Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,147,364 A→G R548R (CGT→CGC)  b2070 ← putative chaperonin

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,147,3640AG100.0% 606.9 / NA 194R548R (CGT→CGC) b2070putative chaperonin
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (101/93);  total (101/93)

Only 100 of 205 total aligned reads displayed.

GCCTGAACACAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCACGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAGGCAACATC  >  NC_000913/2147273‑2147453
                                                                                           |                                                                                         
gCCTGAACACAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCac                                                                                          >  1:7210279/1‑93 (MQ=255)
  cTGAACACAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCgcga                                                                                        <  2:6875005/93‑1 (MQ=255)
   tGAACACAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCgcgac                                                                                       <  1:1166423/93‑1 (MQ=255)
   tGAACACAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCgcgac                                                                                       >  2:4811723/1‑93 (MQ=255)
   tGAACACAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCgcgac                                                                                       <  2:1527234/93‑1 (MQ=255)
      acacAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACggg                                                                                    <  2:7862423/93‑1 (MQ=255)
      acacAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACggg                                                                                    >  2:7220798/1‑93 (MQ=255)
      acacAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACggg                                                                                    >  1:5759631/1‑93 (MQ=255)
       cacaAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGt                                                                                   >  2:7822846/1‑93 (MQ=255)
       cacaAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGt                                                                                   <  2:4731295/93‑1 (MQ=255)
        acaAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTa                                                                                  >  1:954288/1‑93 (MQ=255)
        acaAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTa                                                                                  >  2:6408704/1‑93 (MQ=255)
         caAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGGaa                                                                                 >  2:3465740/1‑93 (MQ=255)
           aaaCGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACa                                                                               >  1:3394095/1‑93 (MQ=255)
           aaaCGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACa                                                                               <  1:1802746/93‑1 (MQ=255)
             aCGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATc                                                                             <  1:7790824/93‑1 (MQ=255)
             aCGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATc                                                                             <  1:1007514/93‑1 (MQ=255)
             aCGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATc                                                                             <  1:1519600/93‑1 (MQ=255)
             aCGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATc                                                                             <  1:5354370/93‑1 (MQ=255)
             aCGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATc                                                                             <  2:641617/93‑1 (MQ=255)
                 cGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCg                                                                         <  1:3319709/93‑1 (MQ=255)
                  gTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCgg                                                                        >  1:3135946/1‑93 (MQ=255)
                  gTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCgg                                                                        >  2:3796425/1‑93 (MQ=255)
                  gTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCgg                                                                        >  2:2908861/1‑93 (MQ=255)
                   ttCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGc                                                                       >  2:5488653/1‑93 (MQ=255)
                   ttCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGc                                                                       >  1:2303930/1‑93 (MQ=255)
                   gtCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGc                                                                       <  1:4892143/92‑1 (MQ=255)
                    tCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCt                                                                      >  1:3857732/1‑93 (MQ=255)
                     cacaGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTg                                                                     >  2:606726/1‑93 (MQ=255)
                       caGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAGCCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGtt                                                                   <  1:3498924/93‑1 (MQ=255)
                       caGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGtt                                                                   <  2:7181500/93‑1 (MQ=255)
                       caGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGtt                                                                   >  1:6855986/1‑93 (MQ=255)
                        aGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGttt                                                                  >  2:3277622/1‑93 (MQ=255)
                         gCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTc                                                                 >  2:5810557/1‑93 (MQ=255)
                           tCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCaa                                                               <  1:5955329/93‑1 (MQ=255)
                            cGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAAt                                                              >  2:5998192/1‑93 (MQ=255)
                                   cAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATAACaaaa                                                       >  2:5282782/1‑93 (MQ=255)
                                     gTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGa                                                     <  2:6040897/93‑1 (MQ=255)
                                      tCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGAc                                                    <  2:6134174/93‑1 (MQ=255)
                                        gATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGAcct                                                  >  2:372036/1‑92 (MQ=255)
                                        gATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCCGTTTCAATACCAAAAGACCg                                                  >  1:6239395/1‑93 (MQ=255)
                                          tAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTa                                                >  1:282025/1‑93 (MQ=255)
