Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,113,625	T→C	L98L (TTA→TTG)	wcaM ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,113,625	0	T	C	99.6%	787.9 / ‑5.0	248	L98L (TTA→TTG)	wcaM	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (132/114); total (133/115)
Fisher's exact test for biased strand distribution p-value = 4.66e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.91e-01

Only 100 of 256 total aligned reads displayed.

CCCTTTGATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGTAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGATATT  >  NC_000913/2113535‑2113714

 ccTTTGATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAg                                                                                        >  1:4270691/1‑93 (MQ=255)

  cTTTGATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCGCCTGGCTGCCGTCCTGCAAGa                                                                                       <  1:7735484/93‑1 (MQ=255)

  cTTTGATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGa                                                                                       <  1:6337438/93‑1 (MQ=255)

  cTTTGATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGa                                                                                       >  2:5609438/1‑93 (MQ=255)

   tttGATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCGCCTGGCTGCCGTCCTGCAAgcc                                                                                      >  1:7817871/1‑91 (MQ=255)

    ttGATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGTAAGACa                                                                                     <  2:6896908/93‑1 (MQ=255)

      gATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACaaa                                                                                   >  1:4828245/1‑93 (MQ=255)

      gATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACaaa                                                                                   <  2:2161424/93‑1 (MQ=255)

        tGGTGCATTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATc                                                                                 <  1:2638255/93‑1 (MQ=255)

         ggTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCg                                                                                >  2:6769334/1‑93 (MQ=255)

           tGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGcc                                                                              >  2:2529209/1‑93 (MQ=255)

             cAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCct                                                                            <  1:7347199/93‑1 (MQ=255)

              cgTCAGACGCACGCACCTCCAGGGTGAGGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCctc                                                                           <  1:1536771/92‑1 (MQ=255)

               gTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCctct                                                                          >  2:5557786/1‑93 (MQ=255)

               gTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCctct                                                                          >  2:1896817/1‑93 (MQ=255)

               gTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCctct                                                                          >  2:1979640/1‑93 (MQ=255)

               gTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCctct                                                                          >  1:1369448/1‑93 (MQ=255)

                 cAGAACCACGCGCATCCAGGGTGATGTTATGCATACTGACGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAGATCGCCCTCTGc                                                                        <  2:7036996/93‑1 (MQ=255)

                  aGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGcc                                                                       <  2:727088/93‑1 (MQ=255)

                    aaCCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGt                                                                     >  2:5903401/1‑93 (MQ=255)

                     aCCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGtt                                                                    >  2:5023664/1‑93 (MQ=255)

                      ccACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTg                                                                   >  2:5959464/1‑93 (MQ=255)

                       cACCCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGc                                                                  <  1:6849791/93‑1 (MQ=255)

                        aCGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGcc                                                                 >  1:3204254/1‑93 (MQ=255)

                          gCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCcgc                                                               >  2:3599695/1‑93 (MQ=255)

                            acaTCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCgcgc                                                             >  2:1655071/1‑93 (MQ=255)

                            acaTCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCgcgc                                                             >  2:3926813/1‑93 (MQ=255)

                               tCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAg                                                          >  1:5843264/1‑93 (MQ=255)

                               tCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAg                                                          >  2:2628098/1‑93 (MQ=255)

                               tCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAg                                                          >  1:6076161/1‑93 (MQ=255)

                               tCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAg                                                          >  2:1173143/1‑93 (MQ=255)

                                ccAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGc                                                         <  2:1824739/93‑1 (MQ=255)

                                  aGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCtt                                                       >  2:5455063/1‑93 (MQ=255)

                                     gTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCa                                                    >  2:3520866/1‑93 (MQ=255)

                                      ttaTGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCaa                                                   <  1:4672406/91‑1 (MQ=255)

                                      tGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCaa                                                   >  2:6163292/1‑93 (MQ=255)

                                      tGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCaa                                                   >  1:3422791/1‑93 (MQ=255)

                                       gATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAg                                                  <  2:506117/93‑1 (MQ=255)

                                       gATGTTATGCATACTGCCGCCATCCTCCCCGGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAg                                                  <  1:2091095/93‑1 (MQ=255)

