Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,074,403 T→C V25A (GTG→GCG)  yeeS → putative DNA repair protein, RADC family

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,074,4030TC100.0% 579.8 / NA 186V25A (GTG→GCG) yeeSputative DNA repair protein, RADC family
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (85/101);  total (85/101)

Only 100 of 200 total aligned reads displayed.

GTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGA  >  NC_000913/2074314‑2074492
                                                                                         |                                                                                         
gTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGc                                                                                        >  1:5681852/1‑93 (MQ=255)
gTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGc                                                                                        <  2:1731044/93‑1 (MQ=255)
gTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGc                                                                                        >  2:1786398/1‑93 (MQ=255)
  aaaGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCt                                                                                      <  2:6536521/93‑1 (MQ=255)
    aGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCGATCTTCATGAACACGGCGAGGGCtta                                                                                    >  1:603422/1‑92 (MQ=255)
     gTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCa                                                                                   >  2:3879562/1‑93 (MQ=255)
     gTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCa                                                                                   >  2:6177467/1‑93 (MQ=255)
      tAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCAc                                                                                  <  2:2426367/93‑1 (MQ=255)
      tAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCAc                                                                                  <  2:6860873/93‑1 (MQ=255)
      tAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCAc                                                                                  <  1:1535273/93‑1 (MQ=255)
         aggagAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTc                                                                               >  1:6398059/1‑93 (MQ=255)
          ggagAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTcc                                                                              >  1:2820642/1‑93 (MQ=255)
           gagagaTGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCa                                                                             >  1:6911830/1‑93 (MQ=255)
           gagagaTGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCa                                                                             <  2:7628190/93‑1 (MQ=255)
           gagagaGGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCa                                                                             <  2:3560016/93‑1 (MQ=255)
             gagaTGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCAcc                                                                           <  2:3146543/93‑1 (MQ=255)
                    cGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTgcag                                                                    >  1:748044/1‑93 (MQ=255)
                       cgggCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCCGCAc                                                                 <  2:7270091/91‑1 (MQ=255)
                       ccGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCAc                                                                 <  1:12385/93‑1 (MQ=255)
                        cGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACg                                                                <  1:862509/93‑1 (MQ=255)
                         ggCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACgg                                                               <  1:739456/93‑1 (MQ=255)
                         ggCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACgg                                                               >  1:7661086/1‑93 (MQ=255)
                            gAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGaa                                                            <  1:7088521/93‑1 (MQ=255)
                            gAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGaa                                                            <  1:595573/93‑1 (MQ=255)
                             aGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAAt                                                           <  1:818583/93‑1 (MQ=255)
                             aGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAAt                                                           <  1:2403310/93‑1 (MQ=255)
                              gcgcAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATg                                                          <  2:2587770/93‑1 (MQ=255)
                              gcgcAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATg                                                          <  1:6462790/93‑1 (MQ=255)
                                gcAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCATCCGTGCAGCACGGGAATGGc                                                        >  1:6992709/1‑93 (MQ=255)
                                gcAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGc                                                        <  2:6664100/93‑1 (MQ=255)
                                 cAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCt                                                       >  1:4492084/1‑93 (MQ=255)
                                 cAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCt                                                       >  1:1603025/1‑93 (MQ=255)
                                      tCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGCTTc                                                  >  2:2748245/1‑93 (MQ=255)
                                      tCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTc                                                  <  2:5899751/93‑1 (MQ=255)
                                      tCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTc                                                  >  1:5623904/1‑93 (MQ=255)
                                      tCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTc                                                  >  2:5296369/1‑93 (MQ=255)
                                      tCATTCAACGGGCCCTGAAAACCCTGGACCGCCACCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTc                                                  >  1:3403164/1‑93 (MQ=255)
                                      tCATTCAACGGGCCCTCAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTc                                                  >  2:1500206/1‑93 (MQ=255)
                                       cATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCt                                                 >  1:5064356/1‑93 (MQ=255)
                                        aTTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTg                                                >  1:5898845/1‑93 (MQ=255)
                                          tCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAAACCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGaa                                              >  2:581001/1‑93 (MQ=255)
                                            aaCGGGCCCTGAAACCCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACa                                            <  1:1786267/93‑1 (MQ=255)
                                            aaCGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACa                                            >  2:336588/1‑93 (MQ=255)
                                            aaCGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACa                                            <  1:6209003/93‑1 (MQ=255)