                                           aaCCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTaa                                               <  1:3671053/93‑1 (MQ=255)
                                           aaCCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTaa                                               <  2:5127430/93‑1 (MQ=255)
                                           aaCCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTaa                                               <  2:2074128/93‑1 (MQ=255)
                                            aCCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAAc                                              >  2:167979/1‑93 (MQ=255)
                                              cGCCTCGGTCAGATGGTCGCCAGTCCCTTGCGCTTGCATAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTACcgc                                            <  1:5394449/93‑1 (MQ=255)
                                               gCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAAcgcc                                           <  1:2032731/93‑1 (MQ=255)
                                               gCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAAcgcc                                           <  2:3528203/93‑1 (MQ=255)
                                               gCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAAcgcc                                           >  1:5591014/1‑93 (MQ=255)
                                                  tGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCt                                        >  2:4628589/1‑93 (MQ=255)
                                                  tGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCt                                        >  2:636586/1‑93 (MQ=255)
                                                   gggTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCtt                                       <  1:1721159/93‑1 (MQ=255)
                                                     gTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTa                                     <  1:468424/93‑1 (MQ=255)
                                                      tCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTAc                                    >  1:6594942/1‑93 (MQ=255)
                                                      gcAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTAc                                    <  1:708682/92‑1 (MQ=255)
                                                       cAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTAcg                                   >  2:3373844/1‑93 (MQ=255)
                                                        aGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGGTGTTTCAATACCAAAAGACCGTAACGCCGCTTTAcgc                                  >  1:6344684/1‑93 (MQ=255)
                                                        aGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTAcgc                                  >  2:2858628/1‑93 (MQ=255)
                                                         gATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTAcgcg                                 >  1:4034471/1‑93 (MQ=255)
                                                          aTGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACgcgc                                <  2:6302288/93‑1 (MQ=255)
                                                           tGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCa                               <  1:7297057/93‑1 (MQ=255)
                                                           tGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCa                               <  2:5890904/93‑1 (MQ=255)
                                                           aggTCGCCAAACCCTGTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCa                               <  1:2624360/92‑1 (MQ=255)
                                                            ggTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAg                              <  2:3954897/93‑1 (MQ=255)
                                                            ggTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAg                              <  1:1305057/93‑1 (MQ=255)
                                                             gTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAgg                             <  2:4362163/93‑1 (MQ=255)
                                                               cGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGc                           >  2:860739/1‑93 (MQ=255)
                                                                gCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGcc                          <  1:4275444/93‑1 (MQ=255)
                                                                 ccAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCa                         >  1:7420254/1‑93 (MQ=255)
                                                                  cAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCaa                        <  2:7491867/93‑1 (MQ=255)
                                                                  cAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCaa                        >  1:1533114/1‑93 (MQ=255)
                                                                  cAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCaa                        <  1:4585769/93‑1 (MQ=255)
                                                                   aaaCCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAAc                       <  2:1410994/93‑1 (MQ=255)
                                                                   aaaCCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAAc                       >  2:2156209/1‑93 (MQ=255)
                                                                   aaaCCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAAc                       <  2:1003344/93‑1 (MQ=255)
                                                                    aaCCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAAcc                      >  1:893722/1‑92 (MQ=255)
                                                                    aaCCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACg                      >  2:1281546/1‑93 (MQ=255)
                                                                     aCCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGc                     >  2:228744/1‑93 (MQ=255)
                                                                       ccTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCg                   <  1:2446081/93‑1 (MQ=255)
                                                                        cTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCgg                  >  2:3112478/1‑93 (MQ=255)
                                                                             ccTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATa             <  2:1622875/92‑1 (MQ=255)
                                                                             aCTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATa             <  1:7672792/93‑1 (MQ=255)
                                                                             aCTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATa             >  1:7557576/1‑93 (MQ=255)
                                                                             aCTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATa             <  2:6748030/93‑1 (MQ=255)
                                                                              cTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATag            <  1:5230250/93‑1 (MQ=255)
                                                                              cTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATag            <  1:1672107/93‑1 (MQ=255)
                                                                               ttGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACTCCGCTTTACGCGCAGGGCCAACGCCGGGAATaga           <  1:3788500/93‑1 (MQ=255)