                                         tGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGaa                                                >  1:5818176/1‑93 (MQ=255)

                                         tGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGaa                                                <  2:1005992/93‑1 (MQ=255)

                                           ttATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAAtg                                              >  2:1507062/1‑93 (MQ=255)

                                            tATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAAtgt                                             <  2:665517/93‑1 (MQ=255)

                                            tATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAAtgt                                             <  2:2966464/93‑1 (MQ=255)

                                            tATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAAtgt                                             <  1:1030991/93‑1 (MQ=255)

                                             aTGCATACTGCCGACAACCTCCCCTGTCGCCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGAGCAAGCTTACAAGAAtgag                                            <  1:7024877/93‑3 (MQ=255)

                                              tGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATgtgt                                           <  2:2793824/93‑1 (MQ=255)

                                                cATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTaa                                         <  2:3084332/93‑1 (MQ=255)

                                                cATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTaa                                         <  1:7528623/93‑1 (MQ=255)

                                                cATACCGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTaa                                         <  1:1905180/93‑1 (MQ=255)

                                                 aTACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAAc                                        >  2:6552923/1‑93 (MQ=255)

                                                 aTACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAAc                                        <  2:3713858/93‑1 (MQ=255)

                                                 aTACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAAc                                        <  1:4080127/93‑1 (MQ=255)

                                                 aTACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAAc                                        <  2:5693191/93‑1 (MQ=255)

                                                  tACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACg                                       <  2:1259427/93‑1 (MQ=255)

                                                    cTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGtt                                     <  2:4497812/93‑1 (MQ=255)

                                                    cTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGtt                                     <  1:4405392/93‑1 (MQ=255)

                                                     tGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGttt                                    >  1:6124426/1‑93 (MQ=255)

                                                      gccgccATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGtttt                                   >  1:2544284/1‑93 (MQ=255)

                                                       ccgccATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTa                                  <  2:4677864/93‑1 (MQ=255)

                                                       ccgccATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTa                                  >  1:5576885/1‑93 (MQ=255)

                                                        cgccATCCTCCCCTGTCCCCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTAc                                 <  2:6370609/93‑1 (MQ=255)

                                                        cgccATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTAc                                 <  2:3309202/93‑1 (MQ=255)

                                                         gccATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTAcc                                >  1:1714379/1‑93 (MQ=255)

                                                             tcctccCCTGTCACCTGGCTGCCGTCCTGCAAGACCAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTCCCggga                            >  1:3257642/1‑93 (MQ=255)

                                                             tcctccCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCggga                            >  1:1295714/1‑93 (MQ=255)

                                                             gcctccCCTGTCACCTCGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCTTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCggga                            <  1:4454587/92‑1 (MQ=255)

                                                               ctccCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCgggagg                          <  1:2161556/93‑1 (MQ=255)

                                                               ctccCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCgggagg                          >  1:5355755/1‑93 (MQ=255)

                                                                tccCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCgggaggg                         >  1:5608723/1‑93 (MQ=255)

                                                                 ccccTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCgggagggc                        >  1:3076204/1‑92 (MQ=255)

                                                                  cccTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGAt                       <  1:5966664/93‑1 (MQ=255)

                                                                   ccTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATa                      >  2:2253686/1‑93 (MQ=255)

                                                                   ccTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGCAACGTTTTACCGGGAGGGATa                      <  2:4642389/93‑1 (MQ=255)

                                                                    cTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATaa                     >  1:2790985/1‑93 (MQ=255)

                                                                     tGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATaaa                    <  1:6176168/93‑1 (MQ=255)

                                                                     tGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATaaa                    >  1:4941447/1‑93 (MQ=255)

                                                                     cgTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATaaa                    <  1:6647406/92‑1 (MQ=255)

                                                                      gTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAg                   >  1:5418096/1‑93 (MQ=255)

                                                                      gTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAg                   <  2:528593/93‑1 (MQ=255)

                                                                      gTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAg                   >  1:61714/1‑93 (MQ=255)

                                                                       tCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGa                  <  2:7687337/93‑1 (MQ=255)

                                                                         cccTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATg                <  2:6266555/92‑1 (MQ=255)