                                             aCGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGAGCAGCACGGGAATGGCTGATTCTGAACAt                                           >  2:1178126/1‑93 (MQ=255)
                                              cGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATg                                          >  1:708283/1‑93 (MQ=255)
                                               gggCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATgg                                         <  2:4253209/93‑1 (MQ=255)
                                               gggCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATgg                                         >  2:5406098/1‑93 (MQ=255)
                                               gggCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATgg                                         <  1:7106078/93‑1 (MQ=255)
                                                 gCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCg                                       <  1:1656576/93‑1 (MQ=255)
                                                    cTGAAAACCCTGGACCGCTATCTTCATGAACCCGGCGCGGCCTTCCCCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGa                                    <  1:6412171/93‑1 (MQ=255)
                                                    cTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGa                                    >  1:1466628/1‑93 (MQ=255)
                                                    cTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGa                                    <  2:4746629/93‑1 (MQ=255)
                                                    cTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGa                                    <  1:418207/93‑1 (MQ=255)
                                                    cTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGa                                    <  1:5799222/93‑1 (MQ=255)
                                                     tGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCgggcc                                   >  1:537153/1‑91 (MQ=255)
                                                     tGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAc                                   <  1:2855950/93‑1 (MQ=255)
                                                     tGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAc                                   >  2:3105931/1‑93 (MQ=255)
                                                     tGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAc                                   <  1:7761716/93‑1 (MQ=255)
                                                      gAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACt                                  <  1:5634279/93‑1 (MQ=255)
                                                       aaagCCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTg                                 <  2:5073560/93‑1 (MQ=255)
                                                         aaCCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTggg                               >  1:4067810/1‑92 (MQ=255)
                                                         aaCCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTggg                               >  2:3209635/1‑92 (MQ=255)
                                                          aCCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAg                              <  2:708482/93‑1 (MQ=255)
                                                           cccTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAgg                             >  1:6973300/1‑92 (MQ=255)
                                                               ggACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGGCTGGAGCGTga                         >  2:3652461/1‑93 (MQ=255)
                                                               ggACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTga                         <  1:2465488/93‑1 (MQ=255)
                                                                gACCGCCATCATCATGAACCCGGCGCGGCCTTCGCCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTgaa                        <  1:2211974/93‑1 (MQ=255)
                                                                 aCCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTgaag                       >  1:3300280/1‑93 (MQ=255)
                                                                  ccGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTgaaga                      <  2:6318675/93‑1 (MQ=255)
                                                                  ccGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTgaaga                      <  2:6753067/93‑1 (MQ=255)
                                                                  ccGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTgaaga                      <  1:3792774/93‑1 (MQ=255)
                                                                  ccGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTgaaga                      >  1:2288044/1‑93 (MQ=255)
                                                                   cGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTgaagaa                     <  2:2160427/93‑1 (MQ=255)
                                                                   cGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTgaagaa                     <  1:1115900/93‑1 (MQ=255)
                                                                      cATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTc                  <  1:4921852/93‑1 (MQ=255)
                                                                      cATCTTCATGAACCCCGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTc                  <  1:806624/93‑1 (MQ=255)
                                                                       aTCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTcc                 >  1:6958044/1‑93 (MQ=255)
                                                                        tCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCg                >  2:2895941/1‑93 (MQ=255)
                                                                        tCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCg                >  1:1749556/1‑93 (MQ=255)
                                                                        tCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACGGGAGCGTGAAGAATTCCg                >  2:3007028/1‑93 (MQ=255)
                                                                         cTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCgg               <  1:7335726/93‑1 (MQ=255)
                                                                          ttCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCggg              <  2:449448/93‑1 (MQ=255)
                                                                          ttCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCggg              >  1:6589773/1‑93 (MQ=255)
                                                                          ttCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCggg              <  1:7816216/93‑1 (MQ=255)
                                                                           tCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGt             <  1:1843081/93‑1 (MQ=255)
                                                                           tCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGt             >  1:6665446/1‑93 (MQ=255)
                                                                           tCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGt             <  1:7744731/93‑1 (MQ=255)
                                                                           tCATGAACCCAGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGt             <  2:4120390/93‑1 (MQ=255)
                                                                            cATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTg            >  2:5995785/1‑93 (MQ=255)
                                                                             aTGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGGAGAATTCCGGGGGc           >  2:3093474/1‑93 (MQ=255)
                                                                             aTGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGc           <  2:4012046/93‑1 (MQ=255)
                                                                              tGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCt          >  1:4398730/1‑93 (MQ=255)