                                                                               ttGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGTGCCAACGCCGGGAATaga           >  1:7261624/1‑93 (MQ=255)
                                                                               ttGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATaga           <  1:5989497/93‑1 (MQ=255)
                                                                               ttGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATaga           <  1:5542579/93‑1 (MQ=255)
                                                                                tGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATagag          >  1:6743818/1‑93 (MQ=255)
                                                                                 gCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAgg         <  2:7267488/93‑1 (MQ=255)
                                                                                  cTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAGGc        >  1:4963252/1‑93 (MQ=255)
                                                                                  cTTAACGCCGCGACGGGTAACATCTGCGGCTGTTGCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAGGc        >  2:4954767/1‑93 (MQ=255)
                                                                                   ttAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAGGCa       >  2:3827333/1‑93 (MQ=255)
                                                                                    tAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAGGCaa      >  1:29067/1‑93 (MQ=255)
                                                                                    tAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAGGCaa      <  2:2371796/93‑1 (MQ=255)
                                                                                       cgccgcGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAGGCAACAt   <  2:7093662/93‑1 (MQ=255)
                                                                                        gCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAGGCAACAta  >  1:799642/1‑92 (MQ=255)
                                                                                           |                                                                                         
GCCTGAACACAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCACGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAGGCAACATC  >  NC_000913/2147273‑2147453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGGCCTGAACACAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCACGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAGGCAACATCAAT  >  NC_000913/2147271‑2147456
                                                                                             |                                                                                            
CGGCCTGAACACAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCG                                                                                              >  SRR4302543.2749588/1‑94 (MQ=60)
 GGCCTGAACACAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGC                                                                                             <  SRR4302543.5058778/94‑1 (MQ=60)
 GGCCTGAACACAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCAC                                                                                             >  SRR4302543.7280176/1‑94 (MQ=60)
   CCTGAACACAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGA                                                                                           >  SRR4302543.7561871/1‑94 (MQ=60)
    CTGAACACAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGAC                                                                                          <  SRR4302543.5522561/94‑1 (MQ=60)
     TGAACACAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACG                                                                                         <  SRR4302543.1177025/94‑1 (MQ=60)
      GAACACAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGG                                                                                        >  SRR4302543.6824120/1‑94 (MQ=60)
       AACACAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGG                                                                                       >  SRR4302543.5812107/1‑94 (MQ=60)
         CACAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTA                                                                                     >  SRR4302543.962654/1‑94 (MQ=60)
          ACAAAACGGCGTTCACAGCTCGCTTTCCAGTAGATAACCGCCTGGGTCAGATGGTAGCAAAACAATTTCACTTGCTTAACGCCGCGGCGGGAAA                                                                                    >  SRR4302543.4873385/1‑94 (MQ=60)
            AAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACA                                                                                  >  SRR4302543.3424526/1‑94 (MQ=60)
             AAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACAT                                                                                 <  SRR4302543.1818879/94‑1 (MQ=60)
               ACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCT                                                                               <  SRR4302543.1016426/94‑1 (MQ=60)
               ACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCT                                                                               <  SRR4302543.7864254/94‑1 (MQ=60)
               ACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCT                                                                               <  SRR4302543.2364765/94‑1 (MQ=60)
               ACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCT                                                                               <  SRR4302543.5402831/94‑1 (MQ=60)
               ACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCT                                                                               <  SRR4302543.1533243/94‑1 (MQ=60)
               ACGGCGTCCACAGCTCGCTTTCCAGGCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCT                                                                               <  SRR4302543.7670939/94‑1 (MQ=60)
                CGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTG                                                                              <  SRR4302543.4726591/94‑1 (MQ=60)
                CGGCGTTCACAGCTCGCTTCCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTG                                                                              <  SRR4302543.2926104/94‑1 (MQ=60)
                   CGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGG                                                                           >  SRR4302543.3164157/1‑94 (MQ=60)
                   CGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGG                                                                           <  SRR4302543.3349667/94‑1 (MQ=60)
                    GTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGC                                                                          >  SRR4302543.2324918/1‑94 (MQ=60)
                    GTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGC                                                                          >  SRR4302543.3481132/1‑94 (MQ=60)
                    GTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGC                                                                          >  SRR4302543.6385837/1‑94 (MQ=60)
                     TTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCT                                                                         <  SRR4302543.4936740/94‑1 (MQ=60)
                     TTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCT                                                                         >  SRR4302543.850794/1‑94 (MQ=60)
                     TTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCT                                                                         >  SRR4302543.3891813/1‑94 (MQ=60)