                                                                          ccTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGc               <  1:951282/93‑1 (MQ=255)

                                                                          ccTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGc               >  1:2200673/1‑93 (MQ=255)

                                                                          ccTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGc               >  2:2871159/1‑93 (MQ=255)

                                                                           cTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGcc              <  2:7710638/93‑1 (MQ=255)

                                                                           cTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGcc              <  1:1665351/93‑1 (MQ=255)

                                                                             ggCTGCCGTCCTGGAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCgg            >  1:5226126/1‑93 (MQ=255)

                                                                             ggCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCgg            >  2:7205260/1‑93 (MQ=255)

                                                                              gCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGgt           >  2:7887462/1‑93 (MQ=255)

                                                                              gCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGgt           <  1:6564403/93‑1 (MQ=255)

                                                                                tGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGgtgt         <  1:7481594/93‑1 (MQ=255)

                                                                                tGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGgtgt         >  1:3815545/1‑93 (MQ=255)

                                                                                 gCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGtt        <  1:87354/93‑1 (MQ=255)

                                                                                   cGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGa      <  1:7272659/93‑1 (MQ=255)

                                                                                    gTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGat     >  1:7704969/1‑93 (MQ=255)

                                                                                      ccTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGatat   <  2:601608/93‑1 (MQ=255)

                                                                                      ccTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGatat   >  2:1615484/1‑93 (MQ=255)

                                                                                      ccTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGatat   <  1:1339966/93‑1 (MQ=255)

CCCTTTGATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGTAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGATATT  >  NC_000913/2113535‑2113714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCCCTTTGATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGTAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGATATTGTCA  >  NC_000913/2113534‑2113718

GCCCTTTGATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAA                                                                                             >  SRR4302543.2723533/1‑94 (MQ=60)

 CCCTTTGATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAG                                                                                            >  SRR4302543.4309497/1‑94 (MQ=60)

   CTTTGATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCGCCTGGCTGCCGTCCTGCAAGCC                                                                                          >  SRR4302543.7891530/1‑94 (MQ=60)

   CTTTGATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCGCCTGGCTGCCGTCCTGCAAGAC                                                                                          <  SRR4302543.7808573/94‑1 (MQ=60)

   CTTTGATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGAC                                                                                          >  SRR4302543.7989406/1‑94 (MQ=60)

   CTTTGATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGAC                                                                                          <  SRR4302543.6397032/94‑1 (MQ=60)

   CTTTGATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCAGTCACCTGGCTGCCGTCCTGCAAGAC                                                                                          >  SRR4302543.1694484/1‑94 (MQ=60)

      TGATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAA                                                                                       >  SRR4302543.3608855/1‑94 (MQ=60)

      TGATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAA                                                                                       >  SRR4302543.4872300/1‑94 (MQ=60)

       GATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAAT                                                                                      >  SRR4302543.2079069/1‑94 (MQ=60)

       GATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAAT                                                                                      >  SRR4302543.7231587/1‑94 (MQ=60)

         TGGTGCATTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCG                                                                                    <  SRR4302543.2662146/94‑1 (MQ=60)

          GGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGC                                                                                   >  SRR4302543.4851339/1‑94 (MQ=60)

              CAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTC                                                                               <  SRR4302543.7417875/94‑1 (MQ=60)

              CAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTC                                                                               <  SRR4302543.393983/94‑1 (MQ=60)

              CAGGCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGGTGCCGTCCTGCAAGACAAATCGCCCTC                                                                               <  SRR4302543.2769854/94‑1 (MQ=60)

               cgtcagacgCACGCACCTCCAGGGTGAGGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCT                                                                              <  SRR4302543.1550529/85‑1 (MQ=60)

               AGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCT                                                                              >  SRR4302543.4907238/1‑94 (MQ=60)

               AGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCT                                                                              >  SRR4302543.1381739/1‑94 (MQ=60)

                GTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTG                                                                             <  SRR4302543.5985700/94‑1 (MQ=60)

                GTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTG                                                                             >  SRR4302543.1164397/1‑94 (MQ=60)

                GTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTG                                                                             >  SRR4302543.3150718/1‑94 (MQ=60)

                GTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTC                                                                             >  SRR4302543.5872360/1‑94 (MQ=60)

                 TCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGC                                                                            >  SRR4302543.5756224/1‑94 (MQ=60)

                 TCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGC                                                                            >  SRR4302543.7800712/1‑94 (MQ=60)

                  CAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCC                                                                           <  SRR4302543.2148758/94‑1 (MQ=60)

                        CACGCACATCTAGGGTGATGTTATGCATACTGCCGCCCTCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCC                                                                     <  SRR4302543.1346666/94‑1 (MQ=60)

                        CACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCC                                                                     >  SRR4302543.3233160/1‑94 (MQ=60)

                        CACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCC                                                                     <  SRR4302543.1346667/94‑1 (MQ=60)

                        CACCCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCC                                                                     <  SRR4302543.6914406/94‑1 (MQ=60)

                          CGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGC                                                                   >  SRR4302543.7581699/1‑94 (MQ=60)

                             ACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCA                                                                >  SRR4302543.7275821/1‑94 (MQ=60)

                              CATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAA                                                               >  SRR4302543.1927645/1‑94 (MQ=60)

                               ATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAG                                                              >  SRR4302543.6133755/1‑94 (MQ=60)

                               ATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAG                                                              <  SRR4302543.6437085/94‑1 (MQ=60)

                               ATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAG                                                              >  SRR4302543.5896424/1‑94 (MQ=60)

                                 CCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCT                                                            <  SRR4302543.6835746/94‑1 (MQ=60)

                                   AGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTC                                                          >  SRR4302543.4491111/1‑94 (MQ=60)

                                   AGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTC                                                          >  SRR4302543.1713737/1‑94 (MQ=60)

                                    GGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCC                                                         >  SRR4302543.440407/1‑94 (MQ=60)

                                      GTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAA                                                       >  SRR4302543.3453412/1‑94 (MQ=60)

                                       TTATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAG                                                      <  SRR4302543.4714999/94‑1 (MQ=60)

                                        GATGTTATGCATACTGCCGCCATCCTCCCCGGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGA                                                     <  SRR4302543.2109774/94‑1 (MQ=60)

                                         ATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAA                                                    >  SRR4302543.5871081/1‑94 (MQ=60)

                                          TGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAAT                                                   <  SRR4302543.213358/94‑1 (MQ=60)

                                          TGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAAT                                                   >  SRR4302543.791080/1‑94 (MQ=60)

                                           GTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATG                                                  >  SRR4302543.3254776/1‑94 (MQ=60)

                                           GTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATG                                                  >  SRR4302543.4963489/1‑94 (MQ=60)

                                             gttgcatgctcccgccatcgtcccgtctctgccacccggccTCCTGCAAGACAAATCGCCCGCTGCCGGTGCCGCGCAAGCTTCCAAGAATGTG                                                <  SRR4302543.1040135/53‑1 (MQ=52)

                                             TATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTG                                                <  SRR4302543.5976644/94‑1 (MQ=60)

                                             TATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTG                                                <  SRR4302543.1040137/94‑1 (MQ=60)

                                              ATGCATACTGCCGACAACCTCCCCTGTCGCCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGAGCAAGCTTACAAGAATGAGT                                               <  SRR4302543.7092252/94‑1 (MQ=60)

                                               TGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTA                                              >  SRR4302543.4218251/1‑94 (MQ=60)

                                                 CATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAAC                                            <  SRR4302543.7600440/94‑1 (MQ=60)

                                                 CATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAAC                                            <  SRR4302543.5294410/94‑1 (MQ=60)

                                                 CATACCGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAAC                                            <  SRR4302543.1922332/94‑1 (MQ=60)

                                                  ATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACG                                           <  SRR4302543.1357443/94‑1 (MQ=60)

                                                  ATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACG                                           <  SRR4302543.4116701/94‑1 (MQ=60)

                                                  ATACTGCCCCCATCCTCCCCTGTCCCCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACG                                           <  SRR4302543.2602701/94‑1 (MQ=60)

                                                   TACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGT                                          <  SRR4302543.7715/94‑1 (MQ=60)

                                                     CTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTT                                        <  SRR4302543.4445332/94‑1 (MQ=60)