                                                                               gAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTg         <  1:2569410/93‑1 (MQ=255)
                                                                                 aCCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTa       <  2:832513/93‑1 (MQ=255)
                                                                                  cccGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTAt      <  2:7748773/93‑1 (MQ=255)
                                                                                   ccGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATc     <  1:4659018/93‑1 (MQ=255)
                                                                                    cGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCt    <  1:666262/93‑1 (MQ=255)
                                                                                      gcgcGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGa  <  2:1247993/93‑1 (MQ=255)
                                                                                      gcgcGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGa  <  1:5268907/93‑1 (MQ=255)
                                                                                         |                                                                                         
GTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGA  >  NC_000913/2074314‑2074492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GAAGGTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAA  >  NC_000913/2074310‑2074496
                                                                                             |                                                                                             
GAAGGTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGC                                                                                               >  SRR4302543.5873270/1‑94 (MQ=60)
   GGTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGC                                                                                            >  SRR4302543.5733712/1‑94 (MQ=60)
        AGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCA                                                                                       <  SRR4302543.1676184/94‑1 (MQ=60)
          TAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACC                                                                                     <  SRR4302543.1549022/94‑1 (MQ=60)
           AGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCT                                                                                    <  SRR4302543.5897557/94‑1 (MQ=60)
           AGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCT                                                                                    <  SRR4302543.3929028/94‑1 (MQ=60)
            GAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTC                                                                                   >  SRR4302543.6458288/1‑94 (MQ=60)
             AGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCC                                                                                  >  SRR4302543.6056028/1‑94 (MQ=60)
             AGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCC                                                                                  >  SRR4302543.2846455/1‑94 (MQ=60)
              GGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCA                                                                                 >  SRR4302543.6976797/1‑94 (MQ=60)
                AGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACC                                                                               >  SRR4302543.5447043/1‑94 (MQ=60)
                 GAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCC                                                                              >  SRR4302543.7045133/1‑94 (MQ=60)
                  AGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCG                                                                             >  SRR4302543.4279156/1‑94 (MQ=60)
                     TGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGC                                                                          <  SRR4302543.176783/94‑1 (MQ=60)
                       ACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAG                                                                        >  SRR4302543.754692/1‑94 (MQ=60)
                          CCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCAC                                                                     >  SRR4302543.1665792/1‑94 (MQ=60)
                          CCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCAC                                                                     <  SRR4302543.5719779/94‑1 (MQ=60)
                          CCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCAC                                                                     <  SRR4302543.6719216/94‑1 (MQ=60)
                           CCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACG                                                                    <  SRR4302543.12493/94‑1 (MQ=60)
                            CGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGG                                                                   <  SRR4302543.1134877/94‑1 (MQ=60)
                            CGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGG                                                                   >  SRR4302543.7733701/1‑94 (MQ=60)
                            CGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGG                                                                   <  SRR4302543.870196/94‑1 (MQ=60)
                             GGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGG                                                                  <  SRR4302543.7303009/94‑1 (MQ=60)
                             GGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGG                                                                  <  SRR4302543.746069/94‑1 (MQ=60)
                                GAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAAT                                                               <  SRR4302543.7157355/94‑1 (MQ=60)
                                GAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAAT                                                               <  SRR4302543.601037/94‑1 (MQ=60)
                                 AGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATG                                                              <  SRR4302543.825788/94‑1 (MQ=60)
                                 AGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATG                                                              <  SRR4302543.2425043/94‑1 (MQ=60)
                                 AGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATG                                                              <  SRR4302543.7770777/94‑1 (MQ=60)
                                  GCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGG                                                             <  SRR4302543.6523686/94‑1 (MQ=60)
                                   CGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCATCCGTGCAGCACGGGAATGGC                                                            >  SRR4302543.7058519/1‑94 (MQ=60)
                                   CGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGC                                                            <  SRR4302543.6874908/94‑1 (MQ=60)
                                    GCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCT                                                           >  SRR4302543.4532905/1‑94 (MQ=60)
                                    GCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCT                                                           <  SRR4302543.5372943/94‑1 (MQ=60)
                                    GCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCT                                                           >  SRR4302543.1617333/1‑94 (MQ=60)
                                      AGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGA                                                         >  SRR4302543.6359191/1‑94 (MQ=60)