                     GTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCT                                                                         <  SRR4302543.4936739/94‑1 (MQ=60)
                        ACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTT                                                                      >  SRR4302543.7356529/1‑94 (MQ=60)
                        ACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTT                                                                      >  SRR4302543.6920630/1‑94 (MQ=60)
                         CAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAGCCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTT                                                                     <  SRR4302543.3530223/94‑1 (MQ=60)
                          AGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTC                                                                    >  SRR4302543.3663756/1‑94 (MQ=60)
                           GCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCA                                                                   <  SRR4302543.1538887/94‑1 (MQ=60)
                             TCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAAT                                                                 <  SRR4302543.6009837/94‑1 (MQ=60)
                             TCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAAT                                                                 >  SRR4302543.1695564/1‑94 (MQ=60)
                             CCGCTCTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAACCCCTTCGACTTGCTTAACGCCGCGACGGAGAACATCTGCGGCTGTTTCAAT                                                                 <  SRR4302543.6009838/94‑1 (MQ=60)
                                  TTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAA                                                            >  SRR4302543.3826447/1‑94 (MQ=60)
                                     CAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAG                                                         >  SRR4302543.2142388/1‑94 (MQ=60)
                                        TCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACC                                                      >  SRR4302543.1193823/1‑94 (MQ=60)
                                         CGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCG                                                     <  SRR4302543.1647040/94‑1 (MQ=60)
                                         CGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCCGTTTCAATACCAAAAGACCG                                                     >  SRR4302543.6298270/1‑94 (MQ=60)
                                         CGATAACCGCCTGAGTCAGATGATCGCCGAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCAGTTTCAATACCAAAAGACCG                                                     <  SRR4302543.7110418/94‑1 (MQ=60)
                                          CATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGT                                                    <  SRR4302543.2637810/94‑1 (MQ=60)
                                           ATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTA                                                   >  SRR4302543.284525/1‑94 (MQ=60)
                                             AACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAAC                                                 <  SRR4302543.3703284/94‑1 (MQ=60)
                                             AACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAAC                                                 >  SRR4302543.6548837/1‑94 (MQ=60)
                                              ACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACG                                                <  SRR4302543.1914913/94‑1 (MQ=60)
                                                CGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCC                                              >  SRR4302543.5641944/1‑94 (MQ=60)
                                                CGCCTCGGTCAGATGGTCGCCAGTCCCTTGCGCTTGCATAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTACCGCC                                              <  SRR4302543.5443494/94‑1 (MQ=60)
                                                 GCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCG                                             <  SRR4302543.5760099/94‑1 (MQ=60)
                                                 GCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCG                                             <  SRR4302543.2050993/94‑1 (MQ=60)
                                                 GCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGAACGTCACGCAG                                             >  SRR4302543.7452838/1‑94 (MQ=60)
                                                   CTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCT                                           >  SRR4302543.5037379/1‑94 (MQ=60)
                                                     GGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTT                                         <  SRR4302543.1736515/94‑1 (MQ=60)
                                                       GTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTAC                                       <  SRR4302543.472778/94‑1 (MQ=60)
                                                       GTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTAC                                       >  SRR4302543.6657085/1‑94 (MQ=60)
                                                        TCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGGTTCAATACCAAAAGACCGTAACGCCGCTTTACG                                      >  SRR4302543.7961338/1‑94 (MQ=60)
                                                        GCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACG                                      <  SRR4302543.715126/94‑1 (MQ=60)
                                                         CAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGGTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGC                                     >  SRR4302543.6404346/1‑94 (MQ=60)
                                                          AGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCG                                    >  SRR4302543.4070555/1‑94 (MQ=60)
                                                          AGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCG                                    >  SRR4302543.4518496/1‑94 (MQ=60)
                                                          AGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCG                                    >  SRR4302543.4070556/1‑94 (MQ=60)
                                                            ATGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCA                                  >  SRR4302543.674278/1‑94 (MQ=60)
                                                             TGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAG                                 >  SRR4302543.7297370/1‑94 (MQ=60)
                                                             TGGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAG                                 <  SRR4302543.7367458/94‑1 (MQ=60)
                                                             AGGTCGCCAAACCCTGTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAG                                 <  SRR4302543.2648120/94‑1 (MQ=60)
                                                              GGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGG                                <  SRR4302543.5443260/94‑1 (MQ=60)
                                                              GGTCGCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGG                                <  SRR4302543.1316650/94‑1 (MQ=60)
                                                                  GCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCA                            >  SRR4302543.7491427/1‑94 (MQ=60)
                                                                  GCCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCA                            <  SRR4302543.4314305/94‑1 (MQ=60)