                                                     CTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTT                                        >  SRR4302543.6182428/1‑94 (MQ=60)

                                                      TGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTT                                       >  SRR4302543.2567489/1‑94 (MQ=60)

                                                      TGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTT                                       <  SRR4302543.7523380/94‑1 (MQ=60)

                                                       GCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTA                                      <  SRR4302543.6050101/94‑1 (MQ=60)

                                                       GCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTA                                      >  SRR4302543.5627653/1‑94 (MQ=60)

                                                         CGCCATCCTCCCCTGTCACCTGGCTGCGGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACC                                    <  SRR4302543.2216443/94‑1 (MQ=60)

                                                         CGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACC                                    >  SRR4302543.1729702/1‑94 (MQ=60)

                                                          GCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCG                                   >  SRR4302543.56448/1‑94 (MQ=60)

                                                           CCATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGG                                  >  SRR4302543.6644734/1‑94 (MQ=60)

                                                            CATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGG                                 >  SRR4302543.694066/1‑94 (MQ=60)

                                                            CATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGG                                 >  SRR4302543.6947613/1‑94 (MQ=60)

                                                             ATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACCAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTCCCGGGA                                >  SRR4302543.3287087/1‑94 (MQ=60)

                                                             ATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGA                                >  SRR4302543.1307241/1‑94 (MQ=60)

                                                             ATCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGA                                >  SRR4302543.5061569/1‑94 (MQ=60)

                                                              TCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAG                               <  SRR4302543.4130297/94‑1 (MQ=60)

                                                              TCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAG                               <  SRR4302543.4494933/94‑1 (MQ=60)

                                                              GCCTCCCCTGTCACCTCGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCTTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAG                               <  SRR4302543.4494934/94‑1 (MQ=60)

                                                              CCCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAG                               <  SRR4302543.5858343/94‑1 (MQ=60)

                                                               CCTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGG                              >  SRR4302543.5404230/1‑94 (MQ=60)

                                                                CTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGG                             >  SRR4302543.5659831/1‑94 (MQ=60)

                                                                CTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGG                             <  SRR4302543.2180923/94‑1 (MQ=60)

                                                                CTCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTCACCGGGAGGG                             <  SRR4302543.7872004/94‑1 (MQ=60)

                                                                 TCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGC                            >  SRR4302543.3103871/1‑94 (MQ=60)

                                                                 TCCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGA                            >  SRR4302543.7871695/1‑94 (MQ=60)

                                                                 CCCCCTGTCACCTGGGTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGA                            <  SRR4302543.2447991/94‑1 (MQ=60)

                                                                  CCCCTGTCGCCTGGCTGCCGTCCTGCAAGACACATCGCCCTCTGCCGTTGCCGCGCAGGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGAT                           <  SRR4302543.1921226/94‑1 (MQ=60)

                                                                  CCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGAT                           >  SRR4302543.6307926/1‑94 (MQ=60)

                                                                  CCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGAT                           >  SRR4302543.619032/1‑94 (MQ=60)

                                                                  CCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGAT                           <  SRR4302543.6155629/94‑1 (MQ=60)

                                                                  CCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGAT                           >  SRR4302543.6069543/1‑94 (MQ=60)

                                                                  CCCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGAT                           <  SRR4302543.3033038/94‑1 (MQ=60)

                                                                   CCCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATA                          <  SRR4302543.6021294/94‑1 (MQ=60)

                                                                    CCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAA                         >  SRR4302543.2816472/1‑94 (MQ=60)

                                                                    CCTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAA                         >  SRR4302543.7352262/1‑94 (MQ=60)

                                                                     CTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAA                        >  SRR4302543.920224/1‑94 (MQ=60)

                                                                     CTGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAA                        >  SRR4302543.4986443/1‑94 (MQ=60)

                                                                      TGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGGTTCCAAGAAGGGGGAACGTTTTACCGGGAGGGATAAAG                       >  SRR4302543.62257/1‑94 (MQ=60)

                                                                      TGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAG                       >  SRR4302543.62256/1‑94 (MQ=60)

                                                                      TGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAG                       <  SRR4302543.6234565/94‑1 (MQ=60)

                                                                      TGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAG                       <  SRR4302543.5590311/94‑1 (MQ=60)

