQ=255)
ttcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTacacac < 1:2113015/93‑1 (MQ=255)
ttcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTacacac < 1:5405446/93‑1 (MQ=255)
tcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACg < 2:5924151/93‑1 (MQ=255)
cGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtc < 1:6520267/93‑1 (MQ=255)
gTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtcc < 2:2947713/93‑1 (MQ=255)
gTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtcc < 2:3577741/93‑1 (MQ=255)
gTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtcc < 1:2456699/93‑1 (MQ=255)
ttGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtcct > 2:3490352/1‑93 (MQ=255)
ttGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtcct < 2:6741932/93‑1 (MQ=255)
ttGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtcct > 2:1109988/1‑93 (MQ=255)
ttGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtcct > 2:911902/1‑93 (MQ=255)
tGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCGGGCAGCCTGGGGGGATACCTGAATCTTGTACACACGtcctc > 1:1141129/1‑93 (MQ=255)
aTGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCg < 1:419601/93‑1 (MQ=255)
tGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCgg > 1:3071159/1‑93 (MQ=255)
ggtAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGc < 1:5702945/91‑1 (MQ=255)
gTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGc > 1:6694354/1‑93 (MQ=255)
gTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTAAACACGTCCTCCGGc > 2:3299234/1‑93 (MQ=255)
tAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCt < 2:23124/93‑1 (MQ=255)
tAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCt > 2:3686447/1‑93 (MQ=255)
aagatggtGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCtgt < 2:7577757/91‑1 (MQ=255)
aGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGGCTGGGCGGATACCTGAATCTGGTGCACACGTCCTCCGGCCtgg > 1:4048883/1‑92 (MQ=255)
aGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCtgt < 2:5890288/93‑1 (MQ=255)
gatgctGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCAGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTgg < 2:7001248/93‑1 (MQ=255)
gatgatGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTgg < 1:4842239/93‑1 (MQ=255)
gatgatGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTgg < 2:2377138/93‑1 (MQ=255)
atgatgACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTggg < 2:5740973/93‑1 (MQ=255)
gatgaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCt > 2:1408775/1‑93 (MQ=255)
tgaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGa < 1:324608/93‑1 (MQ=255)
tgaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGa < 2:626151/93‑1 (MQ=255)
tgaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGa > 2:6781041/1‑93 (MQ=255)
tgaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGa > 1:7116473/1‑93 (MQ=255)
gaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGAc < 1:1686077/93‑1 (MQ=255)
cGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAt > 2:6470098/1‑93 (MQ=255)
ggCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt > 1:427630/1‑93 (MQ=255)
gCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATtg > 1:6276946/1‑93 (MQ=255)
tCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCAGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATtgtg > 1:4896750/1‑93 (MQ=255)
cccGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTgg > 2:1995295/1‑93 (MQ=255)
ccGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGc < 2:4232818/93‑1 (MQ=255)
cGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGca < 1:1215695/93‑1 (MQ=255)
gTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGcac < 1:5317261/93‑1 (MQ=255)
tGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGcaca > 1:2576481/1‑93 (MQ=255)
tGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGcaca > 1:735456/1‑93 (MQ=255)
tGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGcaca < 1:616658/93‑1 (MQ=255)
tGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGcaca > 1:2667226/1‑93 (MQ=255)
gCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAg > 1:1705967/1‑93 (MQ=255)
ccGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTTAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAgg < 1:2307912/93‑1 (MQ=255)
ccGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAgg > 1:4171219/1‑93 (MQ=255)
ccGGCACGGGCCGGGATGATGCCGGCAGGCTGGGCGGATGCCTGAATCTGGTACGCACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAgg < 1:5947455/93‑1 (MQ=255)
cGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAggg < 2:7239295/93‑1 (MQ=255)
ggCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGa < 2:7905674/93‑1 (MQ=255)
gCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGaa > 1:5558962/1‑93 (MQ=255)
aCGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAAcc < 2:7819340/93‑1 (MQ=255)
aCGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAAcc < 2:711602/93‑1 (MQ=255)
gTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACTCACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGc > 2:7266322/1‑93 (MQ=255)
gggATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCcaca > 1:467346/1‑93 (MQ=255)
ggATGATGCCGGCAGCGTGGGCGGATCCCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAg < 1:6606971/93‑1 (MQ=255)
gatgatGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGc > 2:5401182/1‑93 (MQ=255)
atgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCa > 1:7392344/1‑93 (MQ=255)
tgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCAt > 2:3039407/1‑93 (MQ=255)
tgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCAt > 1:4074982/1‑93 (MQ=255)
tgatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCAt < 2:1648869/93‑1 (MQ=255)
tgaggCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCAt < 2:6615311/93‑1 (MQ=255)
tgCCGGCAGCCGGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGACCCCGCCACAGCATGaa < 1:3382710/93‑1 (MQ=255)
ccGGCGGCCCCGTCGGCTCCCTGATTCAGGTACACACGCCGCCCGCCGTGGGGGGGCCCGTTGTGACACAGCGACCCCGCCACAGCATGAAAg < 2:217669/93‑1 (MQ=255)
ccGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAg < 1:5811302/93‑1 (MQ=255)
gggCAGCCTGGGCGGATACCTGAATCTGGTCCACACGCCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGAAACCCGCCACAGCATGAAAGc < 2:1720082/92‑1 (MQ=255)
ggCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCg > 1:1784116/1‑93 (MQ=255)
|
GCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCTGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCG > NC_000913/2071940‑2072119
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCTGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCAT > NC_000913/2071939‑2072123
|
CGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGC < SRR4302543.1069469/94‑1 (MQ=60)
CGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGC > SRR4302543.2612702/1‑94 (MQ=60)
CGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCT < SRR4302543.743918/94‑1 (MQ=60)
CGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCT < SRR4302543.4520187/94‑1 (MQ=60)
GGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGTCTGGG > SRR4302543.5138615/1‑94 (MQ=60)
GGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGG > SRR4302543.3967221/1‑94 (MQ=60)
GGGTATATGGTGCTGCGGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGG < SRR4302543.2524351/94‑1 (MQ=60)
GTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCG > SRR4302543.1197167/1‑94 (MQ=60)
GTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCG > SRR4302543.1308904/1‑94 (MQ=60)
ATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTCGGGGGA > SRR4302543.403634/1‑94 (MQ=60)
ATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATA < SRR4302543.851600/94‑1 (MQ=60)
ATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATA > SRR4302543.7418777/1‑94 (MQ=60)
ATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCATGGGCGGATA > SRR4302543.6860301/1‑94 (MQ=60)
ATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGACGGCACGGTCCGGGGTGATGCCGGCAGCCCGGGCGGCTA > SRR4302543.1788268/1‑94 (MQ=60)
TGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATAC > SRR4302543.4617164/1‑94 (MQ=60)
GGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACC > SRR4302543.6845160/1‑94 (MQ=60)
GGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACC > SRR4302543.4234631/1‑94 (MQ=60)
GTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCT < SRR4302543.4827351/94‑1 (MQ=60)
GGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGACGATGCCGGCAGCCTGGGCGGATACCTG < SRR4302543.6734756/94‑1 (MQ=60)
CTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATCCCTGAA > SRR4302543.4145082/1‑94 (MQ=60)
CTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGAGACCTGAA > SRR4302543.4145083/1‑94 (MQ=60)
TGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAAT < SRR4302543.7079079/94‑1 (MQ=60)
CTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCT < SRR4302543.1533717/94‑1 (MQ=60)
TGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTG < SRR4302543.2852220/94‑1 (MQ=60)
TGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTG < SRR4302543.2870125/94‑1 (MQ=60)
GGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGG > SRR4302543.3646353/1‑94 (MQ=60)
GGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGG < SRR4302543.5326833/94‑1 (MQ=60)
GGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCAGGGATGATGACGGCAGCCTGGGCGGATACCTGAATCTGG > SRR4302543.3726000/1‑94 (MQ=60)
GCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGT > SRR4302543.7741864/1‑94 (MQ=60)
cgctttttccggtgagGTTAAGGATGATGACGGCTCCCGGTCCGGCAAGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTA < SRR4302543.2503553/78‑1 (MQ=60)
CCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTA > SRR4302543.2446765/1‑94 (MQ=60)
CATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTAC > SRR4302543.1479479/1‑94 (MQ=60)
CATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTAC < SRR4302543.1027439/94‑1 (MQ=60)
CATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCNGNGCGGATACCTGNATCTGGGAC > SRR4302543.4100405/1‑94 (MQ=60)
ATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACA > SRR4302543.3752180/1‑94 (MQ=60)
ATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCCGCAGCCTGGGCGGATACCTGAATCTGGTACA > SRR4302543.5575517/1‑94 (MQ=60)
TTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACAC < SRR4302543.6602656/94‑1 (MQ=60)
TTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACAC > SRR4302543.4234044/1‑94 (MQ=60)
TCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACA > SRR4302543.7591944/1‑94 (MQ=60)
TCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACA < SRR4302543.3280186/94‑1 (MQ=60)
TCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACA < SRR4302543.2174450/94‑1 (MQ=60)
CTTCCGTTGATGTTAAGGATGATGACGGCTCCCGGCCCGGCACGGTCAAGGAGGATGCCAGCAGCCAGGGCGAATACCTGTATCTTGTACAGAC > SRR4302543.2427770/1‑94 (MQ=28)
TTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACG < SRR4302543.5454584/94‑1 (MQ=60)
TTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACG < SRR4302543.2131931/94‑1 (MQ=60)
TCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGT < SRR4302543.1572446/94‑1 (MQ=60)
CGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCC < SRR4302543.6581671/94‑1 (MQ=60)
GTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCT > SRR4302543.6324142/1‑94 (MQ=60)
GTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCT < SRR4302543.2478850/94‑1 (MQ=60)
GTTGATGTTAAGGATGATGACGGCTCCCGGGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCT < SRR4302543.4424784/94‑1 (MQ=60)
TTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCGGGCAGCCTGGGGGGATACCTGAATCTTGTACACACGTCCTC > SRR4302543.1151523/1‑94 (MQ=60)
TTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGCCCTC > SRR4302543.4992840/1‑94 (MQ=60)
ATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGG < SRR4302543.6484648/94‑1 (MQ=60)
ATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGG > SRR4302543.3098776/1‑94 (MQ=60)
ATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGG < SRR4302543.1304764/94‑1 (MQ=60)
ATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGG < SRR4302543.423518/94‑1 (MQ=60)
TGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGC > SRR4302543.6757541/1‑94 (MQ=60)
GGTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCC < SRR4302543.5754961/94‑1 (MQ=60)
TTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCT > SRR4302543.4916702/1‑94 (MQ=60)
TTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCT > SRR4302543.7424405/1‑94 (MQ=60)
AAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGGCTGGGCGGATACCTGAATCTGGTGCACACGTCCTCCGGCCTGG > SRR4302543.4085114/1‑94 (MQ=60)
AAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGT > SRR4302543.4085116/1‑94 (MQ=60)
AGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTG > SRR4302543.3701382/1‑94 (MQ=60)
AGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTG < SRR4302543.749723/94‑1 (MQ=60)
GATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGG < SRR4302543.4886391/94‑1 (MQ=60)
ATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGA > SRR4302543.7185604/1‑94 (MQ=60)
TGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGAC < SRR4302543.327550/94‑1 (MQ=60)
GACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACA < SRR4302543.1701220/94‑1 (MQ=60)
ACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAT > SRR4302543.2983369/1‑94 (MQ=60)
CGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATT < SRR4302543.7858551/94‑1 (MQ=60)
CGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATT > SRR4302543.431639/1‑94 (MQ=60)
GGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTG > SRR4302543.3401970/1‑94 (MQ=60)
GGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTG > SRR4302543.6336120/1‑94 (MQ=60)
CTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTG < SRR4302543.2935898/94‑1 (MQ=60)
CTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCAGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTG > SRR4302543.4941384/1‑94 (MQ=60)
CGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCAC < SRR4302543.1226618/94‑1 (MQ=60)
GTGCCGGCGCGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACA < SRR4302543.5365308/94‑1 (MQ=60)
GTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACA > SRR4302543.742040/1‑94 (MQ=60)
GTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACA > SRR4302543.2691409/1‑94 (MQ=60)
GTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACA > SRR4302543.2599960/1‑94 (MQ=60)
GTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACA < SRR4302543.5365307/94‑1 (MQ=60)
TGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAG < SRR4302543.6391684/94‑1 (MQ=60)
TGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAG < SRR4302543.622296/94‑1 (MQ=60)
TGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAG > SRR4302543.1721239/1‑94 (MQ=60)
GCCGGCACGGTCCGGGATGATGCCGTCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGG < SRR4302543.4684460/94‑1 (MQ=60)
GCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGG < SRR4302543.4556876/94‑1 (MQ=60)
GCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGG > SRR4302543.4208992/1‑94 (MQ=60)
CCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTTAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGG < SRR4302543.2328926/94‑1 (MQ=60)
CCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGG < SRR4302543.6001890/94‑1 (MQ=60)
CCGGCACGGGCCGGGATGATGCCGGCAGGCTGGGCGGATGCCTGAATCTGGTACGCACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGG < SRR4302543.6001889/94‑1 (MQ=60)
CGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGA > SRR4302543.1576894/1‑94 (MQ=60)
GGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAA < SRR4302543.1133129/94‑1 (MQ=60)
GGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAA > SRR4302543.5609511/1‑94 (MQ=60)
CACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACC < SRR4302543.2121196/94‑1 (MQ=60)
ACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCC < SRR4302543.5614290/94‑1 (MQ=60)
CGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCG < SRR4302543.5812015/94‑1 (MQ=60)
CGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCG < SRR4302543.5868309/94‑1 (MQ=60)
CGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACGTTGTGGCACAGGGAACCCGCCACA > SRR4302543.5046546/1‑94 (MQ=60)
CGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACA > SRR4302543.471689/1‑94 (MQ=60)
CGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACA > SRR4302543.4653912/1‑94 (MQ=60)
GGATGATGCCGGCAGCGTGGGCGGATCCCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGC < SRR4302543.6669241/94‑1 (MQ=60)
GATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCA > SRR4302543.7463349/1‑94 (MQ=60)
ATGATGCCGGCAGCCTGGGCGGATCCCTGAATCGGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCAT < SRR4302543.3774260/94‑1 (MQ=60)
ATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCAT > SRR4302543.3258429/1‑94 (MQ=60)
ATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCAT > SRR4302543.4111500/1‑94 (MQ=60)
ATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCAT < SRR4302543.3456202/94‑1 (MQ=60)
ATGATGCCGGCAGCCGGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGGGGCACAGGGAACCCGCCACAGCAT < SRR4302543.4104681/94‑1 (MQ=60)
TGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATG > SRR4302543.483328/1‑94 (MQ=60)
TGCCGGCAGCCTGGGCGGATCCCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAA < SRR4302543.7726813/94‑1 (MQ=60)
TGCCGGCAGCCGGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGACCCCGCCACAGCATGAAA < SRR4302543.3413049/94‑1 (MQ=60)
CCGGCAGCCTGGGTGTATCCCTTAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACTTTTTGGCACAGGTACCCCGCCACAGCATGAAAGC < SRR4302543.5864153/94‑1 (MQ=57)
CCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGC < SRR4302543.5864154/94‑1 (MQ=60)
CGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCG > SRR4302543.1711812/1‑94 (MQ=60)
CGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCG > SRR4302543.1800069/1‑94 (MQ=60)
CGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCG > SRR4302543.5852919/1‑94 (MQ=60)
GGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGT > SRR4302543.2008849/1‑94 (MQ=60)
GGCAGCCGGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGGGGCACAGGGAACCCGCCACAGCATGAAAGCGT < SRR4302543.4737674/94‑1 (MQ=60)
GCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTC > SRR4302543.7016219/1‑94 (MQ=60)
GCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTC > SRR4302543.6181096/1‑94 (MQ=60)
CAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCA > SRR4302543.5148102/1‑94 (MQ=60)
CAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCA > SRR4302543.5222459/1‑94 (MQ=60)
AGCCTGGGCGGATCCCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCAT < SRR4302543.7785903/94‑1 (MQ=60)
AGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCAT > SRR4302543.7401884/1‑94 (MQ=60)
AGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCAT < SRR4302543.2326367/94‑1 (MQ=60)
AGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCAT > SRR4302543.2031447/1‑94 (MQ=60)
|
CGCGGGGGTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCTGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCAT > NC_000913/2071939‑2072123
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