                                                                   CCAAACCCTTTCACTTGCTTAATGNCGCGACGGGTAACATCTGCGGNTGTTTTAATACTAAAAGACCGTAnnnncgnntttngcncnngncnnn                           >  SRR4302543.6078037/1‑70 (MQ=60)
                                                                   CCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAA                           >  SRR4302543.1763622/1‑94 (MQ=60)
                                                                   CCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAA                           >  SRR4302543.1546853/1‑94 (MQ=60)
                                                                   CCAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAA                           >  SRR4302543.7162351/1‑94 (MQ=60)
                                                                    CAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAAC                          <  SRR4302543.4627426/94‑1 (MQ=60)
                                                                    CAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAAC                          >  SRR4302543.5902788/1‑94 (MQ=60)
                                                                    CAAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAAC                          >  SRR4302543.3169476/1‑94 (MQ=60)
                                                                    CAAACCCTTTCACTTGCTTAACGCCGCGACGGGGAACATCTGCGGCGGTTTCAATACCAAAAGACCGAGACGGAGCTTTACGCGCAGGCCCAAC                          >  SRR4302543.4559017/1‑94 (MQ=60)
                                                                     AAACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACC                         >  SRR4302543.901618/1‑94 (MQ=60)
                                                                      AACCCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGC                        >  SRR4302543.1331965/1‑94 (MQ=60)
                                                                       acacgttcacttgtcTAACGCCGCGACCGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCC                       <  SRR4302543.987528/79‑1 (MQ=60)
                                                                       ACCCTTTCACTTGTTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCC                       <  SRR4302543.987529/94‑1 (MQ=60)
                                                                         CCTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGG                     <  SRR4302543.2468131/94‑1 (MQ=60)
                                                                          CTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGG                    <  SRR4302543.5631780/94‑1 (MQ=60)
                                                                          CTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGG                    >  SRR4302543.2797668/1‑94 (MQ=60)
                                                                          CTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGG                    >  SRR4302543.4247943/1‑94 (MQ=60)
                                                                          CTTTCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGG                    >  SRR4302543.3777266/1‑94 (MQ=60)
                                                                             TCACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAAT                 <  SRR4302543.914382/94‑1 (MQ=60)
                                                                              CACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATA                >  SRR4302543.7629531/1‑94 (MQ=60)
                                                                               ACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAG               <  SRR4302543.7745496/94‑1 (MQ=60)
                                                                               ACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAG               <  SRR4302543.7745495/94‑1 (MQ=60)
                                                                               ACTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAG               >  SRR4302543.386141/1‑94 (MQ=60)
                                                                                CTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGTGCCAACGCCGGGAATAGA              >  SRR4302543.7331793/1‑94 (MQ=60)
                                                                                CTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGA              <  SRR4302543.1687093/94‑1 (MQ=60)
                                                                                CTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGA              <  SRR4302543.5277374/94‑1 (MQ=60)
                                                                                CTTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGA              <  SRR4302543.5277373/94‑1 (MQ=60)
                                                                                 TTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACTCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAG             <  SRR4302543.3821882/94‑1 (MQ=60)
                                                                                 TTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAG             <  SRR4302543.6044391/94‑1 (MQ=60)
                                                                                 TTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAG             <  SRR4302543.5592975/94‑1 (MQ=60)
                                                                                 TTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAG             <  SRR4302543.7117702/94‑1 (MQ=60)
                                                                                 TTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAG             <  SRR4302543.6044390/94‑1 (MQ=60)
                                                                                 TTGCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAG             >  SRR4302543.6807506/1‑94 (MQ=60)
                                                                                   GCTTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAGGC           >  SRR4302543.5008432/1‑94 (MQ=60)
                                                                                     TTAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAGGCAA         >  SRR4302543.29326/1‑94 (MQ=60)
                                                                                      TAACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAGGCAAC        <  SRR4302543.3369807/94‑1 (MQ=60)
                                                                                        ACGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAGGCAACAT      <  SRR4302543.1019983/94‑1 (MQ=60)
                                                                                         CGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAGGCAACATC     >  SRR4302543.3037343/1‑94 (MQ=60)
                                                                                         CGCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAGGCAACATA     >  SRR4302543.806675/1‑94 (MQ=60)
                                                                                          GCCGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAGGCAACATCA    >  SRR4302543.5040913/1‑94 (MQ=60)
                                                                                            CGCGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAGGCAACATCAAT  <  SRR4302543.3615900/94‑1 (MQ=60)
                                                                                             |                                                                                            
CGGCCTGAACACAAAACGGCGTTCACAGCTCGCTTTCCAGTCGATAACCGCCTGGGTCAGATGGTCGCCAAACCCTTTCACTTGCTTAACGCCACGACGGGTAACATCTGCGGCTGTTTCAATACCAAAAGACCGTAACGCCGCTTTACGCGCAGGGCCAACGCCGGGAATAGAGGCAACATCAAT  >  NC_000913/2147271‑2147456

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