                                                                      TGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAG                       >  SRR4302543.5467373/1‑94 (MQ=60)

                                                                      CGTCACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAG                       <  SRR4302543.6710148/94‑1 (MQ=60)

                                                                         CACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATG                    >  SRR4302543.991640/1‑94 (MQ=60)

                                                                         CACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATG                    >  SRR4302543.4789574/1‑94 (MQ=60)

                                                                         CACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATG                    >  SRR4302543.1538847/1‑94 (MQ=60)

                                                                         CACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATG                    <  SRR4302543.5336266/94‑1 (MQ=60)

                                                                          ACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGC                   >  SRR4302543.2220475/1‑94 (MQ=60)

                                                                          ACCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGC                   >  SRR4302543.3350842/1‑94 (MQ=60)

                                                                           CCTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCC                  <  SRR4302543.959593/94‑1 (MQ=60)

                                                                            CTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCG                 >  SRR4302543.6253521/1‑94 (MQ=60)

                                                                            CTGGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCG                 <  SRR4302543.1680267/94‑1 (MQ=60)

                                                                             TGGCTGCCGTCCTGGAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGG                >  SRR4302543.5273182/1‑94 (MQ=60)

                                                                              GGCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGT               <  SRR4302543.3226714/94‑1 (MQ=60)

                                                                               GCTGCCGTCGTGCAAGACAATTCGCCTTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTG              <  SRR4302543.99229/94‑1 (MQ=60)

                                                                               GCTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTG              <  SRR4302543.6626176/94‑1 (MQ=60)

                                                                                CTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGT             <  SRR4302543.5408591/94‑1 (MQ=60)

                                                                                CTGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGT             >  SRR4302543.3849182/1‑94 (MQ=60)

                                                                                 TGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTT            >  SRR4302543.6225171/1‑94 (MQ=60)

                                                                                 TGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTT            <  SRR4302543.6642641/94‑1 (MQ=60)

                                                                                 TGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTT            >  SRR4302543.7612520/1‑94 (MQ=60)

                                                                                 TGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTT            <  SRR4302543.7553209/94‑1 (MQ=60)

                                                                                 TGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTT            >  SRR4302543.7437632/1‑94 (MQ=60)

                                                                                 TGCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTT            <  SRR4302543.553408/94‑1 (MQ=60)

                                                                                  GCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTG           <  SRR4302543.88163/94‑1 (MQ=60)

                                                                                  GCCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTG           <  SRR4302543.1410589/94‑1 (MQ=60)

                                                                                   CCGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGA          >  SRR4302543.2322814/1‑94 (MQ=60)

                                                                                    CGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGAT         <  SRR4302543.7342910/94‑1 (MQ=60)

                                                                                    CGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGAT         >  SRR4302543.3291825/1‑94 (MQ=60)

                                                                                    CGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGAT         >  SRR4302543.3795066/1‑94 (MQ=60)

                                                                                    CGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGAT         >  SRR4302543.7777868/1‑94 (MQ=60)

                                                                                    CGTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGAT         >  SRR4302543.1624564/1‑94 (MQ=60)

                                                                                     GTCCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCTGGAGGGATAAAGATGCCGGAGTTGATA        >  SRR4302543.4566309/1‑94 (MQ=60)

                                                                                       CCTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGATATT      <  SRR4302543.1351929/94‑1 (MQ=60)

                                                                                        CTGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGATATTG     >  SRR4302543.400239/1‑94 (MQ=60)

                                                                                         TGCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGATATTGT    >  SRR4302543.5724385/1‑94 (MQ=60)

                                                                                          GCAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGATATTGTC   <  SRR4302543.6951100/94‑1 (MQ=60)

                                                                                           CAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGATATTGTCA  <  SRR4302543.6098957/94‑1 (MQ=60)

GCCCTTTGATGGTGCAGTCAGAACCACGCACATCCAGGGTGATGTTATGCATACTGCCGCCATCCTCCCCTGTCACCTGGCTGCCGTCCTGTAAGACAAATCGCCCTCTGCCGTTGCCGCGCAAGCTTCCAAGAATGTGTAACGTTTTACCGGGAGGGATAAAGATGCCGGTGTTGATATTGTCA  >  NC_000913/2113534‑2113718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`