                                         CTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTC                                                      >  SRR4302543.5675152/1‑94 (MQ=60)
                                         CTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTC                                                      >  SRR4302543.2562561/1‑94 (MQ=60)
                                         CTCATTCAACGGGCCCTGAAAACCCTGGACCGCCACCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTC                                                      >  SRR4302543.3433647/1‑94 (MQ=60)
                                          TCATTCAACGGGCCCTGAAAACCCTGGACCGGCATCTTCATGAACCCGGCGCGGCCTTCTCCTCCACCCGTGCAGCACGGGAATGGCTGATTCT                                                     <  SRR4302543.6467443/94‑1 (MQ=60)
                                          TCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCT                                                     <  SRR4302543.1581961/94‑1 (MQ=60)
                                          TCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCT                                                     >  SRR4302543.5110347/1‑94 (MQ=60)
                                           CATTCAACGGGCCCTGAACACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCCCCTCCCCACGTGCAGCACGGGAATGGCTGATTCTG                                                    >  SRR4302543.5952656/1‑94 (MQ=60)
                                           CATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTG                                                    >  SRR4302543.5952655/1‑94 (MQ=60)
                                           CATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTG                                                    >  SRR4302543.7883691/1‑94 (MQ=60)
                                              TCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAAC                                                 <  SRR4302543.5688292/94‑1 (MQ=60)
                                              TCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAAC                                                 >  SRR4302543.4789377/1‑94 (MQ=60)
                                                AACGGGCCCTGAAACCCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACAT                                               <  SRR4302543.1802241/94‑1 (MQ=60)
                                                AACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACAT                                               <  SRR4302543.6267629/94‑1 (MQ=60)
                                                 ACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATG                                              >  SRR4302543.714725/1‑94 (MQ=60)
                                                 ACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATG                                              >  SRR4302543.714724/1‑94 (MQ=60)
                                                   GGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGC                                            <  SRR4302543.7175102/94‑1 (MQ=60)
                                                   GGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGC                                            >  SRR4302543.244392/1‑94 (MQ=60)
                                                   CGGCCCTCAAAACCCTGGGCCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGC                                            <  SRR4302543.4204228/94‑1 (MQ=60)
                                                     GCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGG                                          <  SRR4302543.1671405/94‑1 (MQ=60)
                                                     GCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGG                                          <  SRR4302543.6642079/94‑1 (MQ=60)
                                                       CCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGA                                        >  SRR4302543.1479844/1‑94 (MQ=60)
                                                        CTGAAAACCCTGGACCGCTATCTTCATGAACCCGGCGCGGCCTTCCCCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC                                       <  SRR4302543.6472553/94‑1 (MQ=60)
                                                        CTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGCC                                       >  SRR4302543.542132/1‑94 (MQ=60)
                                                        CTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC                                       >  SRR4302543.7428335/1‑94 (MQ=60)
                                                        CTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC                                       <  SRR4302543.422113/94‑1 (MQ=60)
                                                        CTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC                                       <  SRR4302543.5851972/94‑1 (MQ=60)
                                                         TGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGGCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACT                                      >  SRR4302543.7467714/1‑94 (MQ=60)
                                                         TGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACT                                      <  SRR4302543.7834966/94‑1 (MQ=60)
                                                         TGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACT                                      <  SRR4302543.7632608/94‑1 (MQ=60)
                                                         TGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACT                                      <  SRR4302543.2882002/94‑1 (MQ=60)
                                                          GAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTG                                     <  SRR4302543.5685630/94‑1 (MQ=60)
                                                            AAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGG                                   >  SRR4302543.4104241/1‑94 (MQ=60)
                                                             AACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAG                                  <  SRR4302543.6475397/94‑1 (MQ=60)
                                                             AACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAG                                  <  SRR4302543.1490330/94‑1 (MQ=60)
                                                              ACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCCCCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGC                                 <  SRR4302543.1809031/94‑1 (MQ=60)
                                                              ACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGG                                 >  SRR4302543.7038922/1‑94 (MQ=60)
                                                               CCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCGCCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCG                                <  SRR4302543.1952266/94‑1 (MQ=60)
                                                               CCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCG                                <  SRR4302543.3232528/94‑1 (MQ=60)
                                                                   GGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAA                            >  SRR4302543.6250159/1‑94 (MQ=60)
                                                                   GGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAA                            <  SRR4302543.2487733/94‑1 (MQ=60)
                                                                    GACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAG                           >  SRR4302543.3330063/1‑94 (MQ=60)
                                                                    GACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAG                           >  SRR4302543.3330069/1‑94 (MQ=60)
                                                                    GACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAG                           <  SRR4302543.4460865/94‑1 (MQ=60)
                                                                    GACCGCCATCATCATGAACCCGGCGCGGCCTTCGCCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAG                           <  SRR4302543.2231900/94‑1 (MQ=60)
                                                                     ACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGA                          >  SRR4302543.2308933/1‑94 (MQ=60)
                                                                      CCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAA                         <  SRR4302543.3826186/94‑1 (MQ=60)
                                                                       CGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAAT                        <  SRR4302543.1126002/94‑1 (MQ=60)
                                                                       CGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAAT                        <  SRR4302543.2772703/94‑1 (MQ=60)
                                                                       CGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAAT                        >  SRR4302543.6726176/1‑94 (MQ=60)
                                                                          CATCTTCATGAACCCGGCGCGGCCTTCCCCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACGGGAGCGTGAAGCATTCC                     >  SRR4302543.7023509/1‑94 (MQ=60)
                                                                          CATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCC                     <  SRR4302543.4966695/94‑1 (MQ=60)
                                                                          CATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCC                     >  SRR4302543.7023507/1‑94 (MQ=60)
                                                                          CATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCC                     >  SRR4302543.7023508/1‑94 (MQ=60)
                                                                          CATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCC                     <  SRR4302543.813726/94‑1 (MQ=60)
                                                                          CATCTTCATGAACCCCGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCC                     <  SRR4302543.813727/94‑1 (MQ=60)
                                                                           ATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGTAGCGTGAAGAATTCCG                    >  SRR4302543.7109142/1‑94 (MQ=60)
                                                                           ATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCG                    >  SRR4302543.1765183/1‑94 (MQ=60)
                                                                           ATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGGGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCG                    <  SRR4302543.2275730/94‑1 (MQ=60)
                                                                             CTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGG                  >  SRR4302543.6651857/1‑94 (MQ=60)
                                                                             CTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGG                  <  SRR4302543.3541419/94‑1 (MQ=60)
                                                                             CTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGG                  <  SRR4302543.7406302/94‑1 (MQ=60)
                                                                              TTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGGCTGGAGCGTGAAGAATTCCGGGG                 >  SRR4302543.7172104/1‑94 (MQ=60)
                                                                              TTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGT                 >  SRR4302543.6728373/1‑94 (MQ=60)
                                                                              TTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGT                 <  SRR4302543.7889869/94‑1 (MQ=60)
                                                                              CTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGT                 <  SRR4302543.2313847/94‑1 (MQ=60)
                                                                               TCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTG                <  SRR4302543.1859655/94‑1 (MQ=60)
                                                                               TCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTG                <  SRR4302543.7817885/94‑1 (MQ=60)
                                                                                CATGAACCCGGCGCGGCCTTCACCTCCGCCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGC               <  SRR4302543.518490/94‑1 (MQ=60)
                                                                                CATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGC               >  SRR4302543.8668/1‑94 (MQ=60)
                                                                                 ATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCT              >  SRR4302543.4438602/1‑94 (MQ=60)
                                                                                   GAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGT            >  SRR4302543.287098/1‑94 (MQ=60)
                                                                                   GAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGT            <  SRR4302543.2592859/94‑1 (MQ=60)
                                                                                       CCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCT        <  SRR4302543.1407820/94‑1 (MQ=60)
                                                                                       CCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCT        <  SRR4302543.4701452/94‑1 (MQ=60)
                                                                                       CCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCT        <  SRR4302543.4701453/94‑1 (MQ=60)
                                                                                       CCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCT        <  SRR4302543.4997916/94‑1 (MQ=60)
                                                                                       CCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCT        <  SRR4302543.5799112/94‑1 (MQ=60)
                                                                                        CGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACCTGGCGtggctggcgccgtcaaacttccgcggtcttgatgtg       >  SRR4302543.7342977/1‑58 (MQ=60)
                                                                                        CGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTG       <  SRR4302543.7819741/94‑1 (MQ=60)
                                                                                        CGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTG       <  SRR4302543.672392/94‑1 (MQ=60)
                                                                                          GCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAA     <  SRR4302543.5316446/94‑1 (MQ=60)
                                                                                           CGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAAC    <  SRR4302543.3493042/94‑1 (MQ=60)
                                                                                           CGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAAC    <  SRR4302543.4822645/94‑1 (MQ=60)
                                                                                           CGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAAA    >  SRR4302543.2224960/1‑94 (MQ=60)
                                                                                             CGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAA  >  SRR4302543.1244819/1‑94 (MQ=60)
                                                                                             CGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAA  <  SRR4302543.1509631/94‑1 (MQ=60)
                                                                                             |                                                                                             
GAAGGTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAA  >  NC_000913/2074310‑2074496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